SL3.0ch12	CUFF.31055.1	mRNA:Solyc12g008390.2.1	1826629	1826721	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31054.1	mRNA:Solyc12g008370.2.1	1802120	1802190	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31046.1	mRNA:Solyc12g007210.2.1	1634690	1634764	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31024.1	CUFF.31024.3	1441554	1442700	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g007000.2.1	CUFF.31024.3	1441478	1441531	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31020.2	mRNA:Solyc12g006995.1.1	1429165	1429195	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31018.1	mRNA:Solyc12g006980.1.1	1412729	1413087	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31072.1	mRNA:Solyc12g008540.2.1	1949085	1949304	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31067.2	mRNA:Solyc12g008473.1.1	1887173	1887256	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g018490.3.1	CUFF.24249.2	15082165	15082260	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24207.2	mRNA:Solyc09g018310.3.1	14435241	14435377	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14917.4	mRNA:Solyc05g032670.2.1	46152466	46153689	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14933.1	mRNA:Solyc05g039940.2.1	48639396	48639945	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14936.2	CUFF.14936.3	49187325	49187613	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g039990.3.1	CUFF.14941.2	49431514	49431724	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24289.1	mRNA:Solyc09g018695.1.1	16677193	16677262	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g007980.3.1	CUFF.600.2	2099263	2099340	+	1^2-,0	intron retention
SL3.0ch01	CUFF.594.1	mRNA:Solyc01g007955.1.1	2073895	2073961	-	1^2-,0	intron retention
SL3.0ch01	CUFF.640.2	mRNA:Solyc01g008485.1.1	2508945	2509033	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31122.2	mRNA:Solyc12g009040.2.1	2338110	2338151	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g008790.2.1	CUFF.31094.2	2137113	2137178	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g008790.2.1	CUFF.31094.2	2139668	2139939	+	1^2-,0	intron retention
SL3.0ch01	CUFF.619.2	mRNA:Solyc01g008270.3.1	2324234	2324326	+	1^2-,0	intron retention
SL3.0ch01	CUFF.629.1	CUFF.629.2	2427046	2427116	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g008890.2.1	CUFF.31106.3	2201539	2201636	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31148.1	mRNA:Solyc12g009415.1.1	2694450	2694522	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g015870.3.1	CUFF.24145.3	11300338	11300370	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g015880.3.1	CUFF.24145.4	11304419	11304453	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g015850.3.1	CUFF.24143.2	11298676	11298736	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24142.1	mRNA:Solyc09g015830.2.1	11277038	11277426	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24142.1	mRNA:Solyc09g015840.3.1	11276988	11277099	-	1^2-,0	intron retention
SL3.0ch01	CUFF.658.1	mRNA:Solyc01g008890.3.1	2844730	2844775	-	1^2-,0	intron retention
SL3.0ch01	CUFF.667.1	mRNA:Solyc01g008970.3.1	2920648	2921375	-	1^2-,0	intron retention
SL3.0ch01	CUFF.667.1	CUFF.667.3	2923996	2924168	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g018160.3.1	CUFF.24183.2	13389159	13389237	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24184.1	mRNA:Solyc09g018170.3.1	13404289	13404404	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14871.1	mRNA:Solyc05g026500.1.1	41621329	41621455	+	1^2-,0	intron retention
SL3.0ch01	CUFF.676.1	mRNA:Solyc01g009070.3.1	3013859	3013957	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24168.1	mRNA:Solyc09g018050.1.1	12706787	12707028	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g015650.3.1	CUFF.24127.2	10587173	10587309	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15062.1	mRNA:Solyc05g041850.1.1	54639305	54639586	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24090.1	mRNA:Solyc09g015457.1.1	8841910	8842194	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24045.2	mRNA:Solyc09g015070.3.1	7891046	7891109	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24045.2	mRNA:Solyc09g015070.3.1	7890628	7890690	-	1^2-,0	intron retention
SL3.0ch12	CUFF.30960.1	mRNA:Solyc12g006230.2.1	745312	745510	-	1^2-,0	intron retention
SL3.0ch12	CUFF.30975.1	mRNA:Solyc12g006420.2.1	903116	903288	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14965.1	mRNA:Solyc05g040100.3.1	49932530	49932607	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14965.1	CUFF.14965.4	49935686	49935798	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g006510.2.1	CUFF.30981.2	1020952	1021021	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g006790.2.1	CUFF.31001.2	1204742	1204795	-	1^2-,0	intron retention
SL3.0ch12	CUFF.30995.1	mRNA:Solyc12g006710.2.1	1167780	1167851	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g006670.2.1	CUFF.30994.2	1132899	1133010	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g006620.2.1	CUFF.30992.2	1094724	1094812	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15031.2	mRNA:Solyc05g041530.3.1	52957565	52957665	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g041430.3.1	CUFF.15020.2	52556957	52557497	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g041420.3.1	CUFF.15019.2	52531200	52531270	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g041220.2.1	CUFF.14989.2	51398909	51398973	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g041117.1.1	mRNA:Solyc05g041140.3.1	50437758	50437995	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g014710.3.1	CUFF.23999.2	6770914	6771009	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24004.1	mRNA:Solyc09g014790.3.1	6943414	6943655	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24027.1	mRNA:Solyc09g014990.3.1	7397324	7397430	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24025.1	mRNA:Solyc09g014980.3.1	7381962	7381984	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15201.1	mRNA:Solyc05g044590.1.1	57993485	57993661	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15202.1	CUFF.15202.2	58016675	58016809	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15203.1	mRNA:Solyc05g044610.2.1	58027590	58027612	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15208.2	mRNA:Solyc05g044615.1.1	58043126	58043187	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15208.2	mRNA:Solyc05g044615.1.1	58039460	58040234	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g045773.1.1	mRNA:Solyc05g045780.1.1	58426894	58426954	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23988.1	mRNA:Solyc09g014555.1.1	6195264	6195394	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g014680.1.1	mRNA:Solyc09g014627.1.1	6524045	6524185	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g014410.3.1	CUFF.23973.2	6033802	6034690	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23954.1	mRNA:Solyc09g013140.2.1	5547436	5547601	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g013070.3.1	CUFF.23950.2	5484037	5484422	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g011910.3.1	CUFF.23938.2	5173825	5173944	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g011091.1.1	mRNA:Solyc01g011092.1.1	7562197	7562544	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g011091.1.1	mRNA:Solyc01g011093.1.1	7565907	7566051	+	1^2-,0	intron retention
SL3.0ch01	CUFF.843.1	mRNA:Solyc01g010933.1.1	6390101	6390164	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15152.2	CUFF.15152.1	57131697	57131849	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15152.2	mRNA:Solyc05g043390.2.1	57131449	57131523	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g043213.1.1	mRNA:Solyc05g043220.1.1	56408200	56408242	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g011740.3.1	CUFF.23929.2	5037800	5037875	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g011220.3.1	mRNA:Solyc09g011235.1.1	4563007	4563403	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23899.1	mRNA:Solyc09g011330.2.1	4671330	4671430	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g011305.1.1	CUFF.23894.2	4652610	4652696	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g011295.1.1	CUFF.23892.2	4632599	4632651	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23900.1	mRNA:Solyc09g011350.2.1	4686525	4686685	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g011350.2.1	CUFF.23900.3	4686372	4686479	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23884.1	mRNA:Solyc09g011140.3.1	4500283	4500370	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g013885.1.1	CUFF.932.2	10239915	10240487	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g044490.2.1	CUFF.15174.2	57474676	57474778	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15159.1	mRNA:Solyc05g043410.1.1	57156835	57157354	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g050520.3.1	CUFF.15355.2	61519742	61520480	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g050280.3.1	CUFF.15327.2	61200478	61200787	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g010380.3.1	mRNA:Solyc09g010385.1.1	3766946	3766978	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g009170.3.1	CUFF.685.2	3139554	3139672	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23859.1	mRNA:Solyc09g010640.2.1	3969952	3970031	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g010770.3.1	CUFF.23864.2	4061331	4061396	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g009715.1.1	mRNA:Solyc01g009720.2.1	3934030	3934169	-	1^2-,0	intron retention
SL3.0ch01	CUFF.699.1	mRNA:Solyc01g009390.3.1	3530543	3530700	-	1^2-,0	intron retention
SL3.0ch01	CUFF.707.1	mRNA:Solyc01g009565.1.1	3755891	3755989	+	1^2-,0	intron retention
SL3.0ch01	CUFF.728.1	CUFF.728.2	4426181	4426264	-	1^2-,0	intron retention
SL3.0ch01	CUFF.728.1	CUFF.728.2	4425776	4425857	-	1^2-,0	intron retention
SL3.0ch01	CUFF.728.1	mRNA:Solyc01g009920.2.1	4424092	4424172	-	1^2-,0	intron retention
SL3.0ch01	CUFF.731.1	mRNA:Solyc01g009930.2.1	4457460	4458921	-	1^2-,0	intron retention
SL3.0ch01	CUFF.737.2	mRNA:Solyc01g010035.1.1	4598052	4598306	+	1^2-,0	intron retention
SL3.0ch01	CUFF.725.2	mRNA:Solyc01g009870.3.1	4340156	4340242	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g047710.3.1	CUFF.15294.2	60044354	60044432	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15276.2	mRNA:Solyc05g046360.3.1	59662990	59663074	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g046280.2.1	CUFF.15259.2	59319732	59319774	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15262.2	mRNA:Solyc05g046287.1.1	59325220	59326981	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g010130.3.1	CUFF.747.2	4806119	4806131	+	1^2-,0	intron retention
SL3.0ch01	CUFF.747.2	mRNA:Solyc01g010135.1.1	4806270	4806445	+	1^2-,0	intron retention
SL3.0ch06	CUFF.15850.1	mRNA:Solyc06g005050.3.1	24561	24594	-	1^2-,0	intron retention
SL3.0ch01	CUFF.800.1	mRNA:Solyc01g010720.3.1	5689436	5689464	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g010780.3.1	CUFF.811.2	5776343	5776416	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15308.1	CUFF.15308.2	60461991	60462065	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15308.1	CUFF.15308.3	60461768	60461909	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g029115.1.1	CUFF.21997.2	38294745	38294986	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g029050.3.1	CUFF.22001.1	38359227	38359305	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21999.2	mRNA:Solyc08g029090.3.1	38298570	38298638	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28434.1	mRNA:Solyc10g084530.1.1	64138918	64138972	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g084540.2.1	CUFF.28435.2	64150345	64150675	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28451.2	mRNA:Solyc10g084690.2.1	64250634	64250719	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28452.2	mRNA:Solyc10g084730.2.1	64270277	64270364	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1078.1	mRNA:Solyc01g015020.3.1	16537562	16537680	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28482.1	mRNA:Solyc10g085225.1.1	64620345	64620430	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21963.1	mRNA:Solyc08g029240.3.1	37395148	37395213	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21968.1	CUFF.21968.3	37500690	37500733	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g029348.1.1	CUFF.21962.2	37204561	37204620	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28456.1	mRNA:Solyc10g084760.2.1	64299027	64299121	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g084770.2.1	CUFF.28459.2	64317654	64317725	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28471.1	CUFF.28471.2	64394826	64395031	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28466.1	mRNA:Solyc10g084860.1.1	64369891	64369949	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g084870.1.1	CUFF.28467.2	64372999	64373044	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g084940.2.1	CUFF.28472.2	64414214	64414290	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28477.1	mRNA:Solyc10g085075.1.1	64519081	64519248	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21905.1	mRNA:Solyc08g022070.3.1	33108710	33109097	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g022080.3.1	CUFF.21900.2	32521407	32521503	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g017180.2.1	mRNA:Solyc01g017190.1.1	23805667	23805676	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g021920.3.1	CUFF.21914.2	34312419	34312489	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28509.1	mRNA:Solyc10g085640.1.1	64884720	64884781	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28493.1	mRNA:Solyc10g085430.2.1	64737315	64737568	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g085460.2.1	CUFF.28497.2	64750249	64750407	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28496.1	mRNA:Solyc10g085440.1.1	64745321	64745463	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28489.2	mRNA:Solyc10g085330.2.1	64675054	64675159	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g085985.1.1	CUFF.28532.2	65094877	65098849	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28533.1	mRNA:Solyc10g085990.2.1	65103646	65103690	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28516.1	mRNA:Solyc10g085790.2.1	64999703	64999868	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28526.1	mRNA:Solyc10g085910.2.1	65052668	65053382	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g023490.3.1	CUFF.21825.2	27664840	27665054	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19760.1	mRNA:Solyc07g041210.3.1	52113728	52113826	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g014140.3.1	CUFF.948.2	11629920	11630000	+	1^2-,0	intron retention
SL3.0ch01	CUFF.970.1	CUFF.970.2	11867004	11867246	+	1^2-,0	intron retention
SL3.0ch01	CUFF.970.2	mRNA:Solyc01g014245.1.1	11867294	11868961	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g023420.2.1	mRNA:Solyc08g023410.1.1	28000788	28000836	+	1^2-,0	intron retention
SL3.0ch01	CUFF.997.1	mRNA:Solyc01g014490.3.1	13922123	13922295	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g041330.2.1	CUFF.19779.3	52523972	52524004	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19796.1	mRNA:Solyc07g041750.3.1	54202187	54202271	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g083165.1.1	CUFF.28332.2	63160235	63160329	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19792.1	mRNA:Solyc07g041640.3.1	53942653	53942735	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28324.1	mRNA:Solyc10g083120.2.1	63119498	63119887	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g083190.2.1	CUFF.28339.2	63178453	63178609	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28340.1	mRNA:Solyc10g083220.2.1	63206107	63206202	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g042130.3.1	CUFF.19827.3	55237298	55237507	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g042135.1.1	mRNA:Solyc07g042150.3.1	55247663	55247677	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g042100.3.1	CUFF.19826.2	55202226	55202311	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g042100.3.1	CUFF.19826.2	55203181	55203265	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19814.1	mRNA:Solyc07g042000.3.1	54925967	54926190	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28348.1	CUFF.28348.3	63334920	63335024	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g083550.1.1	CUFF.28355.2	63457759	63457839	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g083567.1.1	CUFF.28358.2	63481277	63481319	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21720.2	mRNA:Solyc08g042130.2.1	23815306	23815412	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28359.1	mRNA:Solyc10g083590.2.1	63504870	63504985	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28366.1	mRNA:Solyc10g083640.2.1	63555449	63556084	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21731.1	mRNA:Solyc08g042060.2.1	24001411	24002034	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g014940.1.1	CUFF.1064.2	15955351	15955435	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1054.2	CUFF.1054.1	15506740	15507158	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1054.2	mRNA:Solyc01g014840.3.1	15505513	15505592	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21766.1	mRNA:Solyc01g105480.3.1	25790640	25790730	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21769.2	mRNA:Solyc08g041760.2.1	25958538	25958623	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g041750.2.1	CUFF.21770.2	25959129	25959190	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21771.1	mRNA:Solyc08g041740.1.1	25969006	25969207	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g023650.3.1	CUFF.21780.2	26791523	26791696	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19845.1	mRNA:Solyc07g042297.1.1	55541303	55541421	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28377.2	mRNA:Solyc10g083770.2.1	63656467	63656527	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19839.1	mRNA:Solyc07g042270.3.1	55522507	55522595	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28378.1	mRNA:Solyc10g083795.1.1	63666399	63666486	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19838.1	mRNA:Solyc07g042260.3.1	55488100	55488164	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28383.1	mRNA:Solyc10g083830.2.1	63702319	63702409	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19856.1	mRNA:Solyc07g042440.3.1	55701644	55701739	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19852.1	mRNA:Solyc07g042400.2.1	55659475	55659606	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28400.1	CUFF.28400.3	63841025	63842265	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28400.2	CUFF.28400.3	63842365	63845569	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28400.2	mRNA:Solyc10g084045.1.1	63840834	63840905	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19871.1	mRNA:Solyc07g042500.3.1	55885484	55885548	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19871.1	mRNA:Solyc07g042500.3.1	55890012	55890100	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g084090.2.1	CUFF.28406.2	63880303	63880573	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28403.2	CUFF.28403.3	63875946	63876177	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28403.3	mRNA:Solyc10g084085.1.1	63876269	63876731	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19882.1	CUFF.19882.3	56197268	56197719	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19882.3	mRNA:Solyc07g042600.2.1	56197006	56197109	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g042843.1.1	CUFF.19905.2	56494725	56494802	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g084330.1.1	CUFF.28422.2	64047227	64047291	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1012.1	mRNA:Solyc01g014560.3.1	14270138	14270217	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g042740.3.1	mRNA:Solyc07g042745.1.1	56383855	56383882	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g042750.3.1	CUFF.19890.2	56384820	56384909	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g006170.2.1	CUFF.28674.7	918674	919275	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28679.1	mRNA:Solyc11g006180.2.1	929921	929944	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g006245.1.1	CUFF.28687.4	997424	997518	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28687.1	CUFF.28687.3	998971	999508	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21699.1	mRNA:Solyc08g044370.2.1	21366012	21366083	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19610.2	CUFF.19610.1	47588628	47588935	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19604.1	mRNA:Solyc07g039380.3.1	47457081	47457160	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g039345.1.1	CUFF.19603.2	47411205	47411643	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g039390.1.1	mRNA:Solyc07g039388.1.1	47534380	47534395	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19608.2	CUFF.19608.1	47549309	47549487	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19608.2	mRNA:Solyc07g039410.3.1	47549743	47549822	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19597.2	mRNA:Solyc07g039340.3.1	47301805	47301894	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19564.1	mRNA:Solyc07g038160.3.1	45619683	45619801	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19566.2	mRNA:Solyc07g039195.1.1	45679621	45679712	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6394.2	mRNA:Solyc02g081550.3.1	46019918	46020011	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6394.2	mRNA:Solyc02g081550.3.1	46021383	46021483	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6391.1	mRNA:Solyc02g081535.1.1	46015137	46015162	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19615.1	mRNA:Solyc07g039510.3.1	47738911	47739078	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6375.1	mRNA:Solyc02g081420.3.1	45953454	45953534	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g081480.3.1	CUFF.6381.2	45986874	45986920	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19619.1	mRNA:Solyc07g039550.3.1	47840229	47840380	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g081500.3.1	mRNA:Solyc02g081505.1.1	45989549	45989566	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g081500.3.1	CUFF.6383.3	45994079	45994175	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g081230.3.1	CUFF.6356.2	45821921	45821966	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6357.3	mRNA:Solyc02g081250.2.1	45845040	45845066	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6367.1	mRNA:Solyc02g081320.3.1	45884315	45884548	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6344.1	mRNA:Solyc02g081010.2.1	45625548	45625640	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g080970.3.1	CUFF.6332.2	45598933	45599012	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g080940.3.1	mRNA:Solyc02g080950.2.1	45587121	45587530	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28711.1	mRNA:Solyc11g006590.2.1	1219728	1220081	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28711.1	mRNA:Solyc11g006597.1.1	1221688	1221734	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28704.1	mRNA:Solyc11g006520.2.1	1183423	1183511	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28696.2	mRNA:Solyc11g006465.1.1	1151355	1151452	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g007170.2.1	CUFF.28764.2	1607389	1607472	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g048250.3.1	CUFF.21594.2	14509088	14509195	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g031680.2.1	CUFF.24542.2	28370607	28370679	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24545.1	mRNA:Solyc09g031685.1.1	28356493	28356586	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g031770.3.1	CUFF.24530.2	28170178	28170873	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g031790.3.1	CUFF.24522.2	27989852	27989924	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g048370.3.1	CUFF.21573.3	13398314	13398430	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g040660.3.1	CUFF.19659.2	49381317	49382776	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24498.2	mRNA:Solyc09g042785.1.1	25833216	25833304	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19671.1	mRNA:Solyc07g040695.1.1	49511239	49512477	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g040970.1.1	CUFF.19730.2	51356729	51356772	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6314.1	mRNA:Solyc02g080520.3.1	45287294	45287517	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g041070.3.1	CUFF.19745.2	51873371	51873471	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6321.1	mRNA:Solyc02g080660.3.1	45393035	45393372	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g041150.3.1	CUFF.19750.2	52007136	52007224	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6276.1	mRNA:Solyc02g080080.3.1	44948067	44948158	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6276.1	mRNA:Solyc02g080080.3.1	44946581	44946767	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6278.2	CUFF.6278.1	44955061	44955244	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6288.1	CUFF.6288.2	45028007	45028200	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6288.1	mRNA:Solyc02g080165.1.1	45028249	45028930	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g080230.3.1	CUFF.6292.2	45062312	45062391	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19717.5	CUFF.19717.3	51092135	51092186	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19717.5	CUFF.19717.3	51091774	51091816	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19717.4	CUFF.19717.3	51092010	51092060	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6304.2	mRNA:Solyc02g080355.1.1	45157887	45157967	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g007485.1.1	CUFF.28786.2	1763804	1763835	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21554.1	mRNA:Solyc08g048430.3.1	13019721	13019875	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g007370.2.1	CUFF.28783.3	1739407	1739430	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28783.3	mRNA:Solyc11g007390.1.1	1739612	1739665	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21569.2	CUFF.21569.1	13157831	13157872	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21569.2	mRNA:Solyc08g048390.2.1	13157986	13158059	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21569.1	mRNA:Solyc08g048390.2.1	13159862	13160028	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g007310.2.1	CUFF.28777.2	1692573	1692643	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28769.1	mRNA:Solyc11g007230.1.1	1637857	1637951	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g036615.1.1	CUFF.21515.2	10906522	10907248	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g036615.1.1	