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Species:

Ananas comosus (TPB 2016)

EST ID:

c82285_g1_i5 (View in GBrowse)

Function:

Weakly similar to U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus GN=Snrnp27 PE=2 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

-

-

Frame:

Start:

End:

3

54

692

PEP:

>c82285_g1_i5 MADRRREKQKHRDRDRERERDRDRERERDRDRDRDRERNRDRDRDRERERDRKRSRSPSRSPSGSGSRSRSRSADRSSRRHGHNHHQHHHQNRRR SPSPESHRRKRRREGSNDLPPAASAELADGVPKNHKKQGGGSGGPADGEAAAVPTDANTEELEMMKQFGIPLGFDSTKGKPVPGADVSGVRVVTK RQPRQYMNRRGGFNRPLPPERNR

Sequence:

>c82285_g1_i5 gctcgcttcgtcttctctccgctgttttttgcgcgcaaggcgagagcggggctatggcggataggcggcgcgagaaacagaagcatcgtgaccga gatcgagagcgggagcgggaccgagatcgagagcgggagcgcgaccgagaccgagatcgagaccgggaacgcaacagggaccgcgaccgagatcg agagcgcgagagagaccggaagcggtcccgctccccgtcccgctccccctccggctcgggctcccgctcccgctcccgctccgccgaccgctcta gccgccgccacggtcataaccaccaccaacaccaccaccaaaatcgccggcgctccccctcccccgagtcccaccgccgcaagcgccgccgcgag ggcagcaatgacctcccccccgctgcctcggccgagcttgcagacggcgttcccaagaaccataagaagcaaggaggtggcagcggcggcccggc ggacggcgaggctgcagctgtcccaacggacgccaacacagaggaactggagatgatgaagcagtttgggattccgttagggttcgattccacca aggggaagcccgtgccaggggccgatgttagcggcgtgagggtggtgacaaagcggcagccgagacaatatatgaatcgcagaggaggctttaat cggccccttcctccggaacgcaaccgttagcaccctgtctcagttccaaagaatcatgggagcacgccaggaacgcagcataattcgatgcttat tatttggtactagatggggttccgatatcatctatttgtggaaagactttttgggtatttgtcctttgtttcatcattgttctgtcgacagtcct ggagaaacagaaattgctggcattgtattgagattatcggtagtcaagctgttcttcacataatttgtctgtatttttcaggtacctggctcatc aggtgagataaattctggattcccttttcagttcatccctttccatctttttctacctaactggtgcaaaagcactccaaaatctgaacctatat gatagtgctccacagattgtatgttgatcttagatagtcaaggagcccagaatttgtatgtttcaagttgctgtgatgggacctagagtcctcga acaatgagctatgaaaaccgaaacattttttttttctttttccctccataccggatctattctgatacatttctacgagatctgccgtacgctga attgtaaacatctaggatctgcagtccagcacatgtatcttttaagataattgtagaagttgcagtctactgagagatttataggcagatgtcct acaatcttttgtttggtataagctactcttgggcaccggctggaccctttaaaattatacagattcatgtataaagtgctgcgcaatacaattat gctatacgtccttaat

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c82285_g1_i5

c82285_g1_i4

3460842

3460914

+

1^2-,0

intron retention

LG20

c82285_g1_i5

c82285_g1_i1

3460842

3461106

+

1^2-3^4-,0

complex events

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco022270.1 (View in GBrowse)

0.0

99

40

695

1139

1794