Plant Alternative Splicing Database - EST Display

Return Home

Species:

Ananas comosus (TPB 2016)

EST ID:

c83788_g2_i4 (View in GBrowse)

Function:

Homologous to PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica GN=Os11g0244800 PE=2 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

antisense complete

Domain Search E-Value:

Domain / Pfam ID:

6e-78

pfam12165, DUF3594, Domain of unknown function (DUF3594). This

Frame:

Start:

End:

-3

542

PEP:

        
          >c83788_g2_i4

          MDDGGGGGYNPRTPEEVFRDFRARRAGIIKALTTDVEKFYQQCDPEKENLCLYGHPDETWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSL
VAVHSDSWLLSVAFYFGARFGFDKESRRRLFTMINGLPTIYEVVTGTSKKQSKEK

Sequence:

        
          >c83788_g2_i4

          ttttttcttttgattgcttcttcgaagtcccggtcacaacttcatatatagtgggaaggccattaatcatggtgaaaagccgcctccttgattcc
ttgtcgaacccaaaacgtgctccaaagtagaaggcaacagacagtagccatgaatcactgtgaaccgcgaccagagacaaccaatccttttcttc
catcccatcacgagcaaaatttatccctaatgctggttctggaagttcaggagggacttcctcagcaggcaagttcacttcccaagtctcatcag
gatggccatacagacataagttctccttctcaggatcgcactgttggtagaacttctccacatcagtggttagggctttgataatcccggccctt
ctcgctctaaaatccctaaacacctcctccggcgtccgcggattgtagccgccgccgccgccgtcgtccatatcgccaccgcgagaggagatcga
gctcgccgatttcgtgcgcgaatccgtcgaacaccgcggcgtcgcaggaggaatcgaagcacgagaac
        
      

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c83788_g2_i4

c83788_g2_i3

1399965

1401056

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco013565.1
(View in GBrowse)

e-106

100

193