CUFF.21515.3	10907297	10907618	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24459.1	mRNA:Solyc09g042577.1.1	24500611	24500709	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21504.1	mRNA:Solyc08g016770.3.1	9297658	9297733	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g048545.1.1	CUFF.21542.1	12246564	12246673	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21524.1	mRNA:Solyc08g036510.1.1	11161486	11161577	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21523.1	mRNA:Solyc08g036520.2.1	11158520	11158582	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g026720.2.1	mRNA:Solyc07g026730.1.1	30493838	30493994	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g026640.2.1	CUFF.19377.2	30031935	30032059	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g027020.3.1	mRNA:Solyc07g027025.1.1	33210512	33210708	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24451.1	mRNA:Solyc09g042573.1.1	24477879	24477933	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28604.1	mRNA:Solyc11g005180.1.1	159391	159731	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28601.1	mRNA:Solyc11g005150.2.1	139958	140786	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19474.1	mRNA:Solyc07g032180.3.1	36054387	36054529	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19479.1	mRNA:Solyc07g032220.3.1	36221388	36221465	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24484.1	mRNA:Solyc09g042690.2.1	25099520	25099624	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g016550.3.1	CUFF.21474.2	7820713	7820812	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g086430.2.1	CUFF.28558.2	65379164	65379215	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g016588.1.1	CUFF.21479.2	8002183	8003951	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g086360.2.1	CUFF.28554.2	65339559	65339674	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28564.1	mRNA:Solyc10g086535.1.1	65447589	65447685	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g086640.2.1	CUFF.28572.2	65539244	65539314	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g005015.1.1	CUFF.28583.3	27701	27767	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28583.3	CUFF.28583.4	27480	27581	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g086710.2.1	CUFF.28576.2	65592724	65592788	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g086690.2.1	CUFF.28574.2	65584505	65584603	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28574.2	CUFF.28574.3	65584649	65584781	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g016210.3.1	mRNA:Solyc08g016215.1.1	7097591	7097674	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28605.1	mRNA:Solyc11g005190.2.1	162769	163115	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24327.2	mRNA:Solyc09g018850.3.1	17647082	17647156	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g032380.3.1	CUFF.19495.2	38301754	38301830	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24326.2	CUFF.24326.3	17581531	17581695	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24326.2	mRNA:Solyc09g018840.3.1	17579413	17579479	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19496.1	CUFF.19496.2	38320224	38320361	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19535.1	mRNA:Solyc07g032700.1.1	40946876	40947320	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19536.2	CUFF.19536.1	40951221	40951240	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19536.2	mRNA:Solyc07g032710.3.1	40952143	40952185	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24346.2	mRNA:Solyc09g020010.2.1	18320166	18320424	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24346.1	mRNA:Solyc09g020010.2.1	18320874	18321170	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24346.2	CUFF.24346.1	18317325	18319573	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24346.1	mRNA:Solyc09g020010.2.1	18319601	18319675	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24333.2	mRNA:Solyc09g018955.1.1	17762262	17762542	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24333.2	mRNA:Solyc09g018955.1.1	17754117	17754399	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g018920.2.1	mRNA:Solyc09g018905.1.1	17741422	17741488	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g005390.2.1	CUFF.28617.2	308855	309144	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28658.2	mRNA:Solyc11g005920.2.1	747419	747503	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28660.1	mRNA:Solyc11g005937.1.1	754126	754221	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28660.1	mRNA:Solyc11g005940.2.1	759921	760484	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g034140.2.1	CUFF.16542.2	23800031	23800117	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g034160.3.1	CUFF.16545.2	23824295	23824371	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16523.1	mRNA:Solyc06g033980.2.1	23565130	23565318	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g034063.1.1	mRNA:Solyc06g034070.2.1	23662080	23662174	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16516.1	mRNA:Solyc06g033870.1.1	23418233	23418505	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20319.2	mRNA:Solyc07g053580.2.1	62132483	62132526	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20319.2	CUFF.20319.4	62132420	62132466	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20319.2	CUFF.20319.4	62132807	62132859	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g073574.1.1	CUFF.6002.4	42328481	42328532	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g073571.1.1	mRNA:Solyc02g074590.3.1	42319137	42319263	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20307.1	mRNA:Solyc07g053420.3.1	61991723	61991775	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4384.1	mRNA:Solyc01g112130.3.1	98137169	98137243	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4384.1	mRNA:Solyc01g112140.3.1	98139739	98139821	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4373.1	mRNA:Solyc01g111940.3.1	98010668	98010852	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4373.1	mRNA:Solyc01g111950.3.1	98015954	98016021	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20271.1	mRNA:Solyc07g052940.3.1	61466636	61466715	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20271.1	mRNA:Solyc07g052940.3.1	61462059	61462243	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g052720.3.1	CUFF.20247.2	61292303	61292771	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20247.2	mRNA:Solyc07g052707.1.1	61310941	61311257	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20247.2	mRNA:Solyc07g052707.1.1	61311753	61311952	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20247.2	mRNA:Solyc07g052707.1.1	61315646	61315731	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20247.2	mRNA:Solyc07g052730.3.1	61315630	61315731	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20261.1	mRNA:Solyc07g052840.1.1	61419160	61419313	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20261.1	mRNA:Solyc07g052850.1.1	61419516	61419605	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20260.1	mRNA:Solyc07g052830.3.1	61415251	61415339	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g052810.2.1	CUFF.20257.3	61383875	61384364	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g112220.3.1	CUFF.4393.2	98184844	98185019	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6020.1	mRNA:Solyc02g076810.3.1	42489925	42489998	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g112310.3.1	mRNA:Solyc01g112305.1.1	98309186	98309532	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20291.1	mRNA:Solyc07g053170.3.1	61751998	61752039	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g077225.1.1	mRNA:Solyc02g077230.3.1	42791748	42791779	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20295.1	CUFF.20295.3	61859367	61859501	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g053110.3.1	mRNA:Solyc07g053120.3.1	61693646	61693682	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g053120.3.1	CUFF.20281.4	61698013	61698129	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g053120.3.1	CUFF.20281.4	61696742	61696853	-	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g005092.1.1	CUFF.5.2	1127832	1128226	+	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g005092.1.1	CUFF.5.2	1143970	1144351	+	1^2-,0	intron retention
SL3.0ch00	CUFF.1.1	mRNA:Solyc00g005000.3.1	16794	16879	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g077100.3.1	CUFF.6044.2	42730172	42730442	+	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g005094.1.1	CUFF.7.2	1146547	1146637	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g096450.2.1	CUFF.9407.2	59975561	59976437	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9413.2	mRNA:Solyc03g096620.2.1	60267881	60267983	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g053320.3.1	CUFF.20299.2	61917745	61917834	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9398.1	mRNA:Solyc03g096380.3.1	59862158	59862392	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12432.1	mRNA:Solyc04g056492.1.1	54246442	54246517	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12425.2	mRNA:Solyc04g056370.3.1	54094145	54094242	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12429.2	mRNA:Solyc04g056450.3.1	54157184	54157267	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g077280.3.1	CUFF.6057.2	42832392	42832479	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6056.2	mRNA:Solyc02g077270.3.1	42829051	42829122	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6056.2	mRNA:Solyc02g077270.3.1	42827841	42827881	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6069.1	mRNA:Solyc02g077490.3.1	42977010	42977079	+	1^2-,0	intron retention
SL3.0ch00	CUFF.78.2	mRNA:Solyc00g009030.2.1	7802025	7802082	-	1^2-,0	intron retention
SL3.0ch00	CUFF.78.2	mRNA:Solyc00g009030.2.1	7800884	7800926	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20244.2	mRNA:Solyc07g052650.2.1	61239361	61239439	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6080.1	mRNA:Solyc02g077615.1.1	43070391	43071192	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6071.1	mRNA:Solyc02g077500.2.1	42977648	42977737	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g077560.3.1	mRNA:Solyc02g077565.1.1	43034359	43034423	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g077575.1.1	CUFF.6077.2	43039682	43039853	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g077660.3.1	CUFF.6086.2	43126201	43126272	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6093.1	mRNA:Solyc02g077750.3.1	43186883	43186967	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g051940.3.1	CUFF.20194.3	60621088	60621169	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20194.2	CUFF.20194.3	60621544	60621645	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6111.2	mRNA:Solyc02g077920.3.1	43312602	43312683	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6109.2	mRNA:Solyc02g077900.3.1	43300442	43300508	+	1^2-,0	intron retention
SL3.0ch00	CUFF.52.1	mRNA:Solyc00g006540.1.1	4379242	4379312	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6115.1	mRNA:Solyc02g077960.2.1	43356327	43356918	-	1^2-,0	intron retention
SL3.0ch00	CUFF.45.1	mRNA:Solyc00g006487.1.1	4286998	4287130	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9434.1	mRNA:Solyc03g096870.3.1	60673386	60673465	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9435.1	mRNA:Solyc03g096880.3.1	60683160	60683298	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g052100.3.1	CUFF.20197.2	60775349	60775902	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g052100.3.1	CUFF.20197.2	60778047	60778190	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20196.1	mRNA:Solyc07g052060.2.1	60735393	60735506	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9448.1	mRNA:Solyc03g097090.3.1	60874613	60874655	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9457.2	mRNA:Solyc03g097160.3.1	60916851	60916895	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20218.3	mRNA:Solyc07g052340.3.1	60973355	60973434	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20218.3	CUFF.20218.2	60974437	60974465	+	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g007600.2.1	CUFF.72.2	6691999	6692094	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g052390.3.1	CUFF.20224.2	61033799	61034021	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g097360.3.1	CUFF.9479.2	61115172	61115360	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9477.1	mRNA:Solyc03g097355.1.1	61099693	61099756	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20238.2	mRNA:Solyc07g052565.1.1	61177352	61177461	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9487.1	mRNA:Solyc03g097490.3.1	61260056	61260188	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9485.3	mRNA:Solyc03g097460.3.1	61226033	61226182	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9485.2	mRNA:Solyc03g097460.3.1	61225756	61225942	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g097550.3.1	CUFF.9490.2	61316486	61317690	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g097630.3.1	CUFF.9495.2	61404119	61404224	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g097590.3.1	CUFF.9494.2	61358852	61359897	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9494.2	mRNA:Solyc03g097600.3.1	61371975	61372047	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g094145.1.1	CUFF.9305.2	57416274	57416358	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9294.1	mRNA:Solyc03g094100.1.1	57258705	57258810	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6156.2	CUFF.6156.1	43740506	43740635	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6132.1	mRNA:Solyc02g078280.3.1	43588485	43588575	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6129.1	mRNA:Solyc02g078170.2.1	43505887	43506002	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6130.1	mRNA:Solyc02g078210.3.1	43533996	43534043	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g110330.2.1	CUFF.4246.2	96972657	96972710	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g049430.3.1	CUFF.20139.2	59826035	59826209	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20141.1	mRNA:Solyc07g049490.2.1	59892450	59893408	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g049270.3.1	CUFF.20115.3	59662003	59662107	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4261.1	mRNA:Solyc01g110500.3.1	97104448	97104528	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4259.1	mRNA:Solyc01g110480.3.1	97095040	97095126	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g049320.3.1	CUFF.20123.2	59708342	59708415	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g049325.1.1	CUFF.20124.2	59710564	59710608	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6191.1	mRNA:Solyc02g078970.3.1	44135321	44135409	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6189.1	mRNA:Solyc02g078920.3.1	44103480	44103544	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20110.1	mRNA:Solyc07g049210.3.1	59624538	59624873	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g110180.3.1	mRNA:Solyc01g110195.1.1	96863013	96863157	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g078790.3.1	CUFF.6179.2	43999387	43999496	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9276.1	mRNA:Solyc03g093930.3.1	57040545	57040636	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9287.1	mRNA:Solyc03g094070.3.1	57206662	57206773	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28920.1	mRNA:Solyc11g009050.2.1	3178510	3178580	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28911.2	mRNA:Solyc11g008920.1.1	3087454	3087577	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28911.3	mRNA:Solyc11g008930.2.1	3088804	3088914	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g008930.2.1	CUFF.28911.5	3089517	3089603	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g008930.2.1	CUFF.28911.6	3090440	3090520	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4282.1	mRNA:Solyc01g110660.3.1	97208161	97208257	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4282.1	mRNA:Solyc01g110670.3.1	97209858	97209955	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4285.1	mRNA:Solyc01g110682.1.1	97215967	97216229	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g110647.1.1	CUFF.4280.2	97206308	97206641	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4287.2	mRNA:Solyc01g110688.1.1	97226565	97226688	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g008540.2.1	CUFF.28873.2	2724289	2724452	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g008530.2.1	CUFF.28872.2	2703463	2703570	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g008530.2.1	CUFF.28872.2	2704920	2704995	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4272.1	mRNA:Solyc01g110640.2.1	97190857	97190948	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g110643.1.1	CUFF.4274.2	97198020	97198107	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g110643.1.1	CUFF.4274.2	97197631	97197712	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g049740.3.1	CUFF.20179.3	60215505	60215606	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g049740.3.1	CUFF.20179.2	60217052	60217179	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28891.1	mRNA:Solyc11g008740.2.1	2925703	2925864	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g079010.3.1	CUFF.6197.2	44192105	44192173	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g095980.3.1	CUFF.9372.2	59209849	59209918	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28839.1	mRNA:Solyc11g008210.2.1	2454471	2454604	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28839.1	mRNA:Solyc11g008215.1.1	2456787	2456907	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28856.2	mRNA:Solyc11g008380.2.1	2579712	2579798	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28855.1	mRNA:Solyc11g008360.2.1	2573938	2573966	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28854.2	mRNA:Solyc11g008330.2.1	2532245	2532347	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g079430.3.1	CUFF.6238.2	44552341	44552501	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4366.1	mRNA:Solyc01g111840.3.1	97923085	97923157	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g111890.3.1	CUFF.4370.2	97977050	97977651	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g111930.3.1	CUFF.4372.2	98000828	98000844	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g079640.3.1	CUFF.6251.2	44712313	44712436	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6247.1	mRNA:Solyc02g079550.2.1	44631500	44631590	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6248.1	mRNA:Solyc02g079580.3.1	44655797	44655965	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6210.2	mRNA:Solyc02g079150.2.1	44312958	44313040	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g079095.1.1	CUFF.6206.3	44270074	44270251	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16437.3	CUFF.16437.2	18186142	18186348	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16442.1	CUFF.16442.2	18831829	18832005	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16442.2	mRNA:Solyc06g030470.3.1	18832995	18833076	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6225.1	mRNA:Solyc02g079277.1.1	44435613	44435652	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g111530.3.1	CUFF.4343.2	97673606	97673706	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4334.1	CUFF.4334.3	97585767	97586343	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9318.1	mRNA:Solyc03g095310.3.1	57758918	57758993	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4327.1	mRNA:Solyc01g111270.3.1	97497165	97497265	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g111275.1.1	mRNA:Solyc01g111300.3.1	97501842	97501912	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g095350.2.1	mRNA:Solyc03g095313.1.1	57805007	57805081	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20054.3	CUFF.20054.2	58989722	58989852	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20055.1	mRNA:Solyc07g047640.2.1	59003012	59003232	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g079730.3.1	CUFF.6253.2	44738543	44738628	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4322.1	mRNA:Solyc01g111210.3.1	97457881	97458536	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4322.1	mRNA:Solyc01g111220.3.1	97462767	97462862	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4320.2	CUFF.4320.3	97447291	97448374	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g111190.3.1	CUFF.4320.3	97447115	97447207	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4320.2	mRNA:Solyc01g111190.3.1	97448814	97449452	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g111020.3.1	CUFF.4309.2	97352674	97352762	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g048035.1.1	CUFF.20088.2	59349334	59352248	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20087.1	mRNA:Solyc07g048030.3.1	59346954	59346999	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g008090.2.1	CUFF.28827.2	2289529	2289898	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28826.1	mRNA:Solyc11g008080.2.1	2274329	2274573	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20091.1	mRNA:Solyc07g048085.1.1	59404220	59404285	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20091.1	mRNA:Solyc07g048085.1.1	59404077	59404151	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g095810.3.1	CUFF.9357.1	58878334	58878415	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28816.2	mRNA:Solyc11g007910.2.1	2136595	2136677	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g007900.2.1	CUFF.28813.2	2129674	2129810	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g095870.2.1	CUFF.9363.2	58970964	58971065	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9363.2	CUFF.9363.3	58971187	58971392	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9371.1	mRNA:Solyc03g095950.3.1	59091414	59091777	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28812.1	mRNA:Solyc11g007840.2.1	2057025	2057107	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9323.2	CUFF.9323.3	57879028	57880949	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9323.2	mRNA:Solyc03g095377.1.1	57878266	57878582	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g111810.3.1	CUFF.4364.2	97891998	97892168	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g007690.2.1	CUFF.28804.2	1929892	1929968	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28799.1	mRNA:Solyc11g007640.1.1	1872558	1872822	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4354.1	mRNA:Solyc01g111680.3.1	97784987	97785117	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28797.1	mRNA:Solyc11g007590.2.1	1850398	1850430	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g007600.2.1	CUFF.28798.2	1855070	1855148	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g007580.2.1	CUFF.28795.2	1821099	1821141	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g007580.2.1	CUFF.28795.2	1815666	1815739	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9338.1	mRNA:Solyc03g095620.3.1	58218122	58219817	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9338.1	mRNA:Solyc03g095615.1.1	58219889	58220124	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g010200.3.1	CUFF.16230.2	5420051	5420156	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16228.1	mRNA:Solyc06g010170.3.1	5291832	5291948	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16206.1	CUFF.16206.2	4827130	4827450	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17394.2	mRNA:Solyc06g062660.3.1	39662528	39662605	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17383.2	mRNA:Solyc06g062480.3.1	39536480	39536943	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g062623.1.1	mRNA:Solyc06g062630.2.1	39648393	39648438	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17375.1	mRNA:Solyc06g062330.2.1	39431465	39431637	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g045350.3.1	CUFF.20024.2	58576848	58576879	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20026.2	CUFF.20026.3	58598304	58599384	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20026.3	CUFF.20026.4	58599417	58600093	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g062280.3.1	CUFF.17371.2	39404351	39404492	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g045380.3.1	CUFF.20029.2	58620515	58623061	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g045380.3.1	CUFF.20029.3	58623328	58623438	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5773.1	mRNA:Solyc02g069940.3.1	40283413	40283886	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5767.1	mRNA:Solyc02g069890.1.1	40256934	40256985	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16178.1	mRNA:Solyc06g009783.1.1	3786439	3786525	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20007.1	mRNA:Solyc07g045180.3.1	58417224	58417251	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g069810.2.1	CUFF.5759.4	40211509	40211596	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20005.1	mRNA:Solyc07g045145.1.1	58376253	58376349	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5758.1	mRNA:Solyc02g069780.3.1	40172642	40173015	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g069750.2.1	CUFF.5757.3	40136485	40136687	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16174.1	mRNA:Solyc06g009710.3.1	3687598	3687848	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g061150.3.1	CUFF.17362.2	39275630	39275797	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g061080.3.1	CUFF.17357.2	39226732	39226817	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g060925.1.1	mRNA:Solyc06g060930.1.1	39038367	39038430	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19976.1	mRNA:Solyc07g044790.3.1	57961057	57961226	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5724.2	mRNA:Solyc02g069390.2.1	39867915	39868848	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5712.1	mRNA:Solyc02g069340.3.1	39829288	39829391	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16298.1	mRNA:Solyc06g011374.1.1	6869247	6869349	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16298.1	CUFF.16298.3	6869570	6870245	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g043450.2.1	mRNA:Solyc07g043440.1.1	57334772	57334823	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g043600.3.1	CUFF.19970.2	57682994	57683106	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19968.2	mRNA:Solyc07g043580.3.1	57632346	57632594	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16323.1	CUFF.16323.2	8021339	8021668	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16323.2	mRNA:Solyc06g011550.3.1	8024111	8024254	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g042850.2.1	CUFF.19906.4	56516738	56517080	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19906.3	CUFF.19906.4	56516738	56517134	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5824.1	mRNA:Solyc02g070480.3.1	40789565	40790102	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g042930.3.1	CUFF.19917.2	56611206	56611540	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19917.1	CUFF.19917.2	56611664	56611851	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g070420.2.1	CUFF.5818.2	40711462	40711532	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17318.1	mRNA:Solyc06g060690.2.1	38828589	38828683	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17322.1	mRNA:Solyc06g060730.3.1	38863462	38863557	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19932.1	mRNA:Solyc07g043000.3.1	56666487	56666728	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5836.1	mRNA:Solyc02g070705.1.1	40932379	40932594	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5836.1	mRNA:Solyc02g070705.1.1	40931849	40931864	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5836.2	mRNA:Solyc02g070705.1.1	40932636	40932818	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17337.1	mRNA:Solyc06g060810.3.1	38959107	38959198	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19946.2	mRNA:Solyc07g043190.2.1	56921714	56921958	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17299.1	mRNA:Solyc06g060560.3.1	38682652	38682829	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17297.2	mRNA:Solyc06g060535.1.1	38670869	38670981	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17280.1	mRNA:Solyc06g060270.3.1	38363241	38363347	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g070330.3.1	mRNA:Solyc02g070340.3.1	40676284	40678631	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g060830.3.1	CUFF.22087.2	45672247	45672306	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g065470.3.1	CUFF.17510.2	40971318	40971390	-	1^2-,0	intron retention
