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Species:

Ananas comosus (TPB 2016)

EST ID:

c88907_g1_i1 (View in GBrowse)

Function:

Highly similar to Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

7e-19

pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain. Escherichia coli

Frame:

Start:

End:

2

839

1846

PEP:

>c88907_g1_i1 MPKFETHEIEPSKKRKWLTKKRLKLKRKREKSKRKDANKKDPRRIRPKGLKKKQKFPTAEARIKYKIEKAKLKEAMLVEKLKKYEVPEVHGPMVK PEELTGEERFYVKKMAQKKSNYVPIGRRGIFGGVILNMHLHWKKHETVKVICKPCKPGQVHEYARELERLSGGVAIQVIGNDTIVFYRGKNYVQP EVMSPIDTLSKKKALEKSKYEQSLETVRRFIAISEKELELYYRHVALYGDPQTRNADLVYGDDQKTPFSMGTEELIFSKEERVCSSDHCDVSEDF SGMEVDSDYEFDSNEREFTEDETDSDVEEESNCQVDLEDGEEEFEVPKYPA

Sequence:

>c88907_g1_i1 aaaaaaaaaaaaaaaaagaaaaagttctccgcaggaaaaagcgcggttatatgcaatatcaataatgaagaaaaggaaagattagtttcacttcc acttcgtctcccgcatctctaatggcggagctcatgagctcccccctccgatcgccgctcccggaggaagagctccccctccccgcgcttcctcc gccgccgacgccgacgccgacgaggaaaaatggtgaacaactgaactagctgttgattgactccacctcctcatgcatttagtaataagcaatgg cacgctgtttcctctttcttcgaaggctgcaaaggccgccttctttatctcttcataatttgtttttttctagagcatttgctgcccctctccct ccatcgttatggtcatcactttttctttttgattctcgtaacttccctaatttgttcggtggaggttgtcctcaatcttttctcctagtttcgat tagattcctttaccaaattatacagaactaactatgtaatcgtcatatacctaccatgtaactttttgatttgtgtggatacttcgatcctattt aacccataaatttaatggaaatgttatgattgtaaacattagacattttcttgtgacaatgaaaaggttggggaccaaactgaaaccttctaaag agtttggggaactctaatgcaattcaccctcagttcgttcctcatcatctctcgtcgcgttttgaagcaggtattctcttaacaaaagttcacac tcatttcacccatctggaaatttgtggaatataaggaatgttagctatggatccgtgaatctcgtccttaatgacgggatgccaaaattcgagac ccatgagatagagccttcgaaaaagaggaaatggctcacgaagaagcgacttaagctcaaaaggaaacgggagaagagtaaaaggaaggacgcaa acaaaaaggatccacgacgaatacggccgaaagggttgaagaaaaagcaaaaatttcccactgccgaggctcggatcaagtataagattgagaag gccaaactaaaggaagctatgcttgtcgaaaagctaaagaaatatgaagtcccggaagttcatggcccgatggttaaacctgaagaactgacggg tgaggaacgattttacgtaaagaagatggctcagaaaaaatctaactatgttcccattggacggcgaggcatatttggaggagtaatactcaaca tgcacttgcattggaaaaagcatgaaactgttaaggttatctgcaagccttgtaaaccaggccaagttcatgaatatgctagagaattagaaagg cttagtggtggggtagctattcaggttattgggaatgacacgattgttttctatcgtggaaagaactatgttcagcctgaggttatgtcaccgat tgatacactatcgaagaaaaaggcacttgagaaatcaaaatatgagcagtcgcttgagacagttaggcggttcatcgcgatatctgagaaggaac tcgagctttactaccgacatgtggcactttacggcgacccacagacaaggaacgctgatttagtttatggtgatgatcagaaaaccccttttagc atgggaacagaggaattgattttttccaaggaagaaagagtttgttcttctgatcattgtgatgtatcagaagatttttctggcatggaagttga ctcagattatgaatttgattccaacgaaagggagttcactgaagatgaaactgattctgatgtggaagaagaatctaattgtcaggtggatttag aggatggagaagaggaatttgaagtgccaaaatatccagcctgatgatattctgattcatcaagtcaaaagagtggacttccaagctatattttc ttcatgcaaagaacctcccagtggggccctgagagaagtcaatcccataagggtagtaattggactttgcaagtgaactgaggtagttgttgttc ccatcatcgacgagcgagtctccgaagacgaacattgctgggacctgaggtgccccatgcaccccagctgagaagaagcagaagcaagaagacac gaaaatcgctccagcaaggagcccttcggaagctgtttttgagctgaactttctcatttttgttcaaacaaagttgatgggagtgaaagcaaatt gcaattagaagctgtggagatggctgtatatatactcggatgtgataaatgtgtacactagggttcctgcaaggatattttggtccaaatgtgcg aatatcgg

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c88907_g1_i1

c88907_g1_i4

1470303

1470648

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco013607.1 (View in GBrowse)

0.0

98

745

1849

129

1233