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Species:

Ananas comosus (TPB 2016)

EST ID:

c89296_g1_i2 (View in GBrowse)

Function:

Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

2e-14

pfam13041, PPR_2, PPR repeat family. This repeat has no known

Frame:

Start:

End:

1

34

1635

PEP:

>c89296_g1_i2 MYRCYRALVTRERTLATRRFLSDSLELGLGFPKPSLPGIEPSPGADTLAALLLRHHNPFHPLESPLELVALGGGAALSPALVVQTLLRLRHASKV ALAFFVSVRDHVHHHRCNGGAQPLLGPAAYDAMVDILGRVRQFDVAWQLIVEMGCGGGGDVGPTPRTFAVLVRRYVAAGMTRQAIRSFDDMEAFV GREPSSAEFQMLLDTLCKYGHAKVATEIFNKRKSKYEPDEKTYSILIYGWCKVNQLEMAQKFLKEMTDRGVEPNIVTYNILLNGICRHASLHPEN RFDRTIRAAEDLLKEMGSRGIEPDVTSYSIILHVYSRAHKPELCLHMFRSMREKGICPTVATYTSVVKCLASCGRLEAAEKLLDEMSSNGVCPSP ATYNCFFKEYRGRNDAEGAMNLYKKMKESGLLSKPDIHTYNILLGMFSKLDRLGTVRELWSDMSESGVGPDLDSYTLLIHGLCEKNKWREACQFF MEMIEKGFLPQKVTFETLYRGLIQADMLRTWRRLKKKVDEESLKFGAEFEHYHFKPYKR

Sequence:

>c89296_g1_i2 agagagagagagagagagctgtgttgctctcccatgtatcgttgctatcgtgcgcttgtgaccagggagcgcacgttagcgacccgacgcttcct ctccgactcactggaattagggttagggtttccgaagccgagcctccccgggatcgagccctcccccggcgccgacacgctcgcggcgctcctcc tccggcaccacaaccccttccacccgctcgagtccccgctcgagctcgtcgccctcggcggcggcgccgccctctcccccgccctcgtcgtccag accctcctccgcctccgccacgcctccaaggtcgccctcgccttcttcgtctccgtccgcgaccacgtccaccaccaccgttgcaatggcggcgc ccaacccctcctcggccccgccgcgtacgacgccatggtcgacatcctcggccgcgtgcgccagttcgacgtcgcgtggcagctcatcgtcgaga tgggctgcggcggcggcggcgatgtggggcccacgccgaggacgttcgcggtgctggtgaggaggtacgtggcggcggggatgacgcggcaggcg atccggtccttcgacgacatggaggcgttcgtcgggagggagccgagctcggcggagttccagatgcttctggacaccctctgcaagtatgggca cgcaaaggttgcaacagagatattcaacaagagaaaatccaagtacgaacccgacgagaagacgtactcgatcttgatttatggatggtgcaagg taaaccagctcgaaatggcccaaaagttcctaaaagaaatgaccgatcgtggggtagaaccgaatatagttacatataacatcctgctgaatggg atttgcaggcacgcgagcttgcacccggaaaatcgcttcgacagaacaatccgtgctgctgaggaccttttgaaggaaatggggtctagggggat tgaacccgatgtgacgagctactctatcattctacatgtttatagccgggcccacaaacccgagctctgtcttcatatgttccggtcaatgagag agaaaggcatttgccccactgtggcgacatacacctcggtagttaaatgtctggcttcttgtgggagattagaagctgcggaaaaattactcgac gaaatgtctagcaatggagtgtgcccatcccccgccacttataattgcttctttaaggagtatagagggagaaatgatgcggaaggcgcaatgaa tttgtacaagaaaatgaaggaatcgggcttgctaagcaagcccgatattcacacgtacaatatattacttggaatgttctcgaagttggatcgat taggaactgttcgggaattgtggagtgatatgagtgagagtggtgttgggccagatttggattcgtacactttgctcatccatgggctttgcgag aagaataagtggagagaagcgtgccagttctttatggagatgatagagaaagggtttctcccgcagaaggttacattcgagactctttatcgagg attgattcaagctgatatgttgaggacttggaggagattgaagaagaaggttgatgaagaatcattgaaatttggtgctgagttcgagcattatc attttaaaccgtataagagatgattttagttgtgggcttgaattttgtaaatacgtgattgggaagatgaggcttttttcttaggctgattttac acggcaaaatgcaaaaagattgaaagcagtttggaagtggtatcataattataggtgctgtaagccatcatgcttaaagatgattcttttgatac aatccaccaactctgcagcttgttatctctatgcgtaggtgctctgggacaggtcagtttgaagaagccctaatagcttttctgttaaaatcatt aaggcatctctcgactgtagctagaagcagaaattccgaagcggctcctgattttgtggctcaaaagctcatgttgcacattcctctccaaccaa aagctctacaccatttgtttggcaaacattcatcttctacttctatagttaagaagctcttctcgaaggcgtgaaaaaagaaggtttgtcaatgc tgtcgttagcaatgtacgtatgttctcttaccaagtgcttgagaaatctttctttaaagtttttcttagtcttactatttatgattgtttcaacc atatatttctatgttttctacgttggttaacaagttaaggtcttttattcgtagttcggtggatatatttttataaatggtttggtgagtgtgag atgctaccaaagaataatatattgtgttgtatctttggactagctcgcttagcttaagcgagcttactaaacaagtaaaatatttgaatcgagc

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c89296_g1_i2

c89296_g1_i1

323263

323368

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco019047.1 (View in GBrowse)

0.0

98

34

1638

1

1617