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Species:

Ananas comosus (TPB 2016)

EST ID:

c79516_g1_i1 (View in GBrowse)

Function:

protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1

Full Length Predict:

Start Codon Status:

Strand and Stop Status:

Full-length

Yes

sense complete

Domain Search E-Value:

Domain / Pfam ID:

4e-58

pfam00481, PP2C, Protein phosphatase 2C. Protein phosphatase 2C is

Frame:

Start:

End:

2

305

1156

PEP:

>c79516_g1_i1 MGYWSSVVGNQSDGSPVSGGGLSQHEKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKQHLFSNLIKQPKFISDTK SAIASAYSETDLEFLKSENNENRDAGSTASTAVLVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLA VSRAFGDRLLKQYVVADPEIKEEVIDGSLEFLILASDGLWDVVSNEEAVAIVRPIEDPEQAAKKLLQEAYQRGSADNITCVVVRFLSGQDSDAK

Sequence:

>c79516_g1_i1 aaaaaaaaaaaaatccaacggtctctctcgctccctgcccctctgcccccctgcccctctcccccttcatttctcctcctctcaccaccaccata caccagacccacaaatccgttgttggtttcgtcctcctcctgcgctgcgctcggtttgggtttgtttcccatctcctcctatttcaaagaatcct cttccataatcagaatcaatttcgcttccttcgacagggtcgttcgactttgatctacaactgggcgacgaggccgccaaaacgagcgagaaaag agaagggattggcgattcgatgggttattggagttccgttgttgggaaccaatcggatgggtcccccgttagcggcggagggctcagtcaacatg agaaattcagttatggctatgcaagttctccagggaaaaggtcttccatggaggacttttatgagacaagaattgatggcgtcgatggagagatt gtcggcttgtttggagtctttgatggtcatggtggtgctagagctgcagaatacgtcaagcagcaccttttcagcaatttaattaagcagccaaa attcattagtgataccaagtcagctatagcttctgcatacagcgagactgatttagaatttctgaaatctgaaaataatgaaaaccgagatgctg gatcaactgcttcaactgctgtccttgttggcgaccgtttgctagttgctaatgttggggactctagggctgttatatgcaggggagggaatgct atagctgtctcgagagatcacaagcctgaccaaactgatgagcgacaaaggattgaggatgctggaggttttgtgatgtgggctggaacatggcg tgtcggcggtgttctcgctgtatctcgcgctttcggtgataggctcctgaagcagtatgttgttgctgatccagagattaaggaagaagtgatcg atgggtctctcgagtttctcattcttgcaagtgacgggctatgggatgttgtctcgaacgaggaggctgttgccattgtcagaccgatagaagac ccagaacaggcagcaaagaagctcttgcaagaggcttatcaaagaggaagcgcagataacatcacttgtgttgtcgtgcgtttcttatccggaca ggatagcgatgccaagtagaaagatggagaaaaggttactttcttgttacaatggaagcttctctgcatgtccctgcaatcaatgtaaagatagt atctgaaaaagtcaaataaaaagaactgcttatggagaaagcacttttcgactgatggaatatgttgtttacatttccagcctctaataggaact agtagaagatagtaaatgtatgatgtaccggtctgtattctgtaaggactaatggatctaatgtctaatgctagaagaaatcaatttattttcct gctatgctttgtaggctatatattacgctttttctccttgaactatgaggtgagtgataccttgattctcaaatttaattcattgtaatttttgg tcgatttgttagatcgttaaaaa

Alignment:

View alignment

Alternative Splices:

Genome ID:

EST ID 1:

EST ID 2:

Start:

Stop:

Strand:

AS Code:

AS Type:

LG20

c79516_g1_i1

Ac2284

4554653

4555132

+

1^2-,0

intron retention

LG20

c79516_g1_i1

JI407009.1

4549323

4549397

+

1^2-,0

intron retention

LG20

c79516_g1_i1

c64825_g1_i1

4555223

4555547

+

1^2-,0

intron retention

CDS / EST BLASTN:

Gene

e-Value

Identity

G Start

G End

E Start

E End

Aco023383.1 (View in GBrowse)

0.0

99

227

1159

106

1038