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Species:

Ananas comosus (TPB 2016)

EST ID:

c89445_g1_i7 (View in GBrowse)

Function:

Homologous to Riboflavin biosynthesis protein PYRR, chloroplastic OS=Zea mays GN=PYRR PE=1 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

3e-56

pfam08719, DUF1768, Domain of unknown function (DUF1768). This is

Frame:

Start:

End:

2

1865

2479

PEP:

>c89445_g1_i7 MLISGYLQPIPDLSPVIPSADETSSVDPTVSPYDTNIISFYKTWDPYGAFSNFSPHPIEMPDENGDYVTWRSVEHYYQAHKFMGVDSPVAAEFVE QIQLAKSPEEAARTGRKLQREHPELVRPDWESTKIDVMYRALKCKFATYPHLQTMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMQLRS EILEEASKVSVAESA

Sequence:

>c89445_g1_i7 gtttttgtacgcgcaggggacgaagtgcgcggagctccaagcggcggaggcggcgggagagctcgcgcgcggcggcgtcgcctacctcaacctgg agcccggggactgctacggggatcacaccgctgtatcctccctcgtccaggcaggaatttcaagagttgtcgtgggtctcagacagccgctgccg cacttgcgagggaaggcaatacaagccctaagaagtgaaggcattcaagttgatgtcgttggagaggagttgcagagtaaaatattcgaggaagc tttaaagtcctgcctgtcagtaaatgctccattactctatagagctgcctttcgtgttccattctctgttctcaagtatgctatgaccttagatg gaaaaattgcagctagtagtggccatgcttcttgggtaagcagcaaactatccagaagtcgagtatttgagttgcgtggcagaagtgacgccatt gttgtaggtggaaataccgtacggcgtgatggtacaccacttttagaagaatatagattttcaattaaatgttagctcttttttttgcatatttt tcttgagttctacttagttaaaagccccgactgatgattttcttcaattttactattgactgaaaaaaaaaactctagaagttcctttttttccc ccccttttagcaacaatcagaaaatgaatagtttcattgaacgtacaaactcaaattctatgtggagtgcagttggttacacttccaaattcaaa ttctatgtgatggagtttgccgagaggtgaaacatctcttttttatcattcgtaagctttcgatctcatcttcttcagaacaggaaatatttgag aaattattattactgaattgttgttttttgctggtaaacgaacttcatgaatgtgcagatttcaaataacgcatcactcactggcccactgcatc ccacagaatttggtcttaaaagacatgaaacaaaggggagtgtaaccaattgaggcttgaataagttcattctagttgcccagatcatatataac ttgagtaaaggaaagataaaataagggggaaaaaaagaatggcctagtgttaatgccttatttcaattaagatgcttttagtgtaataccagatc ctcggctaactgcaagacatggagggcaccacgttcctgcgcgtattgtgatgtcgcaaactcttgaccttcccgaggaagcgaatctctggaac gtcttcgaagcatacactatagtcgccacacaaaggggtgctaggaaagacatgcagaagaagcttgcggctaaaggcgtcgaggtggtggagtt tgacatactaaatcctagggatgtgatgtcgtattgctatgatcgtggctacctttctatactgtgggagtgtggtgggtcccttgctgcgccgg ccatctcttctggtgtaattcacaaggtttttgcatttgttgctccaaagatcattggaggagtaaatgctccgtcgccagttggtgaattaggg atggttcaaatgtcacaagcgcttgatctaattgacgtttcatatgaacaggcgactcttaatgctcattcccgtttaattcttttcaccaaatg tgctatccgagtaacactagtttggatcatgatacaaattgttacatgtttgcacttaatttgaactttgtttacagtgggcaatttaacctgtc tacttattttgtcgcttcatccaatcatagagttttattgctattaattgtgataagtattgcatttgccgcttatataacttcaatatgcttct agaaattaagatctaatagaatataatgtgattcatgtgcattacagattggaccagacatgctgatcagtggatatcttcagcctattccggat ttatcacctgtgattccatcagctgatgagacttcgtctgtcgatccgacagtttctccgtacgatacaaatatcatatcgttctataagacatg ggatccatatggagccttctcaaacttctctcctcatcctattgaaatgcccgatgaaaatggagattatgttacttggcgaagcgtcgagcact attatcaggcgcacaaatttatgggagtcgatagtcccgtggccgcagagtttgttgaacaaatacagttagcaaaaagccccgaggaagcggca cgaacgggacggaaattgcaaagagagcaccctgaactggttcgacccgactgggaatcaacgaagatcgatgtcatgtacagagctctcaaatg caagttcgcgacgtacccgcatttacaaaccatgcttctttctacagcaggctccgttcttgtcgaggcgtcgccccacgacctcttctggggtg gaggccgggacggcgaaggactcaattatctgggccggcttctgatgcagttaaggtctgagattttggaagaggcctcgaaagtgagcgtagcc gagtcggcgtagttcacaaaataccgaaaa

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c89445_g1_i7

c89445_g1_i2

803459

803600

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco013504.1 (View in GBrowse)

0.0

99

1853

2482

1312

1941