SL3.0ch00	CUFF.133.1	mRNA:Solyc00g014790.2.1	10111208	10112877	+	1^2-,0	intron retention
SL3.0ch00	CUFF.142.1	mRNA:Solyc00g014860.1.1	10128116	10128190	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16083.1	mRNA:Solyc06g008710.2.1	2618963	2619030	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16084.1	mRNA:Solyc06g008720.3.1	2636706	2636756	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16091.1	mRNA:Solyc06g008740.3.1	2664833	2664897	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g065360.3.1	CUFF.17506.3	40894889	40894979	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16033.3	CUFF.16033.2	1954618	1954721	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17492.2	mRNA:Solyc06g065170.3.1	40755033	40755176	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g007980.3.1	CUFF.16023.2	1843569	1843601	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17502.1	mRNA:Solyc06g065320.3.1	40854191	40854674	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17500.1	mRNA:Solyc06g065305.1.1	40842159	40842218	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16052.1	mRNA:Solyc06g008315.1.1	2185374	2185516	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g008300.3.1	CUFF.16051.3	2162580	2162669	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16048.1	mRNA:Solyc06g008265.1.1	2137905	2138338	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5910.1	mRNA:Solyc02g071580.3.1	41545231	41545307	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g071530.2.1	CUFF.5908.2	41498453	41498540	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5897.1	mRNA:Solyc02g071320.3.1	41363906	41364012	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g071365.1.1	mRNA:Solyc02g071400.3.1	41439835	41439890	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g071365.1.1	mRNA:Solyc02g071440.3.1	41455564	41455658	-	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g012702.1.1	CUFF.116.2	9628888	9628934	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g071340.2.1	CUFF.5898.2	41391959	41392039	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g071340.2.1	CUFF.5898.2	41392948	41393036	+	1^2-,0	intron retention
SL3.0ch00	CUFF.123.1	mRNA:Solyc00g013155.1.1	9739212	9739249	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17471.1	CUFF.17471.2	40376824	40377199	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g071265.1.1	CUFF.5892.2	41320127	41320158	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5881.1	mRNA:Solyc02g071165.1.1	41224260	41224499	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5877.1	mRNA:Solyc02g071080.2.1	41142246	41142561	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5876.1	mRNA:Solyc02g071060.3.1	41118451	41118541	-	1^2-,0	intron retention
SL3.0ch00	CUFF.103.2	mRNA:Solyc00g010760.1.1	8955057	8955223	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17485.2	mRNA:Solyc06g064970.3.1	40634723	40634803	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22114.2	mRNA:Solyc08g061000.3.1	46410229	46410750	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g070860.3.1	CUFF.5854.1	41022379	41022697	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g060970.3.1	CUFF.22103.2	46216532	46216566	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5851.1	mRNA:Solyc02g070850.1.1	41003653	41004044	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17477.1	mRNA:Solyc06g064860.2.1	40551209	40551288	+	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g012708.1.1	CUFF.118.2	9705641	9705731	-	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g012704.1.1	CUFF.117.2	9693192	9693272	-	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g012704.1.1	CUFF.117.2	9689663	9689699	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17483.1	mRNA:Solyc06g064895.1.1	40571678	40571759	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g064895.1.1	mRNA:Solyc06g064900.3.1	40571907	40571989	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17484.1	mRNA:Solyc06g064910.3.1	40587601	40587716	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22090.1	mRNA:Solyc08g060845.1.1	45679201	45679303	-	1^2-,0	intron retention
SL3.0ch12	CUFF.30896.1	mRNA:Solyc12g005340.2.1	211642	211772	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g071760.3.1	CUFF.5938.2	41692731	41692828	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g009020.2.1	mRNA:Solyc06g009040.3.1	2965788	2965826	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g009055.1.1	CUFF.16113.2	2981984	2982230	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16118.1	mRNA:Solyc06g009090.1.1	3022961	3023043	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g009125.1.1	CUFF.16125.2	3077524	3077599	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16125.2	mRNA:Solyc06g009130.3.1	3084674	3084774	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16136.1	mRNA:Solyc06g009240.3.1	3203397	3203491	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g009225.1.1	CUFF.16135.2	3196471	3196615	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g009490.3.1	CUFF.16155.2	3450350	3451015	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g009533.1.1	mRNA:Solyc06g009550.3.1	3536416	3536543	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16170.1	mRNA:Solyc06g009690.2.1	3633600	3633688	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17441.1	mRNA:Solyc06g063170.3.1	40015719	40016001	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17441.1	mRNA:Solyc06g063170.3.1	40018050	40018142	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17442.1	mRNA:Solyc06g063180.2.1	40025233	40025310	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g063200.2.1	CUFF.17444.2	40040474	40040557	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16100.2	CUFF.16100.1	2754523	2754569	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16100.2	CUFF.16100.3	2753621	2754393	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16099.1	mRNA:Solyc06g008803.1.1	2750118	2750186	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g063130.3.1	mRNA:Solyc06g063140.3.1	39997308	39997511	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g063260.3.1	CUFF.17448.4	40076757	40077493	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g063305.1.1	mRNA:Solyc06g063310.2.1	40126708	40126725	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17449.1	CUFF.17449.2	40086248	40086733	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g063345.1.1	CUFF.17453.2	40152412	40152520	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17460.1	mRNA:Solyc06g064470.3.1	40263584	40263663	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g064480.3.1	CUFF.17462.2	40272453	40272819	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g064445.1.1	CUFF.17457.2	40242191	40243249	+	1^2-,0	intron retention
SL3.0ch12	CUFF.30953.1	mRNA:Solyc12g006120.2.1	682599	682738	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g072230.3.1	CUFF.5977.2	42115136	42115211	+	1^2-,0	intron retention
SL3.0ch12	CUFF.30941.1	mRNA:Solyc12g006010.2.1	622640	622723	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g006040.2.1	mRNA:Solyc12g006030.2.1	628163	628302	-	1^2-,0	intron retention
SL3.0ch12	CUFF.30937.1	mRNA:Solyc12g005960.2.1	589488	591445	-	1^2-,0	intron retention
SL3.0ch12	CUFF.30931.1	mRNA:Solyc12g005920.2.1	550479	550557	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g072393.1.1	CUFF.5985.2	42181402	42181498	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5986.1	CUFF.5986.2	42191849	42192067	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5986.1	mRNA:Solyc02g072397.1.1	42192167	42192238	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5987.2	CUFF.5987.1	42204976	42205220	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5987.2	CUFF.5987.4	42206538	42207392	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g005875.1.1	CUFF.30921.3	511538	511796	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g005900.2.1	CUFF.30925.2	531493	531565	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5978.1	mRNA:Solyc02g072305.1.1	42160872	42160989	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5984.1	mRNA:Solyc02g072370.1.1	42176696	42176747	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17405.1	mRNA:Solyc06g062790.3.1	39729295	39729351	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17405.1	mRNA:Solyc06g062790.3.1	39732608	39732691	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g071870.3.1	CUFF.5961.2	41791795	41792462	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5959.1	mRNA:Solyc02g071860.3.1	41776835	41777132	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22185.1	CUFF.22185.3	48772608	48772648	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g061450.2.1	CUFF.22185.3	48772843	48772945	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17411.1	mRNA:Solyc06g062870.3.1	39787827	39787920	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5965.3	mRNA:Solyc02g071910.1.1	41845006	41845384	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17412.2	mRNA:Solyc06g062883.1.1	39813148	39813457	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17412.1	mRNA:Solyc06g062883.1.1	39812147	39813069	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5950.1	mRNA:Solyc02g071830.2.1	41768305	41768393	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5950.1	CUFF.5950.3	41770750	41770833	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5950.1	CUFF.5950.3	41767154	41767607	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5950.3	CUFF.5950.4	41770366	41770686	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5947.1	mRNA:Solyc02g071820.3.1	41737563	41737657	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5970.1	mRNA:Solyc02g072070.3.1	41914180	41914298	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g005470.2.1	CUFF.30903.2	285414	285863	+	1^2-,0	intron retention
SL3.0ch00	CUFF.146.1	mRNA:Solyc00g019970.2.1	10847007	10847089	+	1^2-,0	intron retention
SL3.0ch00	CUFF.146.1	mRNA:Solyc00g019980.2.1	10849754	10850002	+	1^2-,0	intron retention
SL3.0ch12	CUFF.30907.1	mRNA:Solyc12g005590.2.1	315777	315875	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17425.1	mRNA:Solyc06g062990.2.1	39872947	39873032	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g062970.2.1	CUFF.17423.2	39865686	39865778	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17424.1	mRNA:Solyc06g062980.3.1	39868810	39868888	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g063010.3.1	CUFF.17427.2	39892626	39892711	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g072900.1.1	CUFF.30841.2	56364742	56364823	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g067900.2.1	CUFF.17626.2	42204754	42204824	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17622.1	mRNA:Solyc06g066830.3.1	42151208	42151378	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g066830.3.1	mRNA:Solyc06g066850.1.1	42157182	42157205	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30842.1	mRNA:Solyc11g072940.2.1	56395330	56395427	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g066790.3.1	CUFF.17619.2	42097614	42097792	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30835.1	mRNA:Solyc11g072810.2.1	56301867	56301928	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30835.1	mRNA:Solyc11g072810.2.1	56304344	56304442	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g067970.2.1	CUFF.17629.3	42244491	42244514	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17601.1	mRNA:Solyc06g066610.3.1	41970953	41971036	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g005630.2.1	CUFF.15910.2	694095	694191	-	1^2-,0	intron retention
SL3.0ch06	CUFF.15916.1	mRNA:Solyc06g005650.2.1	715073	715328	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g005590.3.1	CUFF.15904.2	635793	635889	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g073110.2.1	CUFF.30855.3	56499229	56499313	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30855.2	CUFF.30855.3	56499382	56499460	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30854.2	mRNA:Solyc11g073080.2.1	56480642	56481563	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30854.1	mRNA:Solyc11g073080.2.1	56481664	56481825	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30854.2	mRNA:Solyc11g073080.2.1	56483791	56483878	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g073120.2.1	CUFF.30856.2	56508375	56508573	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g073130.2.1	CUFF.30858.2	56512424	56512769	+	1^2-,0	intron retention
SL3.0ch06	CUFF.15881.1	mRNA:Solyc06g005330.3.1	352500	352633	-	1^2-,0	intron retention
SL3.0ch06	CUFF.15887.2	mRNA:Solyc06g005410.3.1	422875	423640	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g005090.2.1	mRNA:Solyc12g005093.1.1	70780	70806	-	1^2-,0	intron retention
SL3.0ch06	CUFF.15894.1	mRNA:Solyc06g005475.1.1	485986	486061	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g005100.3.1	CUFF.15857.2	120020	120141	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g005100.3.1	CUFF.15857.2	122213	122900	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g005190.3.1	CUFF.15858.2	209158	209323	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g005190.3.1	CUFF.15858.3	210175	210340	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g050740.3.1	mRNA:Solyc05g050735.1.1	61731550	61731631	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g050805.1.1	CUFF.15390.3	61847086	61847266	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g050960.3.1	CUFF.15404.2	62027118	62027201	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15401.1	mRNA:Solyc05g050935.1.1	62015872	62015895	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15397.2	mRNA:Solyc05g050910.3.1	61981814	61982043	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15398.1	mRNA:Solyc05g050920.3.1	61986227	61986471	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g005670.3.1	CUFF.15917.2	743443	743556	+	1^2-,0	intron retention
SL3.0ch06	CUFF.15922.2	mRNA:Solyc06g005740.2.1	776612	777376	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g050700.1.1	CUFF.15371.2	61686969	61687349	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g068410.3.1	CUFF.17658.2	42496297	42496382	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15411.1	mRNA:Solyc05g051070.3.1	62125611	62125704	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g051145.1.1	mRNA:Solyc05g051150.1.1	62207879	62207921	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30770.1	mRNA:Solyc11g072080.1.1	55654609	55654713	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17549.1	mRNA:Solyc06g065900.3.1	41416564	41416668	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17526.1	mRNA:Solyc06g065620.2.1	41109786	41110117	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17526.1	mRNA:Solyc06g065620.2.1	41117043	41117173	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30786.1	mRNA:Solyc11g072280.2.1	55770133	55770262	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17530.1	mRNA:Solyc06g065630.3.1	41131297	41131379	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17524.1	mRNA:Solyc06g065560.2.1	41066637	41067602	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g065570.3.1	CUFF.17525.2	41082867	41082974	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30810.1	mRNA:Solyc11g072530.2.1	56021328	56021421	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30815.2	mRNA:Solyc11g072610.2.1	56122468	56122524	-	1^2-,0	intron retention
SL3.0ch06	CUFF.15967.1	mRNA:Solyc06g007165.1.1	1218539	1218640	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30824.2	mRNA:Solyc11g072630.2.1	56161989	56162293	+	1^2-,0	intron retention
SL3.0ch06	CUFF.15981.2	CUFF.15981.1	1314237	1314679	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g072680.1.1	CUFF.30829.2	56186603	56186718	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30828.1	mRNA:Solyc11g072670.1.1	56183929	56184022	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g006057.1.1	mRNA:Solyc06g006060.1.1	1076364	1076884	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g006057.1.1	mRNA:Solyc06g006070.1.1	1082203	1082250	+	1^2-,0	intron retention
SL3.0ch06	CUFF.15960.1	mRNA:Solyc06g007115.1.1	1164455	1164530	+	1^2-,0	intron retention
SL3.0ch06	CUFF.15936.2	mRNA:Solyc06g005860.2.1	876119	877165	-	1^2-,0	intron retention
SL3.0ch06	CUFF.15937.1	mRNA:Solyc06g005870.1.1	883140	883385	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g005930.2.1	CUFF.15939.2	917575	917645	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g007850.3.1	CUFF.16019.2	1747504	1748320	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16010.1	mRNA:Solyc06g007670.3.1	1674543	1674620	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16006.1	mRNA:Solyc06g007590.3.1	1583464	1583537	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16007.1	mRNA:Solyc06g007600.3.1	1598955	1599049	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15455.2	mRNA:Solyc05g051560.3.1	62783099	62783234	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15453.2	mRNA:Solyc05g051530.3.1	62742228	62742297	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17586.1	mRNA:Solyc06g066460.3.1	41839531	41839630	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17586.1	mRNA:Solyc06g066470.3.1	41841033	41841132	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17586.1	mRNA:Solyc06g066473.1.1	41842412	41842492	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17586.2	mRNA:Solyc06g066460.3.1	41839707	41839832	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g066280.3.1	CUFF.17574.2	41700110	41700178	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g051994.1.1	CUFF.15493.2	63193548	63193953	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15493.2	mRNA:Solyc05g052010.2.1	63193200	63193391	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g051990.3.1	CUFF.15491.2	63185722	63185801	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15491.2	mRNA:Solyc05g051992.1.1	63185346	63185421	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30713.1	mRNA:Solyc11g071400.1.1	55180642	55180836	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g071420.2.1	CUFF.30723.3	55196586	55196633	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g071420.2.1	CUFF.30723.5	55200494	55200537	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g069400.3.1	CUFF.17740.2	43280004	43280101	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17756.1	mRNA:Solyc06g069565.1.1	43439558	43439839	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17756.1	mRNA:Solyc06g069565.1.1	43436797	43437422	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17753.2	mRNA:Solyc06g069560.2.1	43428824	43428939	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9809.1	mRNA:Solyc03g113080.3.1	64857110	64857196	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9814.1	mRNA:Solyc03g113180.3.1	64905545	64905723	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9816.1	mRNA:Solyc03g113230.2.1	64925022	64925087	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g071995.1.1	mRNA:Solyc11g072000.2.1	55591224	55594786	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30758.1	mRNA:Solyc11g071920.2.1	55535016	55535091	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30758.1	mRNA:Solyc11g071920.2.1	55539339	55539420	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g071860.2.1	mRNA:Solyc11g071865.1.1	55503325	55503715	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30742.1	mRNA:Solyc11g071580.2.1	55307699	55307761	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30745.1	mRNA:Solyc11g071650.2.1	55362460	55362551	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g071427.1.1	CUFF.30727.2	55208431	55208797	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30735.1	CUFF.30735.2	55276885	55277283	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g113360.3.1	CUFF.9821.2	64993897	64993946	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17767.2	mRNA:Solyc06g069670.3.1	43516947	43517025	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17767.2	mRNA:Solyc06g069665.1.1	43521323	43521345	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g113840.2.1	CUFF.9866.2	65369019	65369114	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g113820.2.1	CUFF.9864.2	65344026	65344109	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9863.1	mRNA:Solyc03g113800.3.1	65332018	65332103	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g113790.3.1	CUFF.9861.2	65322533	65322580	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g113770.3.1	CUFF.9859.2	65307793	65307897	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g113710.3.1	CUFF.9855.2	65263377	65263486	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g113960.3.1	CUFF.9879.2	65498192	65498257	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17787.1	mRNA:Solyc06g071050.3.1	43795152	43795243	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17792.1	mRNA:Solyc06g071190.3.1	43914321	43914409	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9828.1	mRNA:Solyc03g113440.3.1	65073101	65073173	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17796.2	CUFF.17796.1	43970285	43970470	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17796.2	CUFF.17796.1	43970839	43970992	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17805.1	mRNA:Solyc06g071350.3.1	44053536	44053557	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g113640.3.1	CUFF.9839.2	65208050	65208138	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g068610.2.1	CUFF.17674.2	42642983	42643428	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17671.1	mRNA:Solyc06g068570.3.1	42621893	42622157	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9885.1	CUFF.9885.2	65537902	65538507	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9885.2	mRNA:Solyc03g114010.2.1	65538603	65538738	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9889.2	mRNA:Solyc03g114040.3.1	65568863	65568956	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9889.2	mRNA:Solyc03g114040.3.1	65567726	65567806	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30673.2	mRNA:Solyc11g069925.1.1	54824237	54824266	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30675.2	CUFF.30675.1	54881874	54881899	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30675.2	CUFF.30675.1	54881245	54881346	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g070055.1.1	CUFF.30680.2	54904229	54904438	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g070150.2.1	CUFF.30690.2	54965288	54965527	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30693.1	mRNA:Solyc11g070190.2.1	54999499	54999575	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30634.1	mRNA:Solyc11g069610.2.1	54544054	54544172	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30638.2	mRNA:Solyc11g069630.1.1	54562772	54562832	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g069620.2.1	CUFF.30636.2	54560007	54560067	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g069840.2.1	CUFF.30668.2	54764562	54764608	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30666.1	mRNA:Solyc11g069820.2.1	54754160	54754258	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30619.1	mRNA:Solyc11g069370.2.1	54270361	54270382	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17699.2	mRNA:Solyc06g068985.1.1	42916327	42916536	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g069380.3.1	CUFF.17736.2	43246812	43246894	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17718.1	mRNA:Solyc06g069130.3.1	43030536	43030623	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17725.1	mRNA:Solyc06g069190.3.1	43076959	43077037	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g108790.2.1	CUFF.4127.2	95892302	95892669	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4129.1	mRNA:Solyc01g108830.2.1	95909467	95909517	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g108720.2.1	CUFF.4120.2	95849132	95849261	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4120.2	mRNA:Solyc01g108730.2.1	95849565	95849642	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4114.1	mRNA:Solyc01g108670.3.1	95795061	95795112	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g108680.3.1	CUFF.4115.3	95822172	95822277	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4152.1	mRNA:Solyc01g109080.3.1	96052505	96052768	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1194.3	mRNA:Solyc01g017450.1.1	23870550	23870596	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g069220.2.1	CUFF.30608.2	54150380	54150511	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4139.1	mRNA:Solyc01g108950.2.1	95988545	95988633	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g108920.3.1	CUFF.4133.3	95964061	95964083	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g108920.3.1	CUFF.4133.3	95965646	95965740	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4133.3	mRNA:Solyc01g108940.2.1	95977902	95977998	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4133.3	