Return Home

Species:

Ananas comosus (TPB 2016)

EST ID:

Ac4757 (View in GBrowse)

Function:

Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

3'-sequenced partial

No

antisense complete

Domain Search E-Value:

Domain / Pfam ID:

3e-43

pfam02854, MIF4G, MIF4G domain. MIF4G is named after Middle domain

Frame:

Start:

End:

-3

3

2210

PEP:

>Ac4757 GAGAGAGDLPFLRPHAAALKVGDSRFEARDCIRYTRDLLLQLRKVVHISEDILKIKQEIAEEFNVEDQTWGRTDSNSLNQSHTRYSEPDNRDWRG RSGQVSSYGEEKSWDTIRENKVSYGSNSTQQEQFNRHDQLNSQSSSRVQVSSNQGVGPTPALIKAEVPWSARRGNDSEKERVLKTVKGILNKLTP EKFDVLKGQLIDSGITTSDILKGVITLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPAEEAGRKEITFKRILLNNCQEAFEGAGNLRAEVRKLTG PDQEMERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDGKTCPAEENVEAICQFFNTIGKQLDESPKAWLVNDFYFNRLKELM TNPQLVPRLRFMVRDVLDLRANMWVPRREEVKAKTITEIHTEAEKNLGLRPGATANMRAARSASALGGPLSPTGPFPMNGPGTGGMMPGMPRTRR MPGMPGLDTDNWEVPRSKSMTKGNNASVFQNPSLNKLLPKGSGGSTSGKTSALLSGALNLPPQNTVPLKSLNTVSTVTPPSEKPLVAPKQDPDEL HKKTVALLEEYFHIRILEEALQCVEELNSPERHPEVVKEAINLALDKGSACIDPLVGLLQFLFAKNVLEPRDLGTGCLLYGSMLDDIGIDLPKAP VYFGEVMGKLILAGGLSFKVVEEILKKVEDERFREAIFDAVVKSIEANPSGLVIMSSQSTELEACKNLLAF

Sequence:

>Ac4757 catcgctaatttcacaaattatctaaaaataatccaatacaccaaacaatggctacaactccataaagaattaactaatgcaagtatcattgaag tattaatagtgaattaagaaaaacacattgcaaagaatactacactgcaccaacagcattcactttcgctacaccaaaagcacacaaaaaattaa gccacagctcaagagcaaaatccatggctctttttgcttcctacaccgtaaaacaacaatagactcgcgcaaataaaaagatgtacacctcgtaa cagtttcttgtcactcacaatttgcgggttgctcaccccacagagggcaaaagaggaaaaaaaacatcgaaaatttgagaagtgaaccatcctat cattttccggcttcagatatactctaaaagagtagcaagtagagataaaacctaaaacaacttactactcaaaaagcaagaaggttcttgcaagc ctcgagctcagtcgactgcgagctcattatgaccagacctgatgggtttgcttcgatacttttcacaacggcatcaaaaattgcttctctgaatc tttcatcctccactttcttcagaatctcttccactaccttgaagctcaagccacccgctagaatcaacttccccatgacctccccaaagtaaact ggtgctttcggcaagtcaataccgatatcatccagcatcgacccgtagagcaagcacccggtgcccaagtctctcggctcgagcacgtttttagc gaaaagaaactgcagaagcccgacgagaggatcgatgcaggccgagcccttgtcgagagcgagattgatagcttctttaactacctcagggtggc gttctgggctgttcagctcttccacgcattgcaacgcttcttcgagaattcgaatgtggaaatactcctcgagaagtgcaacggtcttcttgtgt agctcatcagggtcttgttttggagcaactagtggcttttcactgggcggggtcactgtagatactgtattaagagatttcaatggcacagtatt ttgcggtggcaagttgagagcgcctgaaagcaatgcgctggtcttgccacttgttgaacccccactgcctttgggaaggagcttatttaatgagg gattctggaaaactgatgcattatttccttttgtcattgacttggagcgcgggacttcccagttatcagtgtctaagcccggcattccgggcatc cttcttgtacggggcattccgggcatcatacctcccgttccaggtccgttcataggaaaaggccctgtgggagagagtggcccgcctaaagcact tgcactgcgagcagctctcatgttcgcagtcgcgccaggccgtaaccctaggtttttctccgcttcagtgtggatttcggtgatggtcttagcct tgacctcttcacgtcgagggacccacatgtttgcacgcagatcgaggacatcacgcaccatgaacctcagccgcggcactagctgggggtttgtc attagctccttcagccggttaaagtagaagtcattgaccaaccaagctttggggctttcatccaactgcttgccaatagtgttaaagaattgaca gattgcttcgacattttcctcagcagggcatgtcttgccatcaggtcctagtagttcctgaacgatgtgatgaactatcttctccggcaccattt tttgctttaggagctctccaataaggcggatgtttccgagggtacgcagcttcaccagtctttccttatccctccgttccatttcttgatccggg ccagtcaattttctaacctcggctctcagattaccagcgccttcaaatgcctcttgacaattatttaagagtatgcgtttgaatgttatctcttt cctgccagcctcttcagcagggaatgatgggagcttctcattgagatctgagcatagctgagcatacattggacaaaaggttggttcgaaaactg ctttctcaaatatgagagtgatgacccccttcagaatatcagatgttgtgattcctgaatcaataagttggccttttagaacatcaaatttctcc ggtgttaatttgtttagtatgcccttaactgttttcaacaccctctctttctcagagtcgttgcctcttcgtgcagaccatggaacttcagcctt tattaaagcaggagtaggtccaaccccttggttggaagaaacttgcactcttgaagaagactgggagttcaactgatcatgcctattaaattgtt cctgctgtgtagagttggatccataagatactttattttcacggattgtatcccaagatttttcttctccataagaagacacttgtcctgaccga ccacgccaatcacgattatctggctcggagtagcgagtgtgtgattgatttagagaatttgaatcagtacgaccccaagtttgatcttcaacatt aaattcttccgcaatttcctgcttgattttcaagatatcttcggatatatgaacaaccttgcgcaattgtaaaagtaagtcccttgtataacgaa tgcaatcacgagcctcaaaacgtgaatctccgaccttaagggcggcggcgtgggggcggaggaaggggaggtcgccggcgccggcgccggcaccg g

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

Ac4757

c86227_g7_i3

8278149

8278150

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco019695.1 (View in GBrowse)

0.0

100

449

2661

2331

119