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Species:

Ananas comosus (TPB 2016)

EST ID:

Ac3910 (View in GBrowse)

Function:

Protein transport protein SEC23 OS=Ustilago maydis (strain 521 FGSC 9021) GN=SEC23 PE=3 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

1e-65

pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain. COPII-coated

Frame:

Start:

End:

1

49

2382

PEP:

>Ac3910 MAADLSAAAADPDGPDAVRLTWRSWPRSKVEASKCVVPVAASISPLRTSPSLVVLPYAPLRCKPPCAAALNPYARVDFAAKIWICPLCFSRNHFP PHYAGISEANVPGELYPQCSTVEYAPPPLDASPPPPPVFLFVIDTCLIEEELGFVKSAMRRAIGLLPDHALVGLVTFGTQVHLHELGFADLSKIY VFRGTKEISKEQILDQLGLAAAGGRGAVAAGFPNPKGLPQANGRLHPPGSVNRFLLPASDCEYTLNSLLDELQTDQWPVEAGNRALRCTGVALSV AAGLLGACVPGTGARIIALVGGPCTEGPGMIVSKDLSEPVRSHKDLDKDAAPHFHKAVKVYDNLAKQLVNQGHVLDLFASALDQVGVAEMKVAVE RTGGLVVLSESFGHSVFKDSFKRIFEDGEQSLGLSFNGTLEINCSKDIKIQGVIGPCTSLEKKGALCSDSVVGQGNTTAWKMCGLDRTTSLTVFF DISPSDRSSQPGYPNPNLYIQFVTNYQHPDGQMRMRVTTITQKWVDSSAGTEELVEGFDQETAAVVLARYISLKMEMEEEFDATRWLDRSLIRLC SRFGDYRKDDPTSFTLHPNLSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRESITNSLAMIQPSLLSYSFNSPPAPALLDVASIAADRILL LDAYFSIVIFHGMTVAQWRNMGYQNQPEHQAFALLLQAPHDDAQLIIKDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNSAHEVAPGSDIIFTD DVSLQVFYEHLQRLAVQS

Sequence:

>Ac3910 tcctcctcctcctcctccacctctaccggagctccaccgccaccaacaatggcggcggacctctctgcggcggcggcggaccccgatgggccgga cgcagtgcggctcacatggcggtcgtggccgcgatcgaaggtggaggcgagcaagtgcgtggtgcccgtggccgcctccatctccccgctccgca cctcgccgtcgctcgtcgtcctcccctacgcgcccctccggtgcaagcccccctgcgccgccgcgctcaacccctacgcacgcgtcgacttcgcg gcgaagatctggatctgccccctctgcttctcccgcaaccacttcccgcctcactacgccgggatcagcgaggccaacgtccccggcgagctcta cccccagtgctccaccgtcgagtacgcgcccccgccgctcgacgcctccccgcccccgccccccgtgttcctcttcgtcatcgacacctgcctca tcgaggaggagctagggttcgtcaaatccgccatgcgccgcgccatcggcctcctccccgaccacgccctcgtcggcctcgtcacgttcgggacg caggtgcacctgcacgagctgggcttcgcggatctgtccaagatctacgtgttccgggggacgaaggagatctccaaggagcagatcttggatca gctcgggttggcggccgccggagggcgaggagcggtcgcggcggggtttccgaaccctaaggggttgccgcaggccaacggtcggctccatccac cgggctcggtcaataggttcctcctccctgcgtcggactgcgagtacaccctcaattcgttgttggatgaattgcagactgatcagtggccggtg gaggcaggaaaccgagcgttgcgatgcacgggtgttgctctcagtgttgcggccggcttgttgggagcgtgcgtgcctggtactggggctcggat catagctttggttggtgggccatgtactgaagggccgggaatgattgtatcaaaagatttgtcggagccagtgcgatcacataaagatcttgaca aagacgcagctccacatttccacaaggcagtaaaagtttatgacaatctggcgaaacagttggttaatcagggccatgtgttggacctttttgca tctgcacttgaccaggttggggttgcggagatgaaagttgccgttgaaagaacaggcggtcttgtcgttctgtctgaaagttttggccactctgt tttcaaagattcgttcaaacgaatctttgaggatggcgagcagtctttaggcctttcttttaatggtacacttgaaatcaactgctcaaaggaca taaagattcagggagttattgggccatgcacatctttggagaagaaaggagctctgtgttctgattccgttgttggtcaaggcaacacaactgcg tggaaaatgtgtggtcttgataggactacttctctgactgtcttttttgatatatcaccaagtgatcgctcaagccaaccaggatatccaaatcc caatttgtacattcagtttgtgacaaactatcagcatccagatggtcaaatgaggatgagggttacaaccattacccagaaatgggtggatagtt ctgccggaacagaggaattggttgaaggttttgaccaagaaactgctgctgtcgttttggcaagatatatctccttgaaaatggagatggaggaa gaatttgatgcgacacgatggctggacagatcgctcatacgactttgttcacgattcggtgattatcgtaaagacgatcctacttcatttacctt acatcctaatttatcgctatttcctcaattcatgtttaatctgcggcgttcacaattcgtacaggtgttcaataatagtccggatgaaacagcat atttccgaatgttgttgaaccgtgagagtatcaccaactctcttgcgatgatccaaccttccttactctcatactcatttaattcacctccagct cctgcactactcgacgtagcatccattgcagcagatcgcatactgttgctcgatgcctattttagcattgttatcttccatggtatgacggttgc tcagtggcgcaacatgggttaccagaatcagccagagcatcaggcttttgctctactgttgcaagctcctcacgacgatgcccagcttattataa aagatcgattccccgtaccaagattagttgtttgtgatcaacatggctcacaggcgagatttttgctggcgaaactgaacccatcggccacatac aactcggctcacgaggttgctccgggctccgacatcatcttcacggacgacgtcagcctccaagtattctacgagcatctccaacggttggccgt tcagtcgtaagaccatacacatcatgcaaaccccttctttttttaggtaaaattaacttatcattgtcagaggtcgttggtcctttcgatgtgtc ggttatatttcctcatttttttcttcccctgttatttcacaccgattttcgtatgttcttcataaataaatgcatctattctctatattttgtta cttaaattaaggagatgattaagtttgtcgttgtatcagggatcgatcaaaagttcgatagtagtacattcatttcttttttatttagaacttca gatttgaaaaaccttgctagggtttgcagtttaagggcataactcaagaaattttttttggtgatatcatgttgtctatcttgctgcacattgtg tgaaaatggtttttcttaat

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

Ac3910

c84483_g1_i3

757858

758389

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco013497.1 (View in GBrowse)

0.0

99

49

1547

1

1502