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Species:

Ananas comosus (TPB 2016)

EST ID:

c83619_g1_i2 (View in GBrowse)

Function:

Isocitrate dehydrogenase

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

e-100

pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase.

Frame:

Start:

End:

1

115

1215

PEP:

>c83619_g1_i2 MALRRLLGRSSRIPIVSRVFASSAAPFSAAASPSDTIRATLFPGDGIGPEIAESVKQVFGAAQVPIEWEEHYVSDKVDPRTESFLTWESLESVRR NGVGLKGPMATPIGKGHRSLNLTLRKELGLYANVRPCSSLPGYRTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFH YAKTNGRERVSAIHKANIMKKTDGLFLKCCREVAEKYPEITYEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLSAGLIGGLGLTPSCNIGE GGIALAEAVHGSAPDIAGKNLANPTALLLSSVMMLRHLKLNDKADQIHNAILDTIAEGKHLTVDLGGRSSTTEFTEAVCDHL

Sequence:

>c83619_g1_i2 tctctctctctaaactctctctctctgaatcgatcaatcggaactaactaaaaccctcgtcgttgatctcttcttcgacgcttcttagccctagg gagaggtgaggtgtgcgccatggcgcttcggcggctccttgggaggagctcgaggatcccaatcgtatctagggttttcgcatcgtccgcggcgc ctttctccgcggcggcgtcgccgagcgacacgatccgagccaccctcttccccggcgatggaattgggccggagatcgccgaatcggtgaagcag gtttttggtgcagcacaagtgccaatagaatgggaagaacattatgtgagcgacaaagttgaccccagaacggagagctttttaacatgggaaag tcttgaatcggtgaggagaaatggcgtgggcctgaagggccccatggctacacctatcggaaaagggcacaggtccttgaatctcacattaagga aagagctcggcctttatgccaatgttagaccttgctctagccttcctggttatcgaactcggtatgatgatgtgaatctcatcacaatccgtgag aataccgaaggagagtatagcggtctcgaacaccaagtagtgagaggtgttgtagaaagtctaaaaattattacccgtcaggcgagtctgcgagt tgctgaatatgcttttcactatgccaagactaacggccgcgaaagagtgtcagctattcacaaagccaacatcatgaagaaaaccgatggccttt tcctcaagtgctgccgtgaagttgctgagaagtatcctgaaataacttatgaggaagtgatcattgacaattgttgtatgatgcttgttaaaaat cctgccctcttcgacgtgttagtgatgccgaatctctacggtgacatcattagtgacctcagtgctggtcttattgggggtttgggattaacccc aagctgcaacattggtgaaggaggtattgcccttgcagaagctgtacatggttcagctcccgatatcgctggcaagaatcttgcgaatccaacgg ccctcctgctgagcagcgttatgatgttacgccacctgaagctgaacgataaagccgatcaaatccacaacgccattctcgacaccatcgcggaa ggtaagcacctgaccgtcgatctcggggggcgctcttcaacgacggagtttacagaagccgtgtgcgatcatctctgagaacttaggcatatcat ctccgttggtttggtgaatttgtaagtttagttctgacagttattttgcgctgtgagatcactttgatgacagtaaaataatgctctcgcgtaat catgttatttttcttgttccgcgatttatgtaaataaacaaaatcaccagcaatcattgaccctctgatatgctgatgctaattttttttgcatt tcttttgaagtgttggtgtttaaacaaaactcctaatttttagctctcaacttttaatgtaaaaaaaa

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c83619_g1_i2

Ac3538

1659564

1659677

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco013591.1 (View in GBrowse)

0.0

100

115

606

1

492