mRNA:Solyc01g108930.3.1	95977902	95977995	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4143.1	mRNA:Solyc01g108973.1.1	95996645	95996835	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4148.1	CUFF.4148.2	96015808	96015878	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g069060.1.1	CUFF.30600.2	53947645	53947731	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9652.1	mRNA:Solyc03g111260.3.1	63365250	63365342	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g111420.2.1	mRNA:Solyc03g111430.2.1	63507536	63507607	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g111385.1.1	mRNA:Solyc03g111390.3.1	63466072	63467481	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9672.1	mRNA:Solyc03g111450.2.1	63525567	63525691	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g111570.3.1	CUFF.9679.2	63671222	63671323	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9702.1	mRNA:Solyc03g111600.3.1	63729654	63729732	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g111730.3.1	mRNA:Solyc03g111725.1.1	63862901	63862929	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g112050.3.1	CUFF.9733.2	64071326	64072003	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9726.1	mRNA:Solyc03g111973.1.1	64027453	64027558	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9726.1	mRNA:Solyc03g111975.1.1	64028057	64028094	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9726.1	mRNA:Solyc03g111977.1.1	64030599	64030987	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9725.2	mRNA:Solyc03g111935.1.1	63995747	63995866	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9731.1	mRNA:Solyc03g111995.1.1	64045165	64045212	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g068745.1.1	CUFF.30575.2	53673866	53674892	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g109655.1.1	mRNA:Solyc01g109670.3.1	96485076	96485145	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4207.1	mRNA:Solyc01g109760.2.1	96535273	96535910	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30547.2	CUFF.30547.1	53342208	53342274	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30547.1	mRNA:Solyc11g067310.2.1	53345755	53345835	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30538.1	mRNA:Solyc11g067240.2.1	53276867	53276918	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g110030.3.1	mRNA:Solyc01g110035.1.1	96765005	96765298	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4227.1	mRNA:Solyc01g110090.1.1	96794197	96794267	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9755.1	mRNA:Solyc03g112350.3.1	64258977	64259122	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g112330.3.1	mRNA:Solyc03g112335.1.1	64244171	64244485	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9756.2	mRNA:Solyc03g112357.1.1	64266225	64266328	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9747.1	mRNA:Solyc03g112280.3.1	64212597	64212671	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4169.1	mRNA:Solyc01g109320.3.1	96213520	96213623	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g109410.3.1	mRNA:Solyc01g109420.3.1	96295352	96295567	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4178.1	mRNA:Solyc01g109450.3.1	96309967	96310294	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g109540.3.1	CUFF.4183.2	96369963	96370039	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g112420.2.1	CUFF.9763.3	64309488	64309621	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g112600.4.1	CUFF.9781.2	64478538	64478675	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g112560.3.1	CUFF.9771.2	64433219	64433298	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17854.2	mRNA:Solyc06g072135.1.1	44597451	44597549	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g112860.3.1	CUFF.9797.2	64646220	64646368	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17846.2	CUFF.17846.1	44529980	44530236	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17846.2	mRNA:Solyc06g072014.1.1	44528789	44528918	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17846.2	mRNA:Solyc06g072016.1.1	44529894	44529935	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17832.2	mRNA:Solyc06g071850.3.1	44406518	44406594	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17832.2	mRNA:Solyc06g071850.3.1	44411838	44411920	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g071870.3.1	CUFF.17836.2	44422362	44422432	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g071870.3.1	CUFF.17836.2	44420818	44420914	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9790.2	mRNA:Solyc03g112750.3.1	64574042	64574088	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g071840.2.1	CUFF.17831.2	44399597	44399687	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g071730.3.1	mRNA:Solyc06g071725.1.1	44329196	44329991	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17821.2	CUFF.17821.1	44255036	44255151	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17812.1	mRNA:Solyc06g071500.3.1	44163025	44163066	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g066830.2.1	CUFF.30497.2	52940558	52941821	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30491.2	mRNA:Solyc11g066790.2.1	52886661	52886775	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30507.1	mRNA:Solyc11g066990.2.1	53054911	53054951	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30514.1	mRNA:Solyc11g067075.1.1	53110791	53111326	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4007.1	mRNA:Solyc01g107270.3.1	94769126	94769200	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4007.2	mRNA:Solyc01g107270.3.1	94766890	94766973	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4007.2	mRNA:Solyc01g107273.1.1	94771013	94771021	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30470.1	mRNA:Solyc11g066540.2.1	52608788	52608873	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4004.1	mRNA:Solyc01g107210.3.1	94746229	94746248	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4004.1	mRNA:Solyc01g107215.1.1	94747426	94747863	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9558.1	mRNA:Solyc03g098290.3.1	62072177	62072261	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g098350.1.1	CUFF.9565.2	62122619	62122955	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3973.2	mRNA:Solyc01g106943.1.1	94543661	94544219	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3988.1	mRNA:Solyc01g107040.3.1	94602238	94602487	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9543.1	mRNA:Solyc03g098150.3.1	61914901	61914971	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9541.1	mRNA:Solyc03g098110.3.1	61886646	61886687	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g097760.2.1	CUFF.9514.2	61541526	61541595	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9515.1	mRNA:Solyc03g097770.2.1	61543091	61543222	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9575.1	mRNA:Solyc03g098430.3.1	62170591	62170686	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g107680.3.1	mRNA:Solyc01g107695.1.1	95047318	95047540	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4034.1	CUFF.4034.3	95041938	95042029	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4034.1	CUFF.4034.3	95042490	95042794	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4034.3	mRNA:Solyc01g107690.3.1	95042258	95042347	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g107580.3.1	CUFF.4026.2	94976878	94977163	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4029.1	mRNA:Solyc01g107610.3.1	95003208	95003336	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30416.2	mRNA:Solyc11g065700.2.1	51527423	51527487	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30422.1	mRNA:Solyc11g065750.2.1	51639433	51639542	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g107420.2.1	mRNA:Solyc01g107415.1.1	94887135	94887219	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g108000.3.1	CUFF.4059.2	95283159	95283249	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4068.1	mRNA:Solyc01g108043.1.1	95315474	95315814	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4068.1	mRNA:Solyc01g108047.1.1	95316652	95317075	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4068.1	mRNA:Solyc01g108047.1.1	95319168	95319914	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4068.1	mRNA:Solyc01g108050.3.1	95325747	95325884	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g065643.1.1	CUFF.30410.3	51469274	51469365	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4077.2	mRNA:Solyc01g108130.3.1	95390815	95390891	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4087.2	mRNA:Solyc01g108160.3.1	95435561	95435744	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g108210.3.1	CUFF.4090.2	95466073	95466170	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4041.1	mRNA:Solyc01g107853.1.1	95143499	95143560	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g107930.3.1	mRNA:Solyc01g107933.1.1	95204934	95205046	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9611.1	mRNA:Solyc03g019850.3.1	62794264	62794820	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g019840.3.1	CUFF.9612.2	62803156	62803255	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9582.1	mRNA:Solyc03g098590.3.1	62332023	62332109	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g098580.1.1	CUFF.9581.2	62325958	62326360	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9635.1	mRNA:Solyc03g110905.1.1	63129263	63129353	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g111000.3.1	mRNA:Solyc03g111010.3.1	63185757	63185808	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g110900.3.1	CUFF.9629.2	63119484	63119689	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g110900.3.1	CUFF.9629.2	63106102	63106143	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30360.1	mRNA:Solyc11g065120.2.1	50753938	50753980	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30369.1	mRNA:Solyc11g065193.1.1	50843231	50843328	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30369.1	CUFF.30369.4	50843789	50844020	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30363.2	mRNA:Solyc11g065135.1.1	50771001	50771670	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g065125.1.1	CUFF.30362.2	50767346	50767504	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30374.1	mRNA:Solyc11g065210.3.1	50853681	50853774	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g065370.2.1	CUFF.30385.2	51109204	51109571	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30346.1	mRNA:Solyc11g064957.1.1	50572989	50574049	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g064957.1.1	CUFF.30346.4	50575306	50576159	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g065020.2.1	CUFF.30353.2	50635016	50636169	+	1^2-,0	intron retention
SL3.0ch01	CUFF.4102.1	mRNA:Solyc01g108480.1.1	95689199	95689297	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30356.2	mRNA:Solyc11g065040.2.1	50643984	50644060	-	1^2-,0	intron retention
SL3.0ch01	CUFF.4095.2	mRNA:Solyc01g108410.2.1	95640342	95640535	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g050905.1.1	CUFF.27628.2	51092825	51092857	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31814.1	mRNA:Solyc12g070080.2.1	29202504	29202705	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g050735.1.1	CUFF.27608.1	50372983	50373056	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g050753.1.1	CUFF.27614.2	50375288	50375315	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31780.1	mRNA:Solyc12g027750.2.1	25992516	25992654	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31817.1	CUFF.31817.2	29623731	29624346	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27600.2	mRNA:Solyc10g050570.1.1	50013963	50014346	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27604.1	CUFF.27604.2	50266120	50266388	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27582.1	mRNA:Solyc10g050470.2.1	49708937	49709043	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g015320.3.1	CUFF.14151.2	10357013	10357823	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14154.2	mRNA:Solyc05g015370.2.1	10445523	10445713	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14147.1	mRNA:Solyc05g015210.3.1	10073040	10073337	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14119.1	mRNA:Solyc05g014760.3.1	8919427	8919502	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14112.2	mRNA:Solyc05g014652.1.1	8653476	8653528	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g014690.2.1	CUFF.14115.2	8825461	8825871	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g050060.2.1	CUFF.27524.2	47600227	47600318	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27529.1	CUFF.27529.2	47714202	47714241	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27529.2	mRNA:Solyc10g050095.1.1	47714049	47714107	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31819.1	mRNA:Solyc12g070152.1.1	29714186	29714422	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g070280.2.1	CUFF.31846.2	30096071	30096148	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g070280.2.1	CUFF.31846.2	30096901	30096992	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31866.1	mRNA:Solyc12g062280.2.1	31777283	31777369	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g050050.1.1	CUFF.27522.2	47565602	47565733	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27484.1	mRNA:Solyc10g049780.1.1	46743227	46743290	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27486.1	CUFF.27486.4	46802298	46802392	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27441.1	mRNA:Solyc10g049450.2.1	45811688	45811763	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31944.1	mRNA:Solyc12g062920.2.1	35970286	35970506	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31929.1	mRNA:Solyc12g062800.1.1	34898305	34898534	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31915.1	mRNA:Solyc12g062540.2.1	33926913	33926983	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27405.2	mRNA:Solyc10g048100.2.1	44055540	44055622	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27380.1	mRNA:Solyc10g047900.2.1	42872121	42872189	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g035250.2.1	CUFF.32032.2	39595054	39595273	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g035250.2.1	CUFF.32032.2	39591404	39591529	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g033090.2.1	CUFF.32003.2	37834078	37834126	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g033070.1.1	CUFF.32002.2	37831985	37832036	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32014.1	mRNA:Solyc12g035170.2.1	38786006	38786101	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g049210.2.1	CUFF.27410.2	44534504	44534586	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27421.1	mRNA:Solyc10g049215.1.1	44570638	44570827	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g049270.2.1	CUFF.27429.2	44766916	44766977	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g049270.2.1	CUFF.27429.2	44768282	44768349	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8433.1	mRNA:Solyc03g071730.1.1	20619709	20619787	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19125.2	CUFF.19125.1	14337877	14338167	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19125.2	mRNA:Solyc07g020870.2.1	14335224	14335267	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19125.1	CUFF.19125.4	14338210	14338281	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g051790.3.1	CUFF.8459.2	22846325	22846372	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g018185.1.1	CUFF.14359.2	20203849	20204123	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14384.1	mRNA:Solyc05g018395.1.1	20713398	20713724	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g018340.3.1	CUFF.14380.2	20582377	20583714	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g018320.3.1	mRNA:Solyc05g018325.1.1	20452499	20452573	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14424.2	CUFF.14424.1	22413857	22413961	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14424.2	CUFF.14424.1	22413582	22413660	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14424.1	mRNA:Solyc05g018600.3.1	22413582	22413659	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14436.2	mRNA:Solyc05g018710.2.1	22853221	22853279	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8371.1	CUFF.8371.2	12831786	12831854	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8371.1	mRNA:Solyc03g046450.3.1	12828094	12828206	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8371.1	mRNA:Solyc03g046450.3.1	12821270	12821350	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14310.2	mRNA:Solyc05g017840.3.1	18475130	18476270	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g017785.1.1	CUFF.14308.2	18363648	18364189	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14308.3	CUFF.14308.2	18364285	18364734	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g046596.1.1	CUFF.8386.2	18083049	18083085	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g071640.2.1	CUFF.8426.3	20417826	20417943	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g071640.2.1	CUFF.8426.4	20418026	20418288	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8364.1	mRNA:Solyc03g046410.3.1	12547723	12547861	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g018125.1.1	mRNA:Solyc05g018130.3.1	20057494	20058865	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14333.1	mRNA:Solyc05g017990.3.1	19352474	19352521	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14333.1	mRNA:Solyc05g017990.3.1	19354080	19354192	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g089250.3.1	CUFF.7088.2	51755686	51756155	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g089290.3.1	CUFF.7092.2	51794328	51794411	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g089415.1.1	CUFF.7106.2	51891671	51891732	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g089415.1.1	mRNA:Solyc02g089430.1.1	51895284	51895322	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g089515.1.1	mRNA:Solyc02g089530.3.1	51958779	51959725	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7114.3	mRNA:Solyc02g089520.2.1	51951813	51952197	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7119.1	mRNA:Solyc02g089615.1.1	52007393	52007503	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7126.1	mRNA:Solyc02g089720.2.1	52098175	52098345	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7124.1	mRNA:Solyc02g089680.3.1	52071660	52071765	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7124.1	mRNA:Solyc02g089685.1.1	52074819	52075051	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7128.1	mRNA:Solyc02g089750.4.1	52109375	52109441	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7127.2	CUFF.7127.1	52107677	52107784	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g090040.2.1	mRNA:Solyc02g090043.1.1	52346182	52346265	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7146.1	mRNA:Solyc02g089940.3.1	52267681	52267904	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7139.1	CUFF.7139.2	52189284	52189522	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7139.1	mRNA:Solyc02g089850.3.1	52190029	52190084	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g089930.3.1	CUFF.7144.2	52243660	52243762	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g089930.3.1	CUFF.7144.2	52241145	52241234	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g089930.3.1	CUFF.7144.2	52240543	52240685	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g020120.2.1	CUFF.31629.4	14125547	14125638	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31629.3	CUFF.31629.4	14125748	14125876	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g019970.1.1	CUFF.31604.2	12761456	12761714	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g019960.2.1	CUFF.31603.2	12761446	12761514	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g019975.1.1	mRNA:Solyc12g019990.1.1	12864181	12864223	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14262.2	mRNA:Solyc05g016180.3.1	14724611	14724829	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7158.1	mRNA:Solyc02g090220.3.1	52482711	52482840	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14283.1	CUFF.14283.3	15429979	15431761	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14283.2	CUFF.14283.3	15427236	15429342	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14283.2	CUFF.14283.3	15429979	15430467	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14283.2	mRNA:Solyc05g016253.1.1	15428414	15428822	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14288.2	mRNA:Solyc05g016370.2.1	16004169	16004272	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7223.1	mRNA:Solyc02g090920.2.1	53033188	53033283	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g090890.3.1	CUFF.7221.2	53010580	53010651	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7218.2	mRNA:Solyc02g090850.3.1	52962148	52962379	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g090690.2.1	CUFF.7203.3	52863073	52863159	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g090540.3.1	CUFF.7179.2	52705333	52705424	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g090500.3.1	CUFF.7175.2	52677155	52677233	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7175.2	CUFF.7175.3	52677302	52677996	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g090500.3.1	CUFF.7175.2	52678839	52679499	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g090500.3.1	CUFF.7175.3	52679758	52679902	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g090510.3.1	mRNA:Solyc02g090515.1.1	52693295	52693383	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7188.1	mRNA:Solyc02g090560.3.1	52734295	52734388	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g090530.3.1	CUFF.7178.2	52701094	52701216	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7182.1	mRNA:Solyc02g090545.1.1	52713930	52714043	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g090260.2.1	CUFF.7161.2	52505038	52505207	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7161.2	mRNA:Solyc02g090265.1.1	52511814	52511834	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7161.4	mRNA:Solyc02g090267.1.1	52512804	52512868	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7168.1	mRNA:Solyc02g090410.3.1	52608385	52608441	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g051340.2.1	CUFF.27689.2	51890741	51890817	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g021230.2.1	CUFF.31655.3	14937206	14937227	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31741.1	mRNA:Solyc12g076320.2.1	22272927	22273658	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31679.2	mRNA:Solyc12g077680.1.1	17846013	17846087	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g015433.1.1	CUFF.14163.2	10568467	10568833	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31692.1	mRNA:Solyc12g077590.2.1	18655066	18655152	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14164.1	mRNA:Solyc05g015460.3.1	10589622	10590377	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g052580.2.1	CUFF.27711.2	52890354	52890437	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g052745.1.1	CUFF.27722.2	53302412	53302677	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14187.1	mRNA:Solyc05g015535.1.1	11397937	11398096	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7238.1	mRNA:Solyc02g091040.3.1	53118928	53119019	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14203.1	mRNA:Solyc05g015656.1.1	11662216	11662244	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14201.1	mRNA:Solyc05g015630.3.1	11599831	11599917	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14200.1	mRNA:Solyc05g015613.1.1	11527533	11527630	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7228.1	mRNA:Solyc02g091020.2.1	53089136	53089151	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7228.1	CUFF.7228.3	53090647	53090946	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g091160.3.1	CUFF.7248.2	53197645	53197716	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g091170.3.1	CUFF.7248.5	53199765	53199910	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7235.1	CUFF.7235.2	53102305	53102771	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7235.2	mRNA:Solyc02g091027.1.1	53102151	53102200	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g015840.3.1	mRNA:Solyc05g015843.1.1	12398967	12398979	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g015725.1.1	CUFF.14222.2	11841036	11841149	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g091620.2.1	CUFF.7274.3	53521796	53523538	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g091627.1.1	CUFF.7274.3	53512157	53512246	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7292.1	mRNA:Solyc02g091660.3.1	53540913	53541006	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g091810.2.1	CUFF.7304.3	53667317	53667407	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7303.1	mRNA:Solyc02g091800.3.1	53650145	53650254	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7296.2	mRNA:Solyc02g091733.1.1	53615220	53615300	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g091290.3.1	CUFF.7254.2	53269033	53269093	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g091350.3.1	CUFF.7259.2	53314967	53315397	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7269.3	mRNA:Solyc02g091525.1.1	53439138	53439222	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7269.2	mRNA:Solyc02g091525.1.1	53440489	53440579	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7352.1	mRNA:Solyc02g092310.3.1	54061142	54061229	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g092285.1.1	CUFF.7350.2	54048848	54048867	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7350.3	mRNA:Solyc02g092290.3.1	54052411	54052506	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g098590.3.1	CUFF.26093.5	72899789	72899888	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g092145.1.1	mRNA:Solyc02g092150.3.1	53976297	53976847	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7341.1	mRNA:Solyc02g092200.3.1	53998974	53999062	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g098380.2.1	CUFF.26073.2	72715583	72716040	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g092353.1.1	CUFF.7354.2	54086522	54086527	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7354.2	mRNA:Solyc02g092357.1.1	54086945	54086977	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g098490.3.1	CUFF.26080.2	72811252	72811323	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g008890.2.1	CUFF.18804.2	3862012	3862073	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g008820.3.1	mRNA:Solyc07g008825.1.1	3785641	3785875	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3141.1	mRNA:Solyc01g096440.3.1	87406113	87406259	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7307.2	mRNA:Solyc02g091820.2.1	53680838	53680922	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g008760.3.1	CUFF.18794.2	3728222	3728311	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g098370.3.1	mRNA:Solyc09g098360.3.1	72699391	72699554	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18811.2	mRNA:Solyc07g008970.3.1	3993024	3993141	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g092070.3.1	CUFF.7334.2	53918677	53918768	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g092070.3.1	mRNA:Solyc02g092075.1.1	53920361	53920709	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7329.1	mRNA:Solyc02g092030.2.1	53879910	53879994	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g092010.3.1	CUFF.7325.3	53867173	53867258	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g098220.3.1	mRNA:Solyc09g098235.1.1	72577565	72578196	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18815.2	mRNA:Solyc07g009110.2.1	4068489	4068573	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g096970.3.1	CUFF.3178.2	87842682	87843147	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g097020.3.1	CUFF.3182.2	87875909	87875985	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3189.1	mRNA:Solyc01g097090.1.1	87917666	87919065	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3184.1	mRNA:Solyc01g097030.3.1	87882825	87882936	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3192.1	mRNA:Solyc01g097130.3.1	87968892	87969343	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3205.1	mRNA:Solyc01g097230.3.1	88036662	88036854	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3211.1	mRNA:Solyc01g097320.3.1	88098023	88098128	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3210.1	mRNA:Solyc01g097300.3.1	88076387	88076472	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g009330.3.1	mRNA:Solyc07g009337.1.1	4384379	4384514	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g096520.3.1	CUFF.3149.2	87479887	87479979	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3164.2	mRNA:Solyc01g096740.3.1	87629937	87630009	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3164.2	mRNA:Solyc01g096740.3.1	87628534	87628597	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3164.2	mRNA:Solyc01g096740.3.1	87627996	87628080	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g096690.2.1	CUFF.3160.2	87593031	87593055	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g092460.3.1	CUFF.26000.2	72028002	72028087	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g093190.3.1	CUFF.7430.4	54777890	54777974	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g093190.3.1	CUFF.7430.4	54786000	54786207	+	1^2-,0	intron retention
