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Species:

Ananas comosus (TPB 2016)

EST ID:

c89275_g2_i2 (View in GBrowse)

Function:

Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Short (95) full-leng

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

5e-14

pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, RBD, or RNP

Frame:

Start:

End:

3

78

1013

PEP:

>c89275_g2_i2 MDENYLHSCFGHTGEVLSIKVIRSKQTGQSEGYGFVEFFTRAAAEKVLQSFSGHIMPNTDQPFRLNWASFSMGDRRAEVASDHSIFVGDLASDVT DAVLQEIFATKYPSVKGAKVVIDANTGRSKGYGFVRFGDDNEKRLAMTEMNGVYCSSRPMRIGPATPRKSSGGSGSNGSGQSDGDPMNTTVFVGG LDPNVSEDDLRKTFSQYGDIASVKIPPGKQCGFVQFVQRNNAEEAMQGLNGTMIGKQTVRLSWGRNPASKQLRADFGNQWNGMYYGAQLYNGYGY AAQFPDPTVYAAPYGAYSYDGNQQQVS

Sequence:

>c89275_g2_i2 cggcggcggcggcggggggaggcggcggagggggtgaggagaacaagtcgatctgggtgggggacctccacttctggatggacgagaactacctc catagctgcttcggccacaccggcgaggttctatcgattaaagttattcgcagtaagcaaacaggacagtccgaaggatacggttttgtggagtt cttcacacgagcagcagctgaaaaagtacttcaaagcttctctgggcacataatgcctaacaccgatcagccttttaggttaaattgggcatcgt ttagtatgggggatagacgtgcagaagttgcttctgatcattccatatttgtcggcgatctagcatctgatgtcacagatgcagtattgcaagaa atatttgctactaaatacccatccgtaaaaggtgcaaaagttgtcatagatgctaatactggtcgttcaaaaggttacggatttgtaagatttgg agatgataatgagaagaggctcgccatgacagaaatgaatggcgtatattgctctagcaggcccatgcgtatcggcccggcaacccccagaaaat cttcaggtggttctggatctaatgggtcaggacaatcagatggtgatccaatgaacacgacagtatttgttggagggcttgaccctaatgtcagt gaagatgatctgaggaaaaccttttctcagtatggagacattgcttctgtaaagattcctcctgggaaacaatgtgggttcgtgcaatttgttca gcgaaacaatgctgaagaagcaatgcagggcttgaatggaacaatgatcggtaagcagacggtgcgtctttcatggggtcgcaatccagcaagca aacagttgagggctgattttggaaatcaatggaatggtatgtactacggagcacagctctataacggatatggttatgctgcgcaatttccagat ccgactgtgtatgctgcaccttatggggcttattcctatgatggaaatcaacaacaagtgagctgaagagacataataaaaaccggcctagtagc gtcttatgaaaaacttgatggtcttcggtgagtcaaatgtagtaaactaattagggtaaaatgtatgaatggtcttgctatcatgatatggctac gtggtcctgcacttctcacttaaaacactttaatccatgaactttcacatatgttgctctttagttcatgaccgctgaaaaaaaaaaaaaactgt tatttgttgtaaaataaccttgttatcctcatttgggtttaatctaaaataagcaaatcattttacaaaagagctaaaatggtcatccaataagg gaaggtaattaaatttttctttatggtcaagggctaaattataacatatgtgaaagttcggaaactaaaatatttatgtggaaagtatgaggatc aagtcg

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c89275_g2_i2

c89275_g2_i4

9376737

9376811

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco014751.1 (View in GBrowse)

0.0

99

1

634

209

842