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Species:

Ananas comosus (TPB 2016)

EST ID:

c88530_g2_i2 (View in GBrowse)

Function:

Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

antisense complete

Domain Search E-Value:

Domain / Pfam ID:

4e-72

pfam00501, AMP-binding, AMP-binding enzyme.

Frame:

Start:

End:

-3

57

1568

PEP:

>c88530_g2_i2 MREIEVNSEGKSFEKLHLGDYEWLSYGEAFNVVCHFASGLVQIGHGKDERVAIFAETRAEWQIALQGCFRRSITVVTVYASLGEGALCQSLNETE VTTVICGPKELKKLIAISGQLDTVKSVIYMNEEGVSSDVSSAEKNTNWKIIQFEEVVELGKENPADADLPASADIAVIMYTSGSTGVPKGVMMTH HNVLATISAVMTIVPDIGNNDVYMAYLPLAHILELAAEAVMAAIGGAIGYGSPLTLTDTSNKIKKGTKGDASVLRPTLMTAVPAILDRVRDGVRK KVDEKGGIAKKLFDIAYSRRLAAINGSWFGACGPEKLLWDVLVFKKVRAILGGRIRFVLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGGT FSEFDDTSVGRVGAPLPCSYIKLIDWPEGGYLITDSPMPRGEIVIGGPNVTVGYFKREAKTKESYKVDERGMRWFYTGDIGRFHPDGCLEIIDRK KDIVKLQHGEYVSLGKVCILIASFQKFYK

Sequence:

>c88530_g2_i2 cccaattaaaaccgcctccacctgcgattacgattttaatttgcaaaacaaattataaaagaagcacactcgtaagcacaagatatttgaattcc ttccatcatgaaatggatgattcgccaacttatgataagggcttatacatgaaatggaacatttatttgtaaaatttttgaaatgatgcaattaa aatacacacctttccgagagagacgtattcaccgtgttggagttttacaatatcctttttacgatcaatgatctcgaggcaaccgtccgggtgaa aacgcccaatatcgccggtgtaaaaccaccgcatacctctttcatcgaccttgtaggattctttagtttttgcctcccttttgaagtagcccaca gtaacattcggtcccccgatgactatttctccgcgaggcatcggcgaatcggttattaaatatccaccctctggccaatcaattaacttgatgta tgaacaaggaagtggagcgccaacacggccaactgatgtgtcgtcgaattccgaaaatgtccctccagcgcaagtttccgttagaccatatcctt gccctattggagccccaaggcatatgttgatgaatctttgtgtatctccagagagaggagctcctccagagagtacaaaacgaatgcgacctccc aatattgcacgaacctttttgaagacaagaacatcccacaatagcttctctggcccgcatgcaccaaaccagcttccattaatagccgctaaacg acgactataagcgatatcgaatagtttctttgcaatgccacccttttcatctacctttttccgcacaccgtcacgaacacggtcgagtatggcag gcacagcagtcataagggtgggtctcaacactgaggcatcgccttttgttcccttttttatcttatttgatgtatcagtaagagtcagaggtgaa ccataccctatagcgcctccgattgcagccattacagcctcggctgctagctcgagtatatgagctaatggcaggtatgccatgtatacatcatt atttccgatgtcggggacgatggtcataacagctgaaattgtagctagcacattgtgatgtgtcatcattactcccttcggcacgccagtgctgc cactagtgtacatgatcacagcaatgtcagctgaggcaggcaaatcagcatcagcaggattttcctttcctaattccacaacttcctcaaattgt atgattttccagttagtgttcttctcggccgaggagacgtcagacgagactccctcctcgttcatgtatattacactttttaccgtgtcgagttg tccacttatagcaatcagcttcttcaattctttaggtccacaaattacagtagtaacctcagtctcgtttaatgactggcaaagagctccctccc ccagagaagcatatacagtgacaaccgtgatacttcgcctaaaacaaccctgtaaagcaatctgccactcagctcgagtttcggcaaaaatagcg acgcgttcatcctttccgtgcccaatttgcaccaacccagacgcaaaatgacacactacattaaatgcctcgccgtaacttaaccactcataatc acccagatggagcttctcaaatgatttcccttccgaattcacttcaatctccctcataatcacccagatggagcttctcaaatgatttcccttcc gaattcacttcaatctcc

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c88530_g2_i2

c88530_g2_i1

2039670

2039856

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco014553.1 (View in GBrowse)

0.0

97

240

1670

1703

252