SL3.0ch09	CUFF.26001.1	mRNA:Solyc09g092490.3.1	72039098	72039816	+	1^2-,0	intron retention
SL3.0ch09	CUFF.26003.1	mRNA:Solyc09g092580.3.1	72089223	72089476	+	1^2-,0	intron retention
SL3.0ch09	CUFF.26010.1	mRNA:Solyc09g092710.3.1	72139745	72139869	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g097870.3.1	CUFF.26020.2	72364164	72364264	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g097830.3.1	CUFF.26017.2	72339103	72339208	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g097930.3.1	CUFF.26024.2	72408455	72408580	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g092710.3.1	mRNA:Solyc02g092715.1.1	54344721	54344847	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7370.1	mRNA:Solyc02g092600.3.1	54285776	54285797	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7370.1	mRNA:Solyc02g092620.3.1	54290264	54291518	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g014590.3.1	CUFF.18865.2	4926866	4926952	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g095680.2.1	CUFF.3067.2	86749491	86750693	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g092660.3.1	CUFF.7374.2	54311723	54311803	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g092660.3.1	CUFF.7374.2	54313025	54313129	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3065.2	CUFF.3065.3	86736186	86736279	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18874.2	mRNA:Solyc07g014610.3.1	4959448	4959506	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18887.1	mRNA:Solyc07g014660.2.1	5048822	5048895	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3063.2	mRNA:Solyc01g095590.3.1	86685836	86685933	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g095460.3.1	CUFF.3052.2	86583722	86583818	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7399.1	mRNA:Solyc02g092920.3.1	54504892	54505136	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g092210.3.1	CUFF.25982.2	71829421	71829654	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25984.1	mRNA:Solyc09g092230.2.1	71839583	71839663	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g092200.2.1	CUFF.25981.2	71827179	71827221	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7387.1	mRNA:Solyc02g092810.3.1	54411479	54411547	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3102.1	mRNA:Solyc01g096070.3.1	87058566	87058656	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3102.1	mRNA:Solyc01g096070.3.1	87059800	87059876	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g095990.3.1	mRNA:Solyc01g096015.1.1	86983485	86984771	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3107.1	mRNA:Solyc01g096160.3.1	87136364	87136575	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3107.1	mRNA:Solyc01g096160.3.1	87135028	87135073	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3096.1	mRNA:Solyc01g096030.3.1	86995119	86995180	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3087.1	mRNA:Solyc01g095930.3.1	86943844	86944061	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g096390.3.1	CUFF.3133.2	87359596	87359638	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18937.1	mRNA:Solyc07g017290.3.1	6651084	6651119	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g096205.1.1	CUFF.3122.2	87179308	87180342	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3072.1	mRNA:Solyc01g095730.3.1	86798684	86798779	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21064.1	mRNA:Solyc08g006440.3.1	1044835	1045340	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g006330.3.1	CUFF.21058.2	991238	991424	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7480.2	CUFF.7480.1	55153013	55153335	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7482.1	mRNA:Solyc02g093810.3.1	55155713	55155791	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g006240.2.1	CUFF.21044.2	924721	924801	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7498.1	mRNA:Solyc02g093960.3.1	55278272	55278360	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7488.1	mRNA:Solyc02g093880.3.1	55218837	55218963	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g093870.3.1	CUFF.7485.2	55204581	55204659	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7446.1	mRNA:Solyc02g093410.3.1	54924852	54924938	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g093440.3.1	CUFF.7449.2	54954798	54954880	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19026.2	mRNA:Solyc07g017990.3.1	8753996	8754074	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g093330.3.1	CUFF.7437.2	54868577	54868904	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7437.2	mRNA:Solyc02g093335.1.1	54870227	54870454	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7436.5	CUFF.7436.4	54860061	54860156	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7436.2	CUFF.7436.3	54861310	54861507	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7436.1	CUFF.7436.5	54859325	54859405	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18975.1	mRNA:Solyc07g017680.2.1	7721678	7722641	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18975.1	mRNA:Solyc07g017680.2.1	7723125	7723213	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g017660.2.1	CUFF.18969.2	7711707	7711784	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18969.3	mRNA:Solyc07g017650.3.1	7713782	7713838	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g017535.1.1	CUFF.18955.1	7471821	7471926	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18945.1	mRNA:Solyc07g017430.3.1	6951816	6951838	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g005710.3.1	mRNA:Solyc08g005720.3.1	567833	567900	+	1^2-,0	intron retention
SL3.0ch08	CUFF.20962.1	mRNA:Solyc08g005490.3.1	366549	366643	-	1^2-,0	intron retention
SL3.0ch01	CUFF.407.1	mRNA:Solyc01g005080.3.1	72218	72312	-	1^2-,0	intron retention
SL3.0ch08	CUFF.20973.1	mRNA:Solyc08g005570.3.1	428713	428950	+	1^2-,0	intron retention
SL3.0ch08	CUFF.20973.2	mRNA:Solyc08g005575.1.1	429869	430565	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g005600.3.1	CUFF.20978.2	448245	448499	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7553.1	mRNA:Solyc02g094510.3.1	55669211	55669281	-	1^2-,0	intron retention
SL3.0ch08	CUFF.20930.1	mRNA:Solyc08g005180.1.1	120265	120367	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7550.2	CUFF.7550.1	55612928	55612999	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7550.1	mRNA:Solyc02g094460.2.1	55613248	55613335	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g094445.1.1	mRNA:Solyc02g094450.2.1	55609956	55610077	-	1^2-,0	intron retention
SL3.0ch08	CUFF.20934.2	CUFF.20934.3	167330	167600	+	1^2-,0	intron retention
SL3.0ch08	CUFF.20940.1	mRNA:Solyc08g005305.1.1	233121	233607	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7532.2	CUFF.7532.1	55481740	55482356	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g094180.3.1	CUFF.7521.2	55426215	55426322	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27790.1	mRNA:Solyc10g054440.2.1	55366722	55366827	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3273.1	mRNA:Solyc01g098150.3.1	88604963	88605201	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7511.2	mRNA:Solyc02g094100.3.1	55378942	55379016	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g094080.1.1	CUFF.7509.2	55345577	55345660	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5708.2	CUFF.5708.1	39737658	39737735	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5708.2	CUFF.5708.1	39733124	39733571	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5708.1	mRNA:Solyc02g069203.1.1	39733010	39733090	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3262.1	CUFF.3262.4	88519235	88519320	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3262.3	CUFF.3262.4	88518811	88518860	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3246.2	mRNA:Solyc01g097820.3.1	88403236	88403357	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27750.2	mRNA:Solyc10g054040.2.1	54473957	54474026	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19086.1	mRNA:Solyc07g018390.2.1	10510620	10510708	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19086.1	mRNA:Solyc07g018400.3.1	10521009	10521113	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g068895.1.1	CUFF.5669.3	39344236	39344579	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19045.1	mRNA:Solyc07g018180.2.1	9634510	9634601	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19045.1	mRNA:Solyc07g018180.2.1	9636247	9636767	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g097650.3.1	CUFF.3231.3	88303596	88303716	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g097670.3.1	CUFF.3233.3	88309470	88309561	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3233.2	CUFF.3233.3	88308997	88309076	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5666.1	mRNA:Solyc02g068863.1.1	39323386	39323422	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5664.1	mRNA:Solyc02g068830.2.1	39313332	39313411	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27740.1	mRNA:Solyc10g053880.1.1	54076963	54077075	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g068820.2.1	CUFF.5662.2	39300205	39300304	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5662.2	mRNA:Solyc02g068825.1.1	39304365	39304468	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3242.1	mRNA:Solyc01g097730.3.1	88330844	88330886	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3242.1	mRNA:Solyc01g097735.1.1	88331616	88331670	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3224.2	CUFF.3224.1	88162360	88162654	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3224.2	mRNA:Solyc01g097430.3.1	88161918	88162012	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g097530.2.1	CUFF.3228.2	88224276	88224389	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19049.1	mRNA:Solyc07g018235.1.1	9791962	9792031	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3230.1	mRNA:Solyc01g097620.1.1	88273985	88274083	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3222.1	mRNA:Solyc01g097420.1.1	88153918	88154001	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3216.1	mRNA:Solyc01g097370.1.1	88135591	88135668	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3218.2	mRNA:Solyc01g097380.2.1	88139335	88139721	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5649.2	CUFF.5649.3	39262641	39262863	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g005660.2.1	CUFF.448.3	461033	461367	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g005650.2.1	CUFF.447.2	456262	456325	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g005820.3.1	CUFF.459.2	539322	539717	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g005755.1.1	mRNA:Solyc01g005760.3.1	496945	497963	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18495.2	mRNA:Solyc07g005490.3.1	392192	392287	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18548.1	mRNA:Solyc07g005990.3.1	843427	843510	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18547.2	mRNA:Solyc07g005950.3.1	789838	789894	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18531.2	mRNA:Solyc07g005790.3.1	645242	645821	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g006030.3.1	CUFF.18550.3	867218	867244	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18550.2	CUFF.18550.3	881010	881129	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18550.2	CUFF.18550.3	866922	867211	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g067740.3.1	CUFF.5553.2	38428814	38428894	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5564.1	mRNA:Solyc02g067820.3.1	38502234	38502277	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27797.1	mRNA:Solyc10g054480.2.1	55463290	55463384	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g054725.1.1	CUFF.27808.2	55759756	55759939	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27808.2	mRNA:Solyc10g054730.1.1	55760964	55761073	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5609.1	mRNA:Solyc02g068180.3.1	38769681	38769993	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5567.1	mRNA:Solyc02g067860.3.1	38531954	38532364	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5569.1	mRNA:Solyc02g067900.3.1	38556541	38556640	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5589.1	mRNA:Solyc02g068000.2.1	38636326	38636593	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g068440.3.1	mRNA:Solyc02g068445.1.1	38958743	38958830	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g005170.2.1	CUFF.413.2	143775	144811	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5619.1	mRNA:Solyc02g068260.2.1	38815080	38815213	-	1^2-,0	intron retention
SL3.0ch01	CUFF.430.1	mRNA:Solyc01g005360.3.1	257400	257485	+	1^2-,0	intron retention
SL3.0ch01	CUFF.418.1	mRNA:Solyc01g005210.3.1	169204	169225	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27842.1	CUFF.27842.4	56314509	56314600	+	1^2-,0	intron retention
SL3.0ch01	CUFF.432.1	mRNA:Solyc01g005460.3.1	315077	315790	-	1^2-,0	intron retention
SL3.0ch01	CUFF.511.1	mRNA:Solyc01g006680.3.1	1261656	1261818	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g006545.1.1	mRNA:Solyc01g006550.3.1	1125289	1126334	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g006140.3.1	CUFF.18565.2	983484	983510	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18589.2	mRNA:Solyc07g006550.2.1	1371207	1371286	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g006480.3.1	CUFF.18583.2	1260307	1260500	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g006820.3.1	CUFF.18610.2	1692611	1692717	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18603.1	mRNA:Solyc07g006760.3.1	1604674	1604732	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g006750.3.1	mRNA:Solyc07g006755.1.1	1586708	1586775	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27850.1	mRNA:Solyc10g055370.2.1	56595100	56595179	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27850.1	mRNA:Solyc10g055370.2.1	56593995	56594076	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27874.1	mRNA:Solyc10g055620.2.1	57040520	57041128	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g055610.2.1	CUFF.27873.4	57005898	57007033	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g066940.3.1	CUFF.5484.3	37758467	37759007	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27861.2	mRNA:Solyc10g055540.2.1	56848329	56849093	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5497.1	mRNA:Solyc02g067085.1.1	37879925	37880013	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5504.2	CUFF.5504.1	37910694	37910770	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5504.2	mRNA:Solyc02g067120.3.1	37910426	37910497	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27859.1	CUFF.27859.3	56745951	56746186	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5515.1	CUFF.5515.2	38023618	38023713	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5515.2	mRNA:Solyc02g067260.2.1	38016709	38017640	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5510.1	mRNA:Solyc02g067240.2.1	37995221	37995300	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g067350.3.1	CUFF.5521.2	38122467	38122545	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5514.1	mRNA:Solyc02g067250.2.1	38008227	38008285	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5519.1	mRNA:Solyc02g067310.3.1	38063275	38063456	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g055770.2.1	CUFF.27892.4	57347473	57347561	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g055770.2.1	CUFF.27892.3	57347084	57347159	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g055770.2.1	CUFF.27892.5	57346877	57346973	+	1^2-,0	intron retention
SL3.0ch01	CUFF.475.2	mRNA:Solyc01g006000.3.1	663358	664094	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g006000.3.1	CUFF.475.3	666853	667602	+	1^2-,0	intron retention
SL3.0ch01	CUFF.504.1	mRNA:Solyc01g006420.3.1	1030352	1030404	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5540.2	mRNA:Solyc02g067570.3.1	38291170	38291261	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g006340.3.1	CUFF.494.2	918203	918353	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5547.1	mRNA:Solyc02g067670.3.1	38374630	38374724	+	1^2-,0	intron retention
SL3.0ch01	CUFF.492.1	mRNA:Solyc01g006320.3.1	903924	904088	+	1^2-,0	intron retention
SL3.0ch01	CUFF.484.2	mRNA:Solyc01g006195.1.1	822564	823195	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18660.2	mRNA:Solyc07g007490.2.1	2183847	2183968	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18658.1	mRNA:Solyc07g007460.2.1	2166944	2167013	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18645.2	mRNA:Solyc07g007325.1.1	2067842	2067912	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18639.2	mRNA:Solyc07g007210.3.1	1956658	1956787	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g007230.3.1	CUFF.18640.2	1980790	1981058	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18635.1	mRNA:Solyc07g007200.3.1	1940030	1940340	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18627.1	mRNA:Solyc07g007060.2.1	1837382	1837464	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18622.2	mRNA:Solyc07g007000.1.1	1795179	1795431	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g092050.3.1	CUFF.25964.2	71694628	71695052	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25943.2	CUFF.25943.1	71542912	71542961	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g074420.1.1	CUFF.27899.2	57815832	57815893	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g091850.3.1	CUFF.25933.2	71535535	71535626	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27942.1	mRNA:Solyc10g074850.2.1	58627274	58627347	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g074823.1.1	CUFF.27937.2	58597590	58597739	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g074745.1.1	CUFF.27929.2	58469792	58471652	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g065230.3.1	CUFF.5440.2	36971840	36971923	+	1^2-,0	intron retention
SL3.0ch01	CUFF.517.2	CUFF.517.1	1336385	1336466	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27944.1	mRNA:Solyc10g074890.2.1	58659893	58659975	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27909.2	mRNA:Solyc10g074560.2.1	58190748	58190829	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27901.1	mRNA:Solyc10g074470.2.1	58072392	58072555	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27906.1	mRNA:Solyc10g074520.2.1	58124723	58124856	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g074620.2.1	CUFF.27914.2	58234972	58235038	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27917.1	mRNA:Solyc10g074650.2.1	58259797	58260127	-	1^2-,0	intron retention
SL3.0ch01	CUFF.559.1	mRNA:Solyc01g007170.3.1	1735193	1735314	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18683.1	mRNA:Solyc07g007700.2.1	2357548	2360223	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g007140.3.1	CUFF.556.2	1701390	1701559	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18690.1	mRNA:Solyc07g007780.3.1	2425765	2425882	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g007790.3.1	CUFF.575.2	1877066	1878376	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18679.1	mRNA:Solyc07g007690.3.1	2354695	2354759	+	1^2-,0	intron retention
SL3.0ch01	CUFF.537.1	mRNA:Solyc01g006910.3.1	1484598	1484655	-	1^2-,0	intron retention
SL3.0ch01	CUFF.531.1	mRNA:Solyc01g006860.3.1	1422782	1423157	-	1^2-,0	intron retention
SL3.0ch01	CUFF.524.1	mRNA:Solyc01g006825.1.1	1391051	1391154	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27962.1	mRNA:Solyc10g075040.2.1	58796789	58796940	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5458.1	mRNA:Solyc02g065540.2.1	37263936	37264145	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5457.1	mRNA:Solyc02g065515.1.1	37252986	37253013	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5460.2	CUFF.5460.1	37275951	37276058	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g065320.2.1	mRNA:Solyc02g094758.1.1	37064122	37065247	+	1^2-,0	intron retention
SL3.0ch01	CUFF.543.1	mRNA:Solyc01g006990.3.1	1555994	1556256	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g065350.3.1	mRNA:Solyc02g065360.3.1	37120202	37120313	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18737.1	mRNA:Solyc07g008170.2.1	2883549	2883646	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18750.2	mRNA:Solyc07g008340.3.1	3127963	3128039	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18697.1	CUFF.18697.2	2503209	2504173	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28012.1	mRNA:Solyc10g076790.2.1	59848448	59848521	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g076650.2.1	CUFF.28007.2	59704278	59704420	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28004.1	mRNA:Solyc10g076590.2.1	59652971	59653053	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28004.1	mRNA:Solyc10g076590.2.1	59656106	59656228	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g076530.2.1	CUFF.27999.2	59612960	59613210	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27999.2	mRNA:Solyc10g076533.1.1	59612984	59613210	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28000.1	mRNA:Solyc10g076537.1.1	59617576	59617693	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28002.1	mRNA:Solyc10g076560.1.1	59625861	59625951	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g076370.2.1	CUFF.27993.2	59434826	59434977	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27990.2	mRNA:Solyc10g076300.2.1	59326561	59326749	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27983.1	mRNA:Solyc10g076270.2.1	59279418	59279503	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27983.1	CUFF.27983.2	59284040	59284179	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27983.2	mRNA:Solyc10g076270.2.1	59280381	59284017	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g064640.3.1	CUFF.5403.1	36305098	36305275	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g064640.3.1	CUFF.5403.1	36295046	36295669	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g008430.2.1	CUFF.18757.2	3260394	3260421	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5402.1	mRNA:Solyc02g064590.2.1	36282686	36282909	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5402.1	mRNA:Solyc02g064595.1.1	36286082	36286101	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5402.1	CUFF.5402.4	36286001	36286101	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g064595.1.1	mRNA:Solyc02g064630.3.1	36295695	36296250	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g064740.3.1	CUFF.5410.2	36409960	36410836	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5417.1	CUFF.5417.2	36522708	36522777	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5417.1	mRNA:Solyc02g064806.1.1	36523346	36523388	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5383.2	mRNA:Solyc02g063210.1.1	35812403	35812450	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5383.2	CUFF.5383.4	35812980	35813146	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5385.1	mRNA:Solyc02g063255.1.1	35856038	35856196	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g061990.3.1	CUFF.5282.2	34102762	34103032	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g061950.3.1	CUFF.5279.2	34039352	34039486	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5276.1	mRNA:Solyc02g061930.2.1	34031195	34031280	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g061920.2.1	CUFF.5275.2	34023702	34023753	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21426.1	mRNA:Solyc08g016050.3.1	6605881	6606011	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g015694.1.1	CUFF.21399.2	5471720	5471832	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21404.3	mRNA:Solyc08g015770.3.1	5578234	5578416	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g015670.3.1	CUFF.21392.2	5214024	5214118	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g014470.3.1	CUFF.21377.2	4532885	4532985	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g079405.1.1	CUFF.28130.2	61071707	61071792	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g079405.1.1	CUFF.28130.2	61071290	61071368	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g099487.1.1	CUFF.3383.8	89609846	89610079	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g021650.2.1	CUFF.19216.4	20534834	20534960	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3409.2	