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Species:

Ananas comosus (TPB 2016)

EST ID:

c83557_g1_i1 (View in GBrowse)

Function:

Similar to Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

e-173

pfam04724, Glyco_transf_17, Glycosyltransferase family 17. This

Frame:

Start:

End:

2

242

1405

PEP:

>c83557_g1_i1 MPEAGYYNNSKKTDDICEDVCGEASKAALSMSRLRCALRGFDFRALLILFIGVPLLILFIYVHGQKITYFLRPLWESPPKPFTVIPHYYHENVSM ENLCRLHGWGIRENPRRVFDAVLFSNELDILEIRWNELSPYVSEFVLLESNSTFTGLVKPLYFAKNRRQFEFAESRLTYGTIGGRFVKGENPFVE ESYQRVALDQLIRIAGITDDDLLIMSDVDEIPSGHTIDLLRWCDDIPDKIHLQLRNYLYSFEFYLDDRSWRASVHKYRAGRTRYAHFRQTDDLLA DSGWHCSFCFRRISDFVFKMKAYSHVDRVRFAYFLNPSRIQDVICRGADLFDMLPEEYTFQEIIAKLGPIPRTFSAVRLPGHLLKNVERFRYLLP GNCRRESG

Sequence:

>c83557_g1_i1 agagagagagggagggagagagagggagatcgccgccgaggagatcgatcgtgctccggcgaggaggagcttcctcggcggggggattcgatctc taccactttttctgtttttttttaaaaaaattggttcaattttgggggagaaaaaaggtgggattttttgaataaaaggtgggattttgagggat tttttggggatttttttggtttggtttggtttggtttgctgggttttcgcgatgcccgaggctgggtattataataattccaagaagaccgatga tatatgcgaggatgtttgcggagaggcttcgaaggcggctctgagcatgtcgaggctccggtgcgcgctccgcgggttcgatttcagggccttgt tgattctcttcatcggcgttccgctccttattctattcatctatgttcatggccaaaagatcacctactttctccgccccctgtgggaatccccg ccgaagccgttcacggtgatccctcactattatcatgagaatgtgtccatggaaaacctatgccggctccacggatgggggatccgcgagaaccc ccgccgtgtcttcgacgccgtgctcttcagcaatgagctcgacattctcgaaatccggtggaacgagctgagcccctatgtctcggagttcgtgc tcctcgagtcgaattcaacgttcaccggcctggtcaagcccctctacttcgcgaagaaccggcgccaattcgagttcgcggagtcgaggctgact tacgggacgatcggagggcggttcgtgaaaggggagaaccccttcgtcgaggagtcgtaccaaagagtggctctggatcagcttatcaggatcgc gggaattaccgacgacgatttgttgatcatgtccgacgtcgacgagatcccaagcggccacacgatcgatctcttgcggtggtgcgatgatattc ctgataaaattcacctccagctacggaattacttgtactccttcgagttctacctcgacgaccggagctggagggcctccgtgcacaaataccgt gccgggagaacgagatacgcgcacttccgccagaccgatgacttgctagcggattccgggtggcattgcagcttctgcttccgccgcataagtga cttcgtattcaaaatgaaggcttatagccacgtggacagagtgcggttcgcctacttcttgaacccgtcgaggatccaggatgtcatttgtcgag gggcggatcttttcgacatgctccctgaagaatacactttccaggaaatcattgcaaagttggggccgatcccccgcactttctctgcggtccga ctccccggccacctattgaaaaatgtcgagaggtttagatacctcctcccgggaaattgtagaagagaaagtggctaagttgccgaaacttgtat gagttatttcttacaaaagctataaagggtctccttgggaaactgacgctactaggctgaatgatttgttatttttgggtgtccatgagcgtgga cgagttgtggagatgattatatctctaatgttccattgaagagggcgtatttatttgccgcaggagctcagagggagtatacttacaagggattc gagttcattattctaccgtcttatcggtatgtgatatcacactgttgtagaattcaaacctggtgctagtttttatgttatggaaattggttctt tttccccttgaaactaatttattcatctatttatctttttgaactttgttgtcgcagaatgttttactgactagtaggtttttgtaccatttgat ttgtttatgctctcctctggagaaaattctaatccaagttattgtgatatcttcgca

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c83557_g1_i1

Ac3510

1029819

1030567

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco013529.1 (View in GBrowse)

0.0

99

242

1408

1

1170