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Species:

Ananas comosus (TPB 2016)

EST ID:

c80788_g1_i3 (View in GBrowse)

Function:

Homologous to Calmodulin-binding receptor-like cytoplasmic kinase 3 OS=Arabidopsis thaliana GN=CRCK3 PE=2 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

antisense complete

Domain Search E-Value:

Domain / Pfam ID:

4e-23

pfam07714, Pkinase_Tyr, Protein tyrosine kinase.

Frame:

Start:

End:

-1

631

1317

PEP:

>c80788_g1_i3 MLATPGMFLVFTFICPCFGSKRTDISEDPVLARDMNSMDSSELRSSSDRIPGTPLRVPPSPSRFSLSQQPTAIGPLHLSINQIIKITHNFSPAKV IGDGGFGTVYKADLPDGRPIAIKRAKKEHFAALHEEFRNEVALLTKIEHRNLVKLLGYVENKSERIIITEYVPNGTLREHLDGQHGRILDFSQRL EIAIDVAHGLTYLHLYAGEISEYDVLLHITYKQKRERER

Sequence:

>c80788_g1_i3 tctctctctctctctcttttgcttataggttatgtgcaagagtacgtcatattctgaaatttcacctgcataaaggtggagataagtcagtccat gagcaacatcaatggctatttccagccgttggctgaagtccagaatcctcccatgctgaccatctaaatgctccctaagagtgccatttggaaca tactcggtaatgataattcgttcacttttattttcaacgtaaccaagtaatttgactaagttcctatgttcgattttggtgagcagtgcaacttc atttctaaattcctcatgtaaagcagcaaagtgttccttttttgcccttttaatagcaataggcctcccatcaggaaggtcagctttgtaaacag ttccaaagccaccgtcgcctattacttttgcaggtgaaaaattatgagtaattttaataatctgattgatgctcagatgcagtggcccaatagca gttggttgttgagacaatgaaaatctagaaggacttggaggcactcgcagtggagttccaggaattctatcagaagatgatctcagttcagaaga atccattgaattcatatctctggctaaaaccggatcctcacttatatccgtccttttcgatccaaagcaaggacaaatgaaggtaaatacaagaa acattcctggagtagctagcataacatgatctgactccagtgtgcaactatgatattttcacttttagcctttttgtagcttttcctttaagtta gttcatgaaagataagcagaaagtcctcttctataccattaagcacgtcctctcagaaatggacgcacatcaccggcgaagaacacaaatcacca gatccttccctaattcttctccgaatcacaagtgaaacgacacccactgtacaatcccaactcaatctccggcatcaaacccacatcactacagc aatcgctataatcggaactaaatagcgaatacccaaagaccaaattcaccaaattcgccaaatttcgggggaaaaaccagcaaaaccctagaaga aacaatctaaaccctagaaaactcaatccgagctcaaattaatcacctgtaaaagctccaattccttgattaacacaaaatccccctttaataag cttcagatacgatctttatactacaagaaccatcttcggggattcgaagatagagagagagatatgtgatgtgtacgattgattgaaaaaggtgg agtttgcgtttataacaatggcgacgtaggcaagtgcgcgaatttgaccattggggagggtcggaggagacttgtgttgact

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c80788_g1_i3

c80788_g1_i2

7580914

7581770

+

1^2-,0

intron retention

LG20

c80788_g1_i3

c80788_g1_i1

7580661

7580914

+

1-2^,0

exon skipping

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco018917.1 (View in GBrowse)

0.0

99

66

687

622

1