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Species:

Ananas comosus (TPB 2016)

EST ID:

c83420_g1_i1 (View in GBrowse)

Function:

Highly similar to Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

antisense complete

Domain Search E-Value:

Domain / Pfam ID:

4e-21

pfam01138, RNase_PH, 3' exoribonuclease family, domain 1. This

Frame:

Start:

End:

-3

96

1049

PEP:

>c83420_g1_i1 MATTARGGGEREPAAGSGGGGGAAAEMEVEAYRRLFPVAYFERHLRESVRLDARPLASPRDTSVALGLVGSADGSALVKFGDTTMVAAIKLEVMT PPAESSDEGSVAVEFYMPPICSPTVRPGRSAEVAPVISKQLSDVIMSSGMINLKDLCLINGKASWIAYLDIYCLNADGSLFDAALVSAVAAFTHL EIPLVSVSDDGRVVTVPGELEGKTKLPLVNKDKRKLMLNNVPFSLTCGLHKEHILVDPTAEEESIIETFVTVVLDTLGRVVSVYKPGGSVLAYTS ILKECITLAKRRAQQLRNILNESVSAMEVDKSS

Sequence:

>c83420_g1_i1 ccgtcattgaatcgcttgcaagcgcagctaatgaatcaactttcgagttatattatcttactaactaaactttcgagttataaacacaatcaaag aagataaactcagatacatgccaattcccattctcataagttgttagcatgtcacatcacatcactactatttctaacattttccctaaactatt tgatgtagcaggttaaatgtatcacacaaacacagatgtttcctttttcacatttcagaatcagaaaagaatacgtaaaaagtgatttgattaac attagtagtacttacgaagatttatcaacttccatggcggaaacggattcattcaagatattccttagctgctgcgccctacgtttagcgagagt gatgcactccttaagaatcgatgtgtaggcaagaacagaacctcccggtttgtatactgaaacgacgcgacccaaagtatctagcacgacagtaa caaaggtctctattatggattcctcttcggcagtgggatctaccaagatatgttccttatggagtccgcatgtgagggaaaaggggacattgttg agcatgagcttcctcttatctttgttgaccaacggaagtttagttttgccttcaagttcccccggcacagtgactactcttccatcgtcactgac cgaaactagagggatttccaggtgtgtgaatgcagcgactgctgaaactagcgcagcatcaaagagagagccgtcagcattcagacagtagatat ccaagtaggctatccatgaggcttttccatttattaagcacaggtccttcaagtttatcatcccagaactcataatgacgtccgacaactgctta gagatgacgggcgccacctcagccgacctcccgggcctaacggtcggagaacaaattggcggcatgtagaactcgacggcaacggaaccctcatc tgaagattctgccggaggggtcatcacctcaagtttgatagcagccaccatagtagtgtcgccgaacttgacgagggcggacccgtcggcggagc cgacgaggccgagggctacggaggtgtcgcgcggggaggcgagggggcgcgcgtcgaggcgcacggactcgcggaggtggcgctcgaagtaggcg acggggaagaggcgccggtacgcctccacctccatctccgccgcagctccccctcctccgccgctccccgccgccggctctctctcgccgccgcc gcgcgcggtcgtcgccatgctcgtccctgctccctcggcgacctcggcgcgttcgaagttgctcagagcgtgcgggcgctgggaacgcggtgtgt gtccgcgagatcggaagg

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c83420_g1_i1

c71710_g1_i1

875740

876250

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco013512.1 (View in GBrowse)

0.0

99

297

1253

957

1