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Species:
Ananas comosus (TPB 2016)
EST ID:
c76039_g1_i2 (View in GBrowse)
Function:
Homologous to Formin-like protein 6 OS=Oryza sativa subsp. japonica GN=FH6 PE=2 SV=2
Full Length Predict: Start Codon Status: Strand and Stop Status:
3'-sequenced partial Yes antisense complete
Domain Search E-Value: Domain / Pfam ID:
2e-28 pfam02181, FH2, Formin Homology 2 Domain.
Frame: Start: End:
-2 17 496
PEP:
>c76039_g1_i2
MTLMHYLCKVLADKLPDVLDFQKDLVNLEAASKIQLKYLAEEMQAIQKGLEKVEQELTASESDGPISETFHKTLKEFLVVAEAEVRSLTSLYSAV
GRNADALALYFGEDPVRCPFEQVVSTLLSFMKMFERANEENLKQLEMEKKKAQKEAEKSKIAAQK
Sequence:
>c76039_g1_i2
gcacccaatttctattcattataaatgttttcaaaacaaaaaaacacacgaagaagatggatcgcataactggaaaaaaatcaaagaccatgcag
cttctggtatacaagagttacatacaattttgtacagtttccgtaattcagaaaatatatacacatgctacaactaaaaaaggaaaaagaagata
taaaattaaccactatctcatctgctaaattttacagcaagaatagtttaggctaaaatttatggtacatattatctaccaggtagtcttcttga
gacaaacaatcttctcgccttcttaagacgaactttctaacaaggattttgttgtcgagctgggttcctcgataataatgttcacgtttttatcg
gcatgagtaatgaaatcccagctcagatcctgtgattttcctttacattttatggtgtgctacgggcctgcagcagttctctccgaggtggagaa
actactgtgtgtggtttgtcggaccaatttctaggttatgaatacagattaacacgtgtcgcagcatttaattggagaaatagagatatcttttc
acttttgagcggcgattttcgatttctctgcttctttttgagcttttttcttctccatctctagctgtttgaggttctcttcgttggcgcgctcg
aacattttcatgaagctgagtagcgtagagacaacttgctcaaatgggcaacgtacaggatcttctccaaaataaagagccagtgcatctgcatt
cctacccaccgcagaatatagggatgttaaagacctcacttcagcttcagcaacaacaagaaactccttcaaagtcttatggaatgtttcagata
taggaccatcactttccgaagctgtcaactcttgttcaactttttctaaccctttttgtatagcttgcatttcttcagccaagtacttcaattgt
atctttgatgcagcttctaagttaacaagatccttttggaagtcgagaacatctggtagtttatccgcaagaaccttgcacaaataatgcatgag
agtcat
cttattgtttcgtgca
Alignment:
View alignment
Alternative Splices:
Genome ID: EST ID 1: EST ID 2: Start: Stop: Strand: AS Code: AS Type:
LG20 c76039_g1_i2 c76039_g1_i1 8077476 8077565 + 1^2-,0 intron retention
CDS / EST BLASTN:
Gene e-Value Identity G Start G End E Start E End
Aco019683.1
(View in GBrowse)
0.0 99 569 1067 3693 3195