mRNA:Solyc01g099730.3.1	89764685	89764897	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28110.2	mRNA:Solyc10g079120.2.1	60859197	60859250	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g099660.3.1	CUFF.3400.2	89717350	89717430	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28112.1	mRNA:Solyc10g079150.2.1	60883449	60883530	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3353.1	mRNA:Solyc01g099320.3.1	89488565	89488641	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19187.1	mRNA:Solyc07g021410.1.1	17982990	17983066	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g021450.2.1	mRNA:Solyc07g021440.1.1	17999227	17999277	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3354.1	mRNA:Solyc01g099330.3.1	89493942	89494104	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28089.1	mRNA:Solyc10g078900.2.1	60686113	60686239	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28091.1	mRNA:Solyc10g078950.2.1	60725422	60725543	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g099415.1.1	CUFF.3359.3	89563078	89563287	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28082.1	mRNA:Solyc10g078750.2.1	60604377	60604489	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g099440.3.1	mRNA:Solyc01g099450.3.1	89573842	89573933	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g021180.2.1	CUFF.19167.2	16763955	16764010	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3344.1	mRNA:Solyc01g099200.3.1	89382659	89382756	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g099210.3.1	CUFF.3345.2	89389053	89389149	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5298.1	mRNA:Solyc02g062220.2.1	34347322	34347393	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5297.1	mRNA:Solyc02g062210.2.1	34343394	34343481	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g062190.2.1	CUFF.5294.2	34320613	34320688	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5332.1	mRNA:Solyc02g062655.1.1	34938075	34938124	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5332.1	mRNA:Solyc02g062650.3.1	34936005	34936093	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5358.1	mRNA:Solyc02g062980.2.1	35514640	35514694	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g062520.3.1	CUFF.5317.2	34759283	34759379	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28072.1	mRNA:Solyc10g078630.2.1	60512141	60512233	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g078670.2.1	CUFF.28074.2	60538139	60538234	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g078325.1.1	mRNA:Solyc10g078330.2.1	60285105	60285121	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g078420.2.1	CUFF.28054.2	60370699	60370799	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28032.1	mRNA:Solyc10g077090.2.1	60085970	60087019	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g077000.2.1	mRNA:Solyc10g077005.1.1	60032901	60032945	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g076870.2.1	CUFF.28019.2	59958011	59958111	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g100290.3.1	CUFF.3454.2	90245576	90245672	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g100290.3.1	CUFF.3454.2	90248668	90248689	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3443.3	mRNA:Solyc01g100240.3.1	90190225	90190309	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3444.2	mRNA:Solyc01g100260.3.1	90208792	90208818	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g100280.3.1	CUFF.3453.2	90232846	90233055	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g100280.3.1	CUFF.3453.2	90235577	90235665	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3431.1	mRNA:Solyc01g100110.3.1	90078778	90078958	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3431.1	mRNA:Solyc01g100110.3.1	90078207	90078283	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3434.2	mRNA:Solyc01g100120.3.1	90089064	90089192	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3422.2	mRNA:Solyc01g099970.3.1	89941147	89941240	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3422.2	mRNA:Solyc01g099970.3.1	89938760	89938859	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3419.2	mRNA:Solyc01g099930.3.1	89919584	89919919	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3413.1	mRNA:Solyc01g099800.3.1	89826262	89826338	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3411.1	mRNA:Solyc01g099745.1.1	89781177	89781267	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5379.1	mRNA:Solyc02g063160.3.1	35779436	35779515	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19370.1	mRNA:Solyc07g026620.3.1	29722827	29722923	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g101180.3.1	CUFF.3518.2	90899071	90899149	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g080397.1.1	CUFF.28221.2	61807643	61808299	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g101060.3.1	CUFF.3506.2	90797304	90797371	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g025500.2.1	CUFF.19353.2	28726689	28727269	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g102280.3.1	mRNA:Solyc01g102285.1.1	90975342	90975612	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28233.1	mRNA:Solyc10g080600.2.1	61944903	61945117	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g080650.2.1	CUFF.28237.2	62008967	62009008	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28249.1	mRNA:Solyc10g080855.1.1	62174356	62174394	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28253.1	mRNA:Solyc10g080910.1.1	62209754	62209867	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28254.2	mRNA:Solyc10g080990.2.1	62303283	62303358	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28255.1	mRNA:Solyc10g081010.2.1	62318705	62318820	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g025175.1.1	mRNA:Solyc07g025180.1.1	26448501	26448610	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g033040.2.1	CUFF.5146.2	30185032	30185082	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g033030.3.1	CUFF.5145.2	30157891	30158161	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3475.3	mRNA:Solyc01g100620.2.1	90478712	90478820	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3473.1	mRNA:Solyc01g100570.3.1	90437029	90437220	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g080180.2.1	CUFF.28201.2	61671346	61671408	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28220.1	mRNA:Solyc10g080393.1.1	61799931	61799999	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g080320.2.1	mRNA:Solyc10g080330.2.1	61744432	61744853	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28208.2	CUFF.28208.1	61727314	61728853	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5165.2	mRNA:Solyc02g036310.3.1	30973693	30973786	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g100960.3.1	CUFF.3497.3	90715607	90715688	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g103250.3.1	mRNA:Solyc01g103245.1.1	91778594	91778689	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5201.2	mRNA:Solyc02g038670.2.1	31756087	31756174	+	1^2-,0	intron retention
SL3.0ch07	CUFF.19259.2	CUFF.19259.4	23732891	23732968	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8598.2	mRNA:Solyc03g058880.3.1	28652489	28652596	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8597.1	mRNA:Solyc03g058860.3.1	28550897	28550964	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3601.3	mRNA:Solyc01g103090.3.1	91637029	91637787	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19272.1	mRNA:Solyc07g024095.1.1	24248304	24248343	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28147.1	mRNA:Solyc10g079660.2.1	61290349	61290435	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8604.2	mRNA:Solyc03g058930.3.1	29076566	29077017	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8604.2	mRNA:Solyc03g058940.3.1	29077085	29077296	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g079670.2.1	CUFF.28149.2	61297246	61297334	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g025105.1.1	CUFF.19275.2	24476925	24477031	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g025105.1.1	CUFF.19275.2	24477743	24477788	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g025105.1.1	CUFF.19275.3	24477169	24477241	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g025105.1.1	mRNA:Solyc07g025110.1.1	24477452	24477556	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3588.2	CUFF.3588.3	91537017	91538083	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3588.2	CUFF.3588.3	91540543	91540802	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28190.2	CUFF.28190.1	61608506	61608619	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28190.1	mRNA:Solyc10g080090.2.1	61608506	61608618	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g059080.2.1	CUFF.8620.2	29812921	29812999	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28181.2	mRNA:Solyc10g079990.2.1	61548174	61548772	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g059140.3.1	mRNA:Solyc03g059150.3.1	30055937	30056045	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g059160.2.1	mRNA:Solyc03g059155.1.1	30065407	30065428	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g059190.3.1	CUFF.8640.2	30123412	30123506	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3543.1	mRNA:Solyc01g102580.3.1	91234308	91234339	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3540.1	mRNA:Solyc01g102510.3.1	91176493	91176584	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g102460.3.1	mRNA:Solyc01g102450.3.1	91135297	91135527	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g102460.3.1	CUFF.3536.5	91137487	91137940	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc00g007070.3.1	CUFF.5225.2	32699276	32700425	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3534.2	mRNA:Solyc01g102360.2.1	91073621	91073679	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3583.1	mRNA:Solyc01g102880.2.1	91432694	91432766	-	1^2-,0	intron retention
SL3.0ch07	CUFF.19222.1	mRNA:Solyc07g021710.3.1	21218597	21218740	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g022830.3.1	CUFF.19235.2	22387017	22387079	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc02g024060.2.1	mRNA:Solyc02g024065.1.1	91327062	91327259	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3558.2	CUFF.3558.1	91278519	91278744	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3558.2	mRNA:Solyc01g102650.2.1	91278369	91278447	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3554.1	CUFF.3554.2	91271971	91273041	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3561.1	mRNA:Solyc01g102675.1.1	91292089	91292178	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21079.2	CUFF.21079.1	1200744	1200840	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21079.2	mRNA:Solyc08g006605.1.1	1200692	1200741	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21091.1	mRNA:Solyc08g006700.3.1	1258900	1259043	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21091.1	mRNA:Solyc08g006705.1.1	1258776	1258841	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3655.1	mRNA:Solyc01g103660.3.1	92093302	92093389	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3668.1	mRNA:Solyc01g103780.3.1	92182967	92183063	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g007330.3.1	CUFF.21144.3	1903524	1903629	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g007300.2.1	CUFF.21139.2	1854115	1854312	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g007300.2.1	mRNA:Solyc08g007280.2.1	1853930	1854043	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21131.1	mRNA:Solyc08g007230.2.1	1811079	1811121	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g103785.1.1	mRNA:Solyc01g103790.3.1	92197060	92197115	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3669.2	mRNA:Solyc01g103790.3.1	92197297	92198418	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3680.2	CUFF.3680.3	92321718	92321792	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21129.1	mRNA:Solyc08g007120.3.1	1694243	1694337	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3618.3	CUFF.3618.6	91821354	91821376	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g103335.1.1	CUFF.3626.2	91851972	91852063	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g034410.3.1	CUFF.16571.2	24357317	24357390	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g006910.3.1	mRNA:Solyc08g006913.1.1	1466155	1466179	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g006910.3.1	CUFF.21113.4	1480802	1480888	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g035420.1.1	CUFF.16576.3	24397064	24397115	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21104.1	mRNA:Solyc08g006840.3.1	1373952	1374235	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16559.1	mRNA:Solyc06g034230.2.1	24058414	24060127	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3650.1	mRNA:Solyc01g103600.3.1	92056913	92057036	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3650.1	mRNA:Solyc01g103605.1.1	92057891	92057930	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g103610.3.1	CUFF.3650.5	92060785	92060921	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g103610.3.1	CUFF.3650.5	92060106	92060142	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16562.1	mRNA:Solyc06g034238.1.1	24095673	24095757	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16580.1	mRNA:Solyc06g035450.3.1	24447857	24447892	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21156.1	mRNA:Solyc08g007440.2.1	2005209	2005306	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3825.1	mRNA:Solyc01g104930.2.1	93155688	93155788	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3812.1	mRNA:Solyc01g104840.3.1	93065484	93065537	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21173.1	mRNA:Solyc08g007660.2.1	2167997	2168142	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3807.1	mRNA:Solyc01g104725.1.1	93017961	93018371	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3807.1	mRNA:Solyc01g104725.1.1	93017034	93017087	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21174.2	mRNA:Solyc08g007710.3.1	2192912	2193314	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3791.2	mRNA:Solyc01g104630.3.1	92957547	92957685	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g104620.3.1	CUFF.3790.2	92952944	92953084	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3777.1	mRNA:Solyc01g104540.3.1	92893817	92893838	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21147.1	mRNA:Solyc08g007340.3.1	1915400	1915515	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21149.2	mRNA:Solyc08g007380.3.1	1960766	1960867	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28274.1	mRNA:Solyc10g081270.2.1	62517540	62517628	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5098.1	mRNA:Solyc02g032410.3.1	28930167	28930250	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21216.2	CUFF.21216.1	2503957	2504348	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21216.2	mRNA:Solyc08g008010.3.1	2505235	2505293	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28263.1	mRNA:Solyc10g081140.2.1	62406081	62406373	-	1^2-,0	intron retention
SL3.0ch02	CUFF.5104.2	mRNA:Solyc02g032525.1.1	29046163	29046252	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3771.1	mRNA:Solyc01g104480.3.1	92830443	92830466	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3738.2	CUFF.3738.1	92722223	92722524	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3738.2	CUFF.3738.1	92721519	92721785	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3738.2	CUFF.3738.1	92721175	92721217	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3738.2	CUFF.3738.1	92713144	92713180	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3738.2	mRNA:Solyc01g104432.1.1	92717360	92717418	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3734.4	mRNA:Solyc01g104430.2.1	92699139	92699221	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3734.4	mRNA:Solyc01g104430.2.1	92697987	92698093	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3731.1	mRNA:Solyc01g104410.3.1	92678209	92678289	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3731.1	CUFF.3731.3	92675021	92675719	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g007810.2.1	mRNA:Solyc08g007805.1.1	2325300	2325345	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3750.2	mRNA:Solyc01g104435.1.1	92754883	92754908	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3750.2	CUFF.3750.3	92753090	92753356	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3750.2	CUFF.3750.4	92754592	92754843	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g032330.3.1	mRNA:Solyc02g032333.1.1	28724742	28724860	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g104340.2.1	CUFF.3718.3	92642774	92642865	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g032200.3.1	CUFF.5079.2	28489551	28489635	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28313.1	mRNA:Solyc10g081880.2.1	62946037	62946128	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g081870.2.1	CUFF.28310.2	62939768	62940415	-	1^2-,0	intron retention
SL3.0ch10	CUFF.28308.1	mRNA:Solyc10g081840.2.1	62934774	62934906	+	1^2-,0	intron retention
SL3.0ch10	CUFF.28297.1	mRNA:Solyc10g081710.2.1	62853462	62853562	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g032650.3.1	CUFF.5112.2	29389565	29389648	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g032650.3.1	CUFF.5112.2	29391112	29391185	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g081810.2.1	CUFF.28305.3	62917182	62917263	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5142.1	mRNA:Solyc02g032910.2.1	29941298	29941392	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21233.1	mRNA:Solyc08g008087.1.1	2580436	2580488	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3874.1	mRNA:Solyc01g105497.1.1	93541355	93541390	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3865.1	mRNA:Solyc01g105435.1.1	93502617	93502691	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g105350.2.1	mRNA:Solyc01g105355.1.1	93445625	93445950	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21243.3	CUFF.21243.2	2642292	2642347	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3883.1	mRNA:Solyc01g105620.3.1	93625731	93625869	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3882.1	mRNA:Solyc01g105570.3.1	93600998	93601245	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3882.1	CUFF.3882.2	93599512	93599865	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3882.1	mRNA:Solyc01g105570.3.1	93598591	93598665	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3892.1	mRNA:Solyc01g105780.3.1	93720524	93720568	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g105820.3.1	mRNA:Solyc01g105827.1.1	93756215	93756264	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g105820.3.1	mRNA:Solyc01g105827.1.1	93756543	93757037	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g008380.3.1	CUFF.21262.2	2808322	2808455	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g105775.1.1	CUFF.3891.2	93716583	93716701	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g105775.1.1	CUFF.3891.2	93715464	93715668	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21274.1	mRNA:Solyc08g008490.3.1	2872741	2872845	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g008480.3.1	mRNA:Solyc08g008485.1.1	2867509	2868080	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3901.2	mRNA:Solyc01g105870.3.1	93788709	93788798	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g105860.3.1	CUFF.3900.2	93779803	93779891	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21287.2	mRNA:Solyc08g013680.3.1	3145142	3145231	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g105180.3.1	CUFF.3844.2	93347954	93348045	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3842.1	mRNA:Solyc01g105160.3.1	93327624	93327697	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21286.1	mRNA:Solyc08g008640.3.1	3019326	3019473	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g008500.3.1	CUFF.21276.2	2891115	2891260	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3928.1	mRNA:Solyc01g106340.3.1	94169349	94169432	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3930.1	CUFF.3930.3	94173861	94173945	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3930.1	CUFF.3930.3	94174992	94175063	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3930.1	CUFF.3930.4	94181215	94181295	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3923.2	mRNA:Solyc01g106260.3.1	94114549	94114925	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21297.1	mRNA:Solyc08g013740.3.1	3203557	3203648	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g013750.3.1	mRNA:Solyc08g013753.1.1	3214934	3214992	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21308.1	mRNA:Solyc08g013805.1.1	3254600	3254628	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21308.1	mRNA:Solyc08g013805.1.1	3255507	3256443	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g013770.3.1	mRNA:Solyc08g013758.1.1	3232719	3232765	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g013770.3.1	mRNA:Solyc08g013758.1.1	3233271	3233360	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3945.1	mRNA:Solyc01g106570.3.1	94292613	94292696	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21309.1	mRNA:Solyc08g013820.3.1	3266631	3267104	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g106970.2.1	CUFF.3985.2	94567732	94567784	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g014010.3.1	CUFF.21341.2	3608307	3608380	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3970.1	mRNA:Solyc01g106920.3.1	94522504	94522577	-	1^2-,0	intron retention
SL3.0ch08	CUFF.21346.1	mRNA:Solyc08g014060.3.1	3672975	3673049	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3966.1	mRNA:Solyc01g106870.3.1	94485711	94485795	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g106770.3.1	CUFF.3957.2	94419898	94419989	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g014243.1.1	mRNA:Solyc08g014260.2.1	4001794	4002062	+	1^2-,0	intron retention
SL3.0ch08	CUFF.21369.1	mRNA:Solyc08g014300.3.1	4096596	4096681	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3916.1	mRNA:Solyc01g106175.1.1	94021005	94022067	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g106173.1.1	CUFF.3915.2	94018351	94019097	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g019627.1.1	mRNA:Solyc12g019680.1.1	10999460	10999551	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8965.2	mRNA:Solyc03g078400.3.1	52262318	52262892	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g050360.3.1	CUFF.16873.2	33058751	33058855	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g078480.2.1	CUFF.8973.5	52417403	52417479	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g078480.2.1	CUFF.8973.5	52419229	52419334	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16866.1	mRNA:Solyc06g050300.2.1	32959990	32960031	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8972.1	mRNA:Solyc03g078420.3.1	52320700	52320824	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16892.2	CUFF.16892.1	33407323	33407409	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16892.1	mRNA:Solyc06g050610.2.1	33409075	33409149	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16884.1	mRNA:Solyc06g050520.2.1	33297204	33297274	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31540.1	mRNA:Solyc12g019295.1.1	9918301	9919526	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8943.2	mRNA:Solyc03g078200.2.1	51597786	51597863	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31532.2	mRNA:Solyc12g019110.2.1	9150435	9150562	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31534.1	CUFF.31534.4	9329402	9329583	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g079865.1.1	CUFF.9010.2	53107045	53109437	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14667.2	mRNA:Solyc05g024120.2.1	30434411	30434506	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8997.1	mRNA:Solyc03g078800.2.1	52915483	52915737	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8997.1	mRNA:Solyc03g078800.2.1	52916202	52916276	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9000.1	mRNA:Solyc03g078813.1.1	52950071	52950950	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16941.1	mRNA:Solyc06g051020.2.1	34194266	34194561	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g051230.4.1	mRNA:Solyc06g051235.1.1	34519040	34519093	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g051310.3.1	CUFF.16967.2	34625621	34625668	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g051310.3.1	CUFF.16967.2	34631168	34631252	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g078535.1.1	mRNA:Solyc03g078540.1.1	52559073	52559358	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14613.1	mRNA:Solyc05g023680.3.1	28969077	28969174	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g023720.1.1	CUFF.14619.2	29081939	29082029	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14626.1	mRNA:Solyc05g023735.1.1	29148697	29148816	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14642.1	mRNA:Solyc05g023800.3.1	29362711	29362787	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31514.1	mRNA:Solyc12g017860.2.1	7595687	7595821	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g044510.2.1	CUFF.27078.1	26621190	26621307	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g017910.2.1	mRNA:Solyc12g017915.1.1	7765112	7765155	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27083.1	mRNA:Solyc10g044517.1.1	26718206	26718605	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g025790.3.1	CUFF.14744.2	36741391	36742866	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g062220.2.1	CUFF.27061.2	25327484	25327568	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27054.1	mRNA:Solyc10g062210.1.1	25316997	25317097	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g017675.1.1	CUFF.31499.2	7203155	7203292	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g017830.2.1	CUFF.31510.3	7453682	7453738	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g017835.1.1	CUFF.31510.3	7453682	7453718	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g017835.1.1	CUFF.31510.3	7482924	7483019	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g017835.1.1	CUFF.31510.3	7491118	7491139	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27018.1	mRNA:Solyc10g061995.1.1	23916368	23916379	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31466.1	mRNA:Solyc12g017420.2.1	6680787	6680872	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16789.1	CUFF.16789.2	31505379	31505816	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g048637.1.1	CUFF.16789.6	31509004	31509035	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g062160.2.1	CUFF.27037.2	24894354	24894436	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27027.1	CUFF.27027.2	24750286	24750463	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9025.1	