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Species:

Ananas comosus (TPB 2016)

EST ID:

c86374_g2_i2 (View in GBrowse)

Function:

Similar to Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

-

-

Frame:

Start:

End:

2

140

1042

PEP:

>c86374_g2_i2 MHCGREVMKLLLLRKEVRSLLKRKNGDAGDGGTFFEDLQATIFSELRSSEGARRMQQRLCGPTVALSFNFLVSVGIIMLNKLVLGKVGFNYPIFL TFLHYLLSWVLMAILNAVFLLPAAPPAKSTLFSSLLALGVVMSLSSGLANVSLKYNSVGFYQMAKIAVTPTIVLSEFMFLKKTVSFQKALALSIV SIGVAVATVTDLEFQFFGACIALAWIVPSAINKILWSNLQQQDNWTALAYVSPHTLESKLLASWFFNWTASVTYLLIIYLFEQFNVEDNADHTLL FGPSDALARSTRHSIF

Sequence:

>c86374_g2_i2 ggcggtgtggtcactccccaataaggcaataacttttgtctgcacgattggtagtgaatgggtaccgaacatctcttgtttcccactcttccctt ctatactgcactctcttcgctcttggaattggttgagggggagaatgcactgcggtagggaggtgatgaagttgctgctgttgaggaaggaggtg cggagccttctcaagcgcaagaacggcgacgctggcgacggaggtacatttttcgaggacctacaggccaccattttcagcgagctacgctcgtc ggaaggcgcgaggcgcatgcagcaacgcctctgtggcccgaccgttgctttgtccttcaatttcttggtctcggttggtatcatcatgctgaaca aattggtactagggaaagttgggttcaattatcccatctttcttacctttctccattacttgttgagctgggtattgatggccatcttgaatgca gtcttcctacttcctgcggcacctccggccaagtcaaccctcttttcttctctattagctcttggtgttgtgatgtctctttctagtggcctagc aaatgtcagcctcaaatataacagtgtgggtttctatcagatggctaagattgctgtaacgccaacaattgttctctccgagtttatgtttttga aaaagactgtttctttccaaaaggcactagcattgtctattgtctcaattggtgttgctgtcgcaactgttacagacctcgagttccagttcttt ggagcgtgtatagcattagcatggatagtacccagcgcgattaataagattttatggtccaacttacaacagcaggataactggacagctttagc gtatgtttctcctcacaccctagagtcgaaacttttggcatcttggttctttaattggacagcatctgtcacttatctcctgattatatatttat tcgaacagtttaatgtggaagacaacgccgatcacactcttctttttggtccctctgatgccttggctagatccacccggcattctatcttttag ttggaatttctataattcgtcagctatttttttgtcagctttcctcggttttctgcttcaactatctggcgctctggcccttggggcgacttctg cgacttctcatgtcgttctagggcagttcaaaacatgtgttatccttcttggagggttccttctcttccgttcaaatcctgggacgttaagcata tgtggggctatcacagctcttgcagggatgtccttgtacacatacctcagcatgctcgtctccgaacagaaaacaactaatgcagctcttcggca gtctttgtcgttctcgttatcaagatccaagctctgtaaagatgctagtgatctccagaatggaggtgctaccggtgaatcagtttgaaggcatt caaatatatgctatgtatcacggacgtgactgcaaggctcgcgtgtccgtgctagatacatgtgtgtctgtattatatttgtgtc

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c86374_g2_i2

c86374_g2_i4

5532915

5533019

+

1^2-,0

intron retention

LG20

c86374_g2_i1

c86374_g2_i2

5532915

5533189

+

1^,2^

alternative donor site

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco028875.1 (View in GBrowse)

0.0

100

140

856

1

717