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Species:

Ananas comosus (TPB 2016)

EST ID:

c83448_g2_i3 (View in GBrowse)

Function:

Similar to Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

5e-13

pfam06203, CCT, CCT motif. This short motif is found in a number

Frame:

Start:

End:

1

1228

1527

PEP:

>c83448_g2_i3 MSSSEAAVVPDATAQGKDRTVQMDREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRAEVEAEVGKIYSSAAAAVAALMADSDYG VVPSF

Sequence:

>c83448_g2_i3 ggaggaggaggaagaagaggaggaagtagaagagacggaggcggaggcggcgtcgtggctgcttccggagccaactgcgaaggaggcgctgctgc cggccgacatggtgggggcggtcgccggggaggacttgttcttcgcagactatccgtatcttgatctgaattatgccgtgccgccgccgccgcag ccgccgatcctcgcagcagacagcggctttcaggatgccgttacggatctcggcgccgccaccgcagccgccggatccaagcactcctacggcgc ctatccggatcactccctaaatcacagtgtaattatcttaaccccttttgcttaaagtagtaaaatatcgttccccaacagcaatatacataaat atttatgaaaaataaagtaaaatgtaaattttctacaatgtaaaatacgcggcatcgatcggacacgatcacctcaaaagattcatgttacttgt attctcatttaattttgagtatgaattttctacaatttaaaacaaaacagtaggcaccgattggacaccattttcatataaaaaaaaggggatga ttctgatgcatactgtagatctgttgtcgtattaaataagcctattggttacgtcaaaaaaaattttcgagaaagatgttgttttattatcaaat taaaaaatcatcaaaaatgacaaagaactacacagtagatggacatgatcgtaaaatttcatcggtaacatcaagagcttttgtattttcatctc ttctaacatagaagataataatatttgaatacaactgcaataaattcctacactaattactttaaacaaccgaggctcaatttaatagtttgtta aaaatctcattacaggcattgctataaatagcattactaaaaattgaccatgaactaacaatttgaaaaaaatagtacataatattccttcatca gtcgagccggcaattattggtacatcaaattagattgatacatctgagccgtccatattttgaggccactatcatttctctagttctctagttca agtcggcattttgaacgaacaaaaattcgagttcaaatatgaaaagaatattaaacataaacaaaaactgttaatgttctctagtaatttaagct tttaaagaataactgagcgctagcgaggtagttcacagctttattgttgattttgttgatcttcggggcaattgtatggatttgtagatgtcgtc atcggaggcagcggtggtgccggatgcgacagcgcaggggaaggaccggacggtgcagatggatcgggaggcgagggtgatgcggtaccgagaga agcggaagaatcggcgattcgagaagacgatacggtacgcatcgagaaaggcatatgcagagacgcggccgcgcattaaggggaggttcgcaaag cgggcggaggtcgaggccgaggtcgggaagatctactcctcggccgccgccgctgtcgccgccctcatggcggactccgactacggcgttgtacc atcattctaagatacatggatatgtatataatcaacattcttatttctcttccgctcttcggcttgtgacgagttcagctcaacgaagtacacac gaacaaactatttcatgaaggctttattcaaaccacgcatctcactttttttatgtcaccattatttctgtagcaaattcaatacaaaaatagca aaaaaattttgcgaattagtttgttagtccacacttcgctgagctgaactcactcttagaaaataaaaatgtgccaagaacgctcaagtataggc attttgaaatgggcctctcagctttatatatatttaatcaactcttgctcaacttccaatctagttaattagctaccagttattaactatatatg ttaattttgtttgctgaaaaataattaaagccattaaatttaatgaaattaactgttagttcaattagctgaaatcactttatttaaaaaaatga aaatgttaaaaaagtgttaataaaaaagaatgaagttggaaggactatttcgtactggactataagtgagggggtcttcatacattaatttttac catatgtagcattaatatatcatcatgttgtaatttctctgccctttttattgtaatatatatatcatatgtaaattattactattgcaaaaagt ttttatttaaaacaaagagggtaatgactttttggt

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c83448_g2_i3

c83448_g2_i1

8793944

8794859

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco028438.1 (View in GBrowse)

e-177

100

1

313

576

888