mRNA:Solyc03g080075.1.1	53390252	53390319	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g048810.3.1	CUFF.16798.3	31836288	31836347	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16798.3	CUFF.16798.2	31835327	31835713	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9022.2	mRNA:Solyc03g080010.3.1	53337714	53338066	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9022.1	CUFF.9022.2	53325578	53326361	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9021.1	mRNA:Solyc03g080000.1.1	53323317	53323371	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g025683.1.1	CUFF.14724.2	35774736	35774815	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9059.1	mRNA:Solyc03g082470.3.1	53824281	53824407	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g082490.3.1	CUFF.9061.2	53842917	53843089	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g082490.3.1	CUFF.9061.2	53836420	53836527	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g082355.1.1	CUFF.9047.3	53726233	53726669	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g081335.1.1	CUFF.9044.3	53683302	53683393	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9058.2	mRNA:Solyc03g082450.3.1	53817551	53817679	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9040.1	mRNA:Solyc03g081300.3.1	53610579	53610674	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16828.1	mRNA:Solyc06g049060.3.1	32425959	32426047	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9036.3	CUFF.9036.2	53576944	53577093	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14684.1	mRNA:Solyc05g024377.1.1	31376423	31376430	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g024387.1.1	CUFF.14687.3	31633032	31633100	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14688.2	mRNA:Solyc05g024410.3.1	31641476	31641491	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16763.1	mRNA:Solyc06g043030.3.1	29963054	29963646	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16769.3	mRNA:Solyc06g043038.1.1	30375631	30375686	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g043070.3.1	CUFF.16748.3	29881055	29881294	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9113.1	mRNA:Solyc03g082940.3.1	54237563	54238168	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16736.2	CUFF.16736.1	28973545	28973670	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16736.2	CUFF.16736.5	28974272	28974859	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16736.1	CUFF.16736.5	28974572	28974620	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g036580.3.1	mRNA:Solyc06g036590.1.1	26786295	26786350	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16709.2	mRNA:Solyc06g036640.3.1	27090325	27090399	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9145.1	mRNA:Solyc03g083240.3.1	54514796	54514968	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9142.1	mRNA:Solyc03g083200.3.1	54471949	54472509	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g083195.1.1	CUFF.9141.2	54466590	54466694	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g083190.2.1	CUFF.9138.3	54460281	54460570	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9132.4	CUFF.9132.5	54411202	54411403	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9129.1	mRNA:Solyc03g083130.2.1	54388508	54388545	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9160.1	mRNA:Solyc03g083410.3.1	54707167	54707495	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9158.1	mRNA:Solyc03g083395.1.1	54669566	54669585	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g021145.1.1	CUFF.14509.3	26560764	26560818	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9149.1	mRNA:Solyc03g083310.3.1	54564681	54564734	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9188.1	mRNA:Solyc03g083670.2.1	55053051	55053141	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g018870.2.1	CUFF.14476.2	24440609	24440678	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g018870.2.1	CUFF.14476.2	24439860	24439940	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g083610.3.1	CUFF.9182.2	54991882	54991963	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14478.1	mRNA:Solyc05g018930.1.1	24604627	24604686	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g082990.3.1	CUFF.9115.2	54269603	54269671	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g082970.3.1	CUFF.9114.2	54244575	54244663	-	1^2-,0	intron retention
SL3.0ch06	CUFF.16675.1	mRNA:Solyc06g036420.2.1	26063125	26063286	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g036240.2.1	CUFF.16664.6	25807967	25808062	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g036240.2.1	CUFF.16664.7	25806636	25806802	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16664.9	CUFF.16664.12	25807618	25807764	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16662.1	mRNA:Solyc06g036200.2.1	25777646	25777746	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g036060.3.1	CUFF.16649.2	25536559	25536647	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g036060.3.1	CUFF.16649.2	25538041	25538125	+	1^2-,0	intron retention
SL3.0ch06	CUFF.16643.1	mRNA:Solyc06g035930.1.1	25372813	25374436	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9218.1	mRNA:Solyc03g093230.3.1	55854311	55854395	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9211.1	mRNA:Solyc03g093150.2.1	55778768	55779083	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14583.1	mRNA:Solyc05g021555.1.1	28071394	28071459	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14582.2	mRNA:Solyc05g021540.2.1	28066731	28066805	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9198.1	mRNA:Solyc03g083900.3.1	55255718	55255743	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g083785.1.1	CUFF.9190.2	55145324	55145388	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8659.3	mRNA:Solyc03g059360.1.1	31078631	31078731	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g047130.2.1	CUFF.27280.2	39808341	39808448	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g047110.2.1	CUFF.27279.2	39782516	39782696	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27284.1	mRNA:Solyc10g047150.2.1	39862168	39862280	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g013660.2.1	CUFF.31304.2	4505753	4506051	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31299.1	mRNA:Solyc12g013525.1.1	4382038	4382138	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g011360.2.1	CUFF.31293.2	4201318	4201406	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g011270.2.1	CUFF.31286.2	4138794	4138990	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g062740.3.1	mRNA:Solyc03g062745.1.1	34271959	34275079	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31266.1	mRNA:Solyc12g010980.2.1	3843782	3843825	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31271.1	mRNA:Solyc12g011080.2.1	3937917	3938002	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17215.2	mRNA:Solyc06g054625.1.1	37454773	37454849	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17233.2	mRNA:Solyc06g059805.1.1	37830182	37830268	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17228.2	mRNA:Solyc06g059760.3.1	37772813	37773605	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17226.2	mRNA:Solyc06g059755.1.1	37753283	37753435	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17241.1	mRNA:Solyc06g059900.3.1	37950974	37951038	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31248.1	mRNA:Solyc12g010745.1.1	3666035	3666117	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17255.3	CUFF.17255.2	38063221	38063314	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17255.3	CUFF.17255.4	38063532	38063594	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17258.1	mRNA:Solyc06g060017.1.1	38072713	38072737	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17268.2	mRNA:Solyc06g060140.3.1	38207547	38207743	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27364.1	mRNA:Solyc10g047810.2.1	42683304	42683351	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g063030.3.1	CUFF.8725.2	35256542	35256611	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g010340.2.1	CUFF.31219.2	3407393	3407439	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31220.1	mRNA:Solyc12g010350.2.1	3409118	3409256	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31236.1	mRNA:Solyc12g010650.1.1	3594905	3596211	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31234.1	mRNA:Solyc12g010600.2.1	3584244	3584332	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g063600.4.1	CUFF.8771.2	37410298	37410399	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g010080.1.1	CUFF.31203.2	3227918	3227989	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31209.1	mRNA:Solyc12g010150.2.1	3281548	3281631	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g010220.2.1	CUFF.31214.2	3340921	3340972	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31215.1	mRNA:Solyc12g010230.2.1	3342233	3342306	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31218.1	mRNA:Solyc12g010237.1.1	3353107	3356450	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g054327.1.1	CUFF.17191.3	37269556	37269742	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17185.2	mRNA:Solyc06g054313.1.1	37242883	37242963	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g054313.1.1	CUFF.17185.3	37243365	37243706	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g054313.1.1	CUFF.17185.4	37244483	37244934	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g054317.1.1	CUFF.17186.2	37248546	37248599	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17180.1	mRNA:Solyc06g054220.2.1	37156419	37156569	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17179.2	mRNA:Solyc06g054145.1.1	37058964	37059670	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27331.2	mRNA:Solyc10g047540.2.1	41020864	41021013	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27328.2	mRNA:Solyc10g047500.2.1	40924957	40925038	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17210.3	mRNA:Solyc06g054455.1.1	37340725	37340766	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g054455.1.1	CUFF.17210.5	37340561	37340701	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g044690.2.1	CUFF.27106.2	27439401	27439467	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27115.1	mRNA:Solyc10g044710.2.1	27466306	27466381	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g015730.2.1	CUFF.31419.3	5713241	5713479	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g015730.2.1	CUFF.31419.3	5715995	5716090	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g015730.2.1	CUFF.31419.3	5716306	5716394	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31419.3	CUFF.31419.2	5716125	5716246	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g015640.2.1	CUFF.31408.2	5644152	5644230	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17065.1	mRNA:Solyc06g053160.3.1	35975063	35975164	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31413.1	mRNA:Solyc12g015690.2.1	5671710	5671792	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g015690.2.1	CUFF.31413.3	5671935	5672078	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g015660.2.1	CUFF.31412.2	5655424	5655509	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g044745.1.1	mRNA:Solyc10g044750.2.1	27622000	27622081	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31451.1	mRNA:Solyc12g017250.2.1	6438755	6438860	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31459.1	mRNA:Solyc12g017290.1.1	6498425	6498485	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31452.1	mRNA:Solyc12g017260.2.1	6447450	6447531	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31446.1	mRNA:Solyc12g016220.2.1	6415737	6415821	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31440.2	mRNA:Solyc12g016210.2.1	6355393	6355475	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g026140.3.1	CUFF.14805.2	39848938	39849005	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g026140.3.1	CUFF.14805.2	39851874	39852430	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17076.1	mRNA:Solyc06g053230.3.1	36052466	36052551	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g025820.3.1	CUFF.14758.2	36961950	36962023	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g025870.3.1	CUFF.14762.2	37122218	37122411	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14773.1	mRNA:Solyc05g025920.3.1	38040120	38040518	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14769.1	CUFF.14769.3	37902973	37903188	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g025905.1.1	CUFF.14769.3	37902906	37903012	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17116.1	mRNA:Solyc06g053590.3.1	36494900	36494982	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17130.1	mRNA:Solyc06g053675.1.1	36633053	36633099	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17130.1	mRNA:Solyc06g053690.2.1	36632894	36633030	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17115.1	mRNA:Solyc06g053540.3.1	36425348	36426195	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g053510.3.1	mRNA:Solyc06g053520.3.1	36397069	36397142	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27187.2	mRNA:Solyc10g045270.2.1	32524113	32524263	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8873.2	mRNA:Solyc03g013250.3.1	47788132	47788177	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27181.2	mRNA:Solyc10g045175.1.1	31827306	31827370	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g013260.2.1	mRNA:Solyc03g013306.1.1	47781008	47781159	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27198.2	mRNA:Solyc10g045420.2.1	33323611	33324222	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27198.2	mRNA:Solyc10g045420.2.1	33324717	33324794	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27211.1	mRNA:Solyc10g045457.1.1	33935609	33935901	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8857.2	CUFF.8857.1	45954312	45954456	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8857.2	mRNA:Solyc03g013455.1.1	45955474	45955527	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8857.1	mRNA:Solyc03g013455.1.1	45955292	45955367	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g051500.3.1	CUFF.16993.2	35072688	35072766	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8882.1	mRNA:Solyc03g013170.3.1	48440228	48440390	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3276.2	mRNA:Solyc01g098240.2.1	88700876	88700986	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3278.1	mRNA:Solyc01g098250.3.1	88709420	88709694	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31358.1	mRNA:Solyc12g014040.1.1	4855810	4855869	-	1^2-,0	intron retention
SL3.0ch10	CUFF.27238.1	mRNA:Solyc10g046770.2.1	36835345	36835374	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g046770.2.1	CUFF.27238.3	36838524	36838988	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g098410.3.1	CUFF.3291.2	88810401	88810467	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3289.1	mRNA:Solyc01g098330.1.1	88761020	88761075	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3296.1	mRNA:Solyc01g098455.1.1	88850560	88851043	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3297.2	mRNA:Solyc01g098490.3.1	88868799	88868884	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3297.2	CUFF.3297.4	88869212	88869310	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g098420.2.1	CUFF.3292.3	88815106	88815191	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3294.2	mRNA:Solyc01g098440.2.1	88834213	88834316	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3302.2	mRNA:Solyc01g098610.3.1	88957741	88958054	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g098527.1.1	mRNA:Solyc01g098530.3.1	88902722	88902914	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g098570.2.1	CUFF.3301.2	88934682	88934814	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31384.2	mRNA:Solyc12g014200.2.1	5047033	5047099	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31384.2	mRNA:Solyc12g014200.2.1	5047544	5047617	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g014210.2.1	CUFF.31383.2	5054195	5054335	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3309.2	mRNA:Solyc01g098665.1.1	88979689	88979795	-	1^2-,0	intron retention
SL3.0ch12	CUFF.31382.1	mRNA:Solyc12g014190.2.1	5034170	5034310	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g014380.2.1	CUFF.31393.2	5274355	5274404	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g014360.2.1	CUFF.31392.2	5217860	5217961	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g098960.2.1	mRNA:Solyc01g098970.2.1	89201907	89201988	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31318.1	mRNA:Solyc12g013800.2.1	4594748	4596293	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g013740.2.1	mRNA:Solyc12g013733.1.1	4566216	4566291	+	1^2-,0	intron retention
SL3.0ch12	CUFF.31319.2	mRNA:Solyc12g013820.2.1	4604504	4604646	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g013870.2.1	CUFF.31328.2	4661020	4661118	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g052010.2.1	CUFF.17043.2	35767168	35767240	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g052030.3.1	CUFF.17045.2	35775634	35775703	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17032.1	mRNA:Solyc06g051900.3.1	35674657	35674807	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g078020.3.1	CUFF.8919.2	50379430	50379553	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g077925.1.1	mRNA:Solyc03g077930.3.1	49982930	49983010	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17006.2	CUFF.17006.1	35179674	35180541	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17006.2	mRNA:Solyc06g051573.1.1	35180596	35181032	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g008680.2.1	mRNA:Solyc10g008670.3.1	2743431	2743525	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29935.1	mRNA:Solyc11g045160.2.1	31771118	31771168	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g044470.2.1	CUFF.30025.2	32852571	32852662	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32607.1	mRNA:Solyc12g044400.2.1	60252446	60252558	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32609.1	mRNA:Solyc12g044410.2.1	60285577	60285632	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g044638.1.1	mRNA:Solyc11g044600.2.1	32653949	32653994	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g082810.3.1	CUFF.23420.2	65601679	65601731	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g044230.2.1	CUFF.32597.2	60070408	60070497	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32593.1	mRNA:Solyc12g044220.2.1	60038221	60038321	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32593.1	mRNA:Solyc12g044220.2.1	60037104	60037200	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7728.1	mRNA:Solyc03g007130.3.1	1722678	1722774	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g082880.3.1	CUFF.23425.2	65664693	65664782	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23425.3	CUFF.23425.2	65664315	65664539	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g082900.3.1	CUFF.23426.2	65675284	65675367	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32600.1	mRNA:Solyc12g044280.2.1	60101672	60101770	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7739.3	mRNA:Solyc03g007280.3.1	1845362	1845417	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7739.3	mRNA:Solyc03g007280.3.1	1845663	1845877	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7739.1	mRNA:Solyc03g007280.3.1	1846010	1846071	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g009330.3.1	CUFF.26447.2	3396094	3396437	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g009330.3.1	mRNA:Solyc10g009345.1.1	3399841	3400082	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29981.1	mRNA:Solyc11g044900.2.1	32288885	32288965	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g044190.2.1	CUFF.32591.2	59928558	59928645	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26449.3	mRNA:Solyc10g009350.3.1	3403307	3403407	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g009350.3.1	CUFF.26449.2	3403800	3403878	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g043150.2.1	CUFF.32588.1	59811631	59811721	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7747.1	CUFF.7747.4	1937735	1937779	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7747.1	mRNA:Solyc03g007400.2.1	1944783	1944890	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g007320.3.1	mRNA:Solyc03g007310.3.1	1876758	1876922	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7741.3	CUFF.7741.4	1902498	1902616	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g006740.2.1	CUFF.7705.2	1290831	1290883	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7705.3	mRNA:Solyc03g006760.3.1	1291544	1291760	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32557.2	mRNA:Solyc12g042880.2.1	59268649	59268702	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g006730.2.1	CUFF.7704.2	1284807	1284886	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7706.1	mRNA:Solyc03g006780.2.1	1310186	1310249	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23389.1	mRNA:Solyc08g082460.3.1	65381792	65381983	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g006850.3.1	CUFF.7711.2	1363844	1363867	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23390.1	mRNA:Solyc08g082517.1.1	65404424	65404472	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g006960.3.1	CUFF.7722.2	1520683	1521310	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32544.1	mRNA:Solyc12g042690.2.1	58963101	58963200	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32544.1	mRNA:Solyc12g042655.1.1	58963101	58963191	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32549.2	mRNA:Solyc12g042800.2.1	59159037	59159149	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23414.1	mRNA:Solyc08g082750.3.1	65565972	65566069	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23414.1	mRNA:Solyc08g082750.3.1	65568494	65568576	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g009040.3.1	CUFF.26417.2	3051266	3051358	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g008990.3.1	CUFF.26409.2	3011847	3011989	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g008990.3.1	CUFF.26409.3	3013868	3013961	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23361.1	mRNA:Solyc08g082210.3.1	65176441	65176517	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7698.2	mRNA:Solyc03g006590.3.1	1175173	1175279	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7695.1	mRNA:Solyc03g006560.3.1	1129514	1129584	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7695.1	mRNA:Solyc03g006565.1.1	1129937	1130581	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23373.2	CUFF.23373.4	65306191	65306284	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26400.1	mRNA:Solyc10g008830.2.1	2881330	2881407	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23435.1	mRNA:Solyc08g083030.3.1	65739696	65739780	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20609.1	mRNA:Solyc07g062170.2.1	65105766	65105969	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20617.1	mRNA:Solyc07g062250.3.1	65166760	65166990	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g042800.2.1	CUFF.30090.2	34503056	34503148	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g056660.3.1	CUFF.20568.2	64599204	64599249	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30076.1	mRNA:Solyc11g043110.2.1	33800619	33800688	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26374.1	CUFF.26374.2	2618675	2619604	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26374.2	mRNA:Solyc10g008515.1.1	2617907	2618634	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30075.1	mRNA:Solyc11g043130.2.1	33753108	33753152	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32663.1	mRNA:Solyc12g044950.2.1	61237134	61237202	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g008460.3.1	CUFF.26367.2	2575687	2575784	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7674.1	mRNA:Solyc03g006350.3.1	943563	943644	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g042920.2.1	CUFF.30081.2	34219300	34219956	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7648.1	mRNA:Solyc03g006100.3.1	765480	765566	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7656.1	mRNA:Solyc03g006173.1.1	827624	828854	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g006200.2.1	CUFF.7658.2	834492	834526	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g043010.1.1	CUFF.30078.2	34088235	34088292	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26379.1	mRNA:Solyc10g008570.3.1	2670380	2670468	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7660.2	CUFF.7660.3	891561	891652	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7640.1	mRNA:Solyc03g006030.3.1	712202	712508	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18472.3	CUFF.18472.1	204907	206390	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18472.3	mRNA:Solyc07g005215.1.1	209773	210103	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18472.3	mRNA:Solyc07g005230.2.1	206792	206898	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18472.2	mRNA:Solyc07g005230.2.1	207618	208048	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18474.1	mRNA:Solyc07g005240.3.1	218636	218726	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18474.1	CUFF.18474.3	216322	216408	-	1^2-,0	intron retention
SL3.0ch07	CUFF.18476.1	CUFF.18476.2	230733	230945	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g006080.3.1	CUFF.7646.2	760617	760687	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26338.1	mRNA:Solyc10g008070.3.1	2210312	2210472	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26343.1	mRNA:Solyc10g008080.2.1	2215901	2215974	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30038.2	CUFF.30038.1	33174329	33175265	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30038.2	mRNA:Solyc11g044330.2.1	33177309	33177380	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30038.1	CUFF.30038.4	33177109	33177200	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g044330.2.1	CUFF.30038.4	33177109	33177198	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30037.2	mRNA:Solyc11g044340.2.1	33163274	33163374	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32643.1	mRNA:Solyc12g044733.1.1	60918062	60918128	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26337.1	mRNA:Solyc10g008050.2.1	2194537	2194626	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g005310.2.1	mRNA:Solyc07g005320.3.1	247138	247217	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g044860.2.1	CUFF.32655.2	61145753	61145838	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g044880.2.1	CUFF.32656.2	61184372	61184416	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g044890.2.1	mRNA:Solyc12g044895.1.1	61185338	61185505	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g008220.3.1	CUFF.26356.2	2325540	2325766	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g008220.3.1	CUFF.26356.2	2328036	2328124	+	1^2-,0	intron retention
SL3.0ch07	CUFF.18470.1	mRNA:Solyc07g005140.3.1	163722	163858	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23451.1	mRNA:Solyc08g083400.3.1	65981823	65981946	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23442.1	mRNA:Solyc08g083230.2.1	65874950	65875006	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g083290.3.1	CUFF.23446.2	65913191	65913454	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g083290.3.1	CUFF.23446.3	65921911	65922005	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g073700.3.1	CUFF.2499.2	80956308	80956467	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2490.1	mRNA:Solyc01g081600.3.1	80646789	80647406	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2448.2	mRNA:Solyc01g081170.2.1	80325867	80325978	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g028315.1.1	mRNA:Solyc11g028330.2.1	21344704	21344769	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g041950.2.1	CUFF.32470.2	56494227	56494321	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32473.2	mRNA:Solyc12g041960.2.1	56634125	56634218	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g081460.3.1	CUFF.2477.2	80527019	80527095	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2481.1	mRNA:Solyc01g081510.3.1	80563906	80563981	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2465.1	mRNA:Solyc01g081420.2.1	80485378	80485466	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2465.1	CUFF.2465.4	80485378	80485467	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2463.2	mRNA:Solyc01g081410.3.1	80466792	80466872	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7588.1	mRNA:Solyc03g005080.3.1	56565	56763	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7588.1	mRNA:Solyc03g005080.3.1	54832	54917	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7588.1	mRNA:Solyc03g005090.3.1	67848	67942	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7591.1	mRNA:Solyc03g005130.2.1	84296	84627	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23270.1	mRNA:Solyc08g080960.3.1	64209799	64209883	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7593.1	mRNA:Solyc03g005160.3.1	96989	97065	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23274.1	mRNA:Solyc08g081050.3.1	64288529	64288862	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23286.1	mRNA:Solyc08g081150.3.1	64347808	64347907	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23288.1	mRNA:Solyc08g081195.1.1	64385526	64385831	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23289.1	mRNA:Solyc08g081210.3.1	64390616	64390697	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23293.2	mRNA:Solyc08g081250.3.1	64428793	64428884	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23293.2	mRNA:Solyc08g081250.3.1	64427104	64427204	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32448.1	mRNA:Solyc12g040810.2.1	56268890	56268969	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g040800.2.1	CUFF.32447.2	56264615	56264701	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g005533.1.1	mRNA:Solyc03g005550.3.1	408173	408881	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g041870.2.1	CUFF.32460.2	56414560	56414580	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32462.1	mRNA:Solyc12g041890.2.1	56430027	56430084	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7619.1	mRNA:Solyc03g005650.1.1	466967	467054	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32442.1	mRNA:Solyc12g040740.2.1	55961994	55962988	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32440.2	mRNA:Solyc12g040695.1.1	55788952	55789408	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32440.2	mRNA:Solyc12g040695.1.1	55786103	55786827	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23254.2	mRNA:Solyc08g080590.3.1	63966044	63966562	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23254.2	mRNA:Solyc08g080585.1.1	63966351	63966629	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23260.1	mRNA:Solyc08g080720.2.1	64055357	64055499	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23261.2	mRNA:Solyc08g080745.1.1	64071985	64072064	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g080870.3.1	CUFF.23265.2	64173893	64173969	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g082980.2.1	CUFF.13432.2	66532568	66532812	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13432.3	CUFF.13432.2	66539615	66539719	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2563.2	mRNA:Solyc01g086995.1.1	81804077	81804555	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29818.3	CUFF.29818.1	25165699	25167026	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29818.3	mRNA:Solyc11g032130.2.1	25155042	25155291	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29818.2	mRNA:Solyc11g032130.2.1	25155484	25155562	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13360.1	mRNA:Solyc04g081955.1.1	65875874	65875950	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13363.1	mRNA:Solyc04g081980.2.1	65889478	65890244	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g073930.3.1	CUFF.2516.2	81155921	81156021	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29817.1	mRNA:Solyc11g032120.2.1	25140164	25141432	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g081730.3.1	CUFF.13352.2	65751097	65752389	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g032220.2.1	CUFF.29823.2	26136014	26136130	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13344.1	mRNA:Solyc04g081630.2.1	65682129	65682225	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13346.1	mRNA:Solyc04g081690.2.1	65706664	65706755	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2527.1	mRNA:Solyc01g086730.3.1	81560993	81561159	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2537.3	mRNA:Solyc01g086890.3.1	81690490	81690572	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2537.2	mRNA:Solyc01g086890.3.1	81689476	81690408	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2544.1	mRNA:Solyc01g086953.1.1	81729687	81729714	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32492.1	mRNA:Solyc12g042117.1.1	58080847	58080950	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29850.1	mRNA:Solyc11g045530.2.1	30530535	30530612	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29851.1	mRNA:Solyc11g045523.1.1	30601849	30601861	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23349.1	mRNA:Solyc08g082050.2.1	65084172	65084196	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32495.1	mRNA:Solyc12g042170.2.1	58133581	58133729	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g082280.3.1	mRNA:Solyc04g082290.3.1	66087817	66087924	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23352.1	mRNA:Solyc08g082120.2.1	65126930	65127015	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g042200.2.1	CUFF.32505.2	58185692	58186519	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13366.1	mRNA:Solyc04g082070.3.1	65947580	65947620	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29880.1	mRNA:Solyc11g045460.2.1	30669559	30669609	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23333.1	CUFF.23333.4	64924773	64924815	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g081880.2.1	CUFF.23333.4	64924966	64925008	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g081890.3.1	CUFF.23334.2	64933064	64933155	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g081890.3.1	CUFF.23334.2	64929065	64929345	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g045480.2.1	CUFF.29870.3	30653150	30653197	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g045480.2.1	mRNA:Solyc11g045470.1.1	30652984	30653033	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29867.1	mRNA:Solyc11g045510.2.1	30620466	30620542	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g082610.3.1	CUFF.13401.2	66322186	66323178	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g045260.1.1	CUFF.29912.2	31528237	31528408	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13403.1	mRNA:Solyc04g082670.3.1	66362049	66362189	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29892.1	mRNA:Solyc11g045350.2.1	30984258	30984367	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29892.1	mRNA:Solyc11g045350.2.1	30977705	30977726	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32539.1	mRNA:Solyc12g042550.2.1	58828722	58828792	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32547.1	mRNA:Solyc12g042715.1.1	59083996	59084208	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23304.3	mRNA:Solyc08g081400.3.1	64592472	64592641	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g081840.3.1	CUFF.23331.2	64915364	64915462	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g081840.3.1	mRNA:Solyc08g081845.1.1	64911441	64911574	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23331.2	mRNA:Solyc08g081845.1.1	64911713	64913296	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23326.2	mRNA:Solyc08g081760.2.1	64847602	64847705	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g081820.3.1	CUFF.23329.2	64883933	64884348	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32486.1	mRNA:Solyc12g042070.2.1	58026145	58026515	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32486.1	mRNA:Solyc12g042073.1.1	58026829	58027059	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32486.1	mRNA:Solyc12g042075.1.1	58028790	58028855	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23316.2	mRNA:Solyc08g081530.3.1	64677705	64677797	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23321.1	mRNA:Solyc08g081660.2.1	64763171	64763352	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32488.1	mRNA:Solyc12g042100.2.1	58065132	58065257	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11562.1	mRNA:Solyc04g026271.1.1	17536039	17536065	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12400.2	mRNA:Solyc04g055010.3.1	53480656	53480776	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12404.2	mRNA:Solyc04g055030.2.1	53487145	53487224	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12405.1	mRNA:Solyc04g055060.2.1	53573087	53573172	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12419.2	mRNA:Solyc04g056320.2.1	54006827	54006865	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12421.1	mRNA:Solyc04g056340.3.1	54030014	54030045	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12410.2	CUFF.12410.1	53802782	53802852	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12410.2	mRNA:Solyc04g055230.2.1	53802217	53802709	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2369.1	CUFF.2369.4	79400386	79401187	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32911.1	mRNA:Solyc12g087970.2.1	64453957	64454060	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2347.2	mRNA:Solyc01g080030.2.1	79009929	79010009	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2352.1	mRNA:Solyc01g080070.3.1	79076997	79077112	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32904.2	mRNA:Solyc12g087893.1.1	64375378	64375770	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32900.1	mRNA:Solyc12g087860.2.1	64341567	64341682	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2336.2	mRNA:Solyc01g079870.3.1	78864061	78864146	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32879.1	mRNA:Solyc12g056980.1.1	64012445	64012536	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32881.1	CUFF.32881.2	64031988	64032114	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32881.2	CUFF.32881.4	64033851	64033942	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32867.1	CUFF.32867.2	63898549	63898744	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32867.2	mRNA:Solyc12g056880.2.1	63904318	63904407	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g054820.3.1	CUFF.12389.2	53230643	53230754	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g054830.3.1	CUFF.12393.2	53240954	53241051	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11494.2	mRNA:Solyc04g039790.2.1	12545185	12545274	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g039770.2.1	mRNA:Solyc04g039780.1.1	12547114	12547156	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g054445.1.1	mRNA:Solyc04g054450.1.1	52474255	52474826	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g054480.3.1	CUFF.12360.2	52528470	52529563	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g080470.3.1	mRNA:Solyc01g080480.3.1	79562340	79562350	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2387.2	mRNA:Solyc01g080550.2.1	79646608	79646677	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g040160.3.1	CUFF.11465.2	11977210	11977305	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g027981.1.1	CUFF.29684.2	19927745	19927768	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2383.1	mRNA:Solyc01g080415.1.1	79510964	79511662	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2382.2	mRNA:Solyc01g080410.3.1	79509378	79509454	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2381.1	mRNA:Solyc01g080400.3.1	79501575	79501604	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g027880.2.1	mRNA:Solyc11g027883.1.1	19232496	19232556	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11491.1	mRNA:Solyc04g039810.1.1	12540643	12540807	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11489.1	mRNA:Solyc04g039830.2.1	12537881	12537947	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11489.1	mRNA:Solyc04g039820.2.1	12539097	12539126	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g039820.2.1	CUFF.11489.4	12538830	12538876	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g039950.3.1	CUFF.11478.3	12369911	12369993	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g039945.1.1	CUFF.11480.3	12375495	12375578	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11480.2	CUFF.11480.3	12375101	12375410	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32967.2	CUFF.32967.1	65214933	65215177	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g081080.2.1	CUFF.2437.1	80281510	80281591	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g081110.3.1	mRNA:Solyc01g081100.2.1	80292233	80292423	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g088690.2.1	CUFF.32951.2	64947542	64947653	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32958.1	mRNA:Solyc12g088890.2.1	65069483	65071492	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32961.2	mRNA:Solyc12g088940.2.1	65108570	65108664	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2424.1	mRNA:Solyc01g081040.3.1	80207651	80207766	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g089010.2.1	CUFF.32963.2	65160600	65160651	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g080970.3.1	CUFF.2419.2	80160207	80160279	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g088620.1.1	mRNA:Solyc12g088613.1.1	64879938	64880030	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32947.1	mRNA:Solyc12g088617.1.1	64890572	64890697	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11438.1	mRNA:Solyc04g018080.3.1	9492537	9493292	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2188.1	mRNA:Solyc01g067980.1.1	76838783	76838824	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7818.1	mRNA:Solyc03g025510.3.1	2929070	2929162	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g049530.2.1	CUFF.32712.2	62114223	62114498	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32712.2	mRNA:Solyc12g049540.2.1	62114800	62115131	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32711.2	CUFF.32711.4	62095997	62096130	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32707.2	CUFF.32707.1	62035635	62036334	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32707.2	mRNA:Solyc12g049480.2.1	62035211	62035589	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32704.3	CUFF.32704.5	62012178	62012319	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2162.2	mRNA:Solyc01g067570.3.1	76193717	76194158	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2163.3	CUFF.2163.2	76260932	76261056	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2164.1	mRNA:Solyc01g067620.3.1	76265771	76265868	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7827.1	mRNA:Solyc03g025585.1.1	3014057	3014200	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7827.1	mRNA:Solyc03g025585.1.1	3014554	3015220	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7825.1	mRNA:Solyc03g025570.2.1	2990709	2991041	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32695.1	mRNA:Solyc12g049270.2.1	61704165	61704255	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7846.1	mRNA:Solyc03g025880.3.1	3303251	3303328	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2154.1	mRNA:Solyc01g067440.3.1	75930834	75930901	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2150.1	mRNA:Solyc01g067390.3.1	75685679	75685728	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g067410.2.1	CUFF.2153.3	75774495	75774650	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g025820.2.1	CUFF.7842.2	3238616	3238712	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32687.1	mRNA:Solyc12g049220.2.1	61565766	61565840	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32686.2	mRNA:Solyc12g049200.1.1	61551993	61552059	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32688.2	mRNA:Solyc12g049230.2.1	61578826	61578962	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g025795.1.1	mRNA:Solyc03g025800.3.1	3226893	3227087	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2157.1	mRNA:Solyc01g067510.3.1	76052988	76053068	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2157.1	mRNA:Solyc01g067510.3.1	76054620	76054703	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g025935.1.1	CUFF.7860.2	3393758	3393799	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g025937.1.1	CUFF.7861.3	3396197	3396293	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g025925.1.1	CUFF.7851.4	3369875	3369950	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7847.1	mRNA:Solyc03g025890.2.1	3329288	3329367	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2171.2	mRNA:Solyc01g067720.3.1	76471133	76471428	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32709.2	mRNA:Solyc12g049483.1.1	62077219	62077294	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g049570.2.1	CUFF.32715.2	62154071	62154211	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g049570.2.1	CUFF.32715.2	62146193	62146372	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g049570.2.1	mRNA:Solyc12g049580.2.1	62161138	62161304	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11653.1	mRNA:Solyc04g025730.1.1	21200991	21201643	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g068580.3.1	CUFF.2251.2	77598810	77598900	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g079340.3.1	mRNA:Solyc01g079345.1.1	78301325	78301346	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2289.1	mRNA:Solyc01g079360.3.1	78310819	78310901	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2281.2	mRNA:Solyc01g079250.3.1	78202040	78202138	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2281.2	CUFF.2281.3	78202040	78202139	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2285.1	mRNA:Solyc01g079300.3.1	78240697	78240935	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32833.1	mRNA:Solyc12g056560.2.1	63457146	63457654	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2300.1	mRNA:Solyc01g079390.3.1	78334303	78334424	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2300.1	mRNA:Solyc01g079390.3.1	78338956	78339030	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g056650.2.1	CUFF.32849.2	63581142	63581839	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g055940.2.1	CUFF.32785.2	62880859	62880993	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g007510.3.1	CUFF.7751.3	2086856	2086898	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7751.2	CUFF.7751.3	2086359	2086480	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g007530.3.1	CUFF.7753.2	2111740	2112052	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7756.1	mRNA:Solyc03g007560.2.1	2122749	2122823	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2241.1	mRNA:Solyc01g068475.1.1	77527075	77527130	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7749.1	mRNA:Solyc03g007460.2.1	2015114	2015259	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7792.1	mRNA:Solyc03g025100.1.1	2601637	2601717	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g056280.2.1	CUFF.32800.2	63181430	63182697	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7784.2	mRNA:Solyc03g007970.2.1	2462836	2462913	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32819.1	mRNA:Solyc12g056510.2.1	63397869	63397993	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g025860.1.1	CUFF.11625.2	20753204	20753261	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7803.1	mRNA:Solyc03g025255.1.1	2725378	2725718	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11577.2	mRNA:Solyc04g026227.1.1	18213428	18213499	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11577.1	mRNA:Solyc04g026223.1.1	18219780	18219813	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g026230.1.1	CUFF.11578.2	18190414	18190529	+	1^2-,0	intron retention
SL3.0ch02	CUFF.4640.2	mRNA:Solyc02g005510.3.1	9452030	9452108	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g005310.2.1	CUFF.4581.4	8052042	8052152	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g005320.2.1	CUFF.4581.4	8052090	8052152	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11279.1	mRNA:Solyc04g015150.3.1	5323237	5323262	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11265.1	mRNA:Solyc04g014993.1.1	5193747	5194129	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12157.1	mRNA:Solyc04g050410.2.1	46951265	46951317	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12158.1	mRNA:Solyc04g050417.1.1	46997571	46997655	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g050220.2.1	CUFF.12117.2	46182069	46182443	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g014640.1.1	CUFF.11233.2	4908740	4908899	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g014650.3.1	mRNA:Solyc04g014655.1.1	4919269	4919359	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g014900.3.1	CUFF.11255.2	5146797	5146905	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g014870.3.1	mRNA:Solyc04g014875.1.1	5123466	5123558	+	1^2-,0	intron retention
SL3.0ch02	CUFF.4664.1	mRNA:Solyc02g011800.1.1	14139909	14139969	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11259.2	mRNA:Solyc04g014950.3.1	5178567	5178622	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11259.3	mRNA:Solyc04g014960.3.1	5180455	5180953	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11262.1	mRNA:Solyc04g014970.2.1	5189024	5189106	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g011680.3.1	CUFF.4652.2	13777049	13777167	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g076440.3.1	CUFF.22947.2	60570733	60570828	+	1^2-,0	intron retention
SL3.0ch02	CUFF.4513.2	CUFF.4513.1	4946469	4946498	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g012150.3.1	mRNA:Solyc04g012155.1.1	4438774	4438857	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g012090.2.1	CUFF.11183.3	4406550	4406607	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g012090.2.1	CUFF.11183.2	4410516	4410573	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g012110.2.1	CUFF.11185.2	4418665	4418716	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g012160.3.1	CUFF.11189.2	4449711	4450050	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g014270.3.1	mRNA:Solyc04g014275.1.1	4586351	4586585	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11201.2	CUFF.11201.1	4647713	4647816	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11209.1	mRNA:Solyc04g014460.3.1	4692018	4692602	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12223.1	mRNA:Solyc04g051100.3.1	49579148	49579491	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12224.1	mRNA:Solyc04g051103.1.1	49596171	49596477	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g076200.3.1	CUFF.22932.1	60345468	60345748	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11225.1	mRNA:Solyc04g014560.3.1	4831860	4832269	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11221.2	mRNA:Solyc04g014540.2.1	4815624	4815703	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11221.2	mRNA:Solyc04g014540.2.1	4815765	4815841	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11221.2	CUFF.11221.3	4815720	4815762	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12199.1	CUFF.12199.2	48188076	48188184	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12199.2	mRNA:Solyc04g050760.3.1	48188377	48188466	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g050780.2.1	CUFF.12201.2	48196226	48196288	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22918.2	mRNA:Solyc08g075990.3.1	60180526	60180659	-	1^2-,0	intron retention
SL3.0ch02	CUFF.4555.1	mRNA:Solyc02g005180.3.1	7348968	7349034	+	1^2-,0	intron retention
SL3.0ch02	CUFF.4555.1	CUFF.4555.3	7350415	7350514	+	1^2-,0	intron retention
SL3.0ch02	CUFF.4555.1	CUFF.4555.4	7351886	7351972	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12207.3	mRNA:Solyc04g050850.2.1	48663108	48663154	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22911.1	mRNA:Solyc08g075890.3.1	60099572	60099645	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22911.1	mRNA:Solyc08g075890.3.1	60101798	60101876	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12218.2	mRNA:Solyc04g051025.1.1	49264422	49265248	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12218.1	mRNA:Solyc04g051025.1.1	49262726	49264399	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g050940.2.1	CUFF.12215.2	48943315	48943399	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12167.1	mRNA:Solyc04g050470.3.1	47219597	47219722	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g050470.3.1	CUFF.12167.3	47213397	47213478	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22892.2	mRNA:Solyc08g075630.3.1	59888316	59888425	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g075610.2.1	CUFF.22890.2	59876457	59876542	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22894.1	mRNA:Solyc08g075650.3.1	59921201	59921295	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22894.1	mRNA:Solyc08g075670.2.1	59922307	59922387	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g075700.3.1	mRNA:Solyc08g075705.1.1	59946761	59946775	-	1^2-,0	intron retention
SL3.0ch02	CUFF.4519.1	mRNA:Solyc02g050290.1.1	4965651	4966181	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22889.1	mRNA:Solyc08g075560.1.1	59849015	59849080	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22887.1	mRNA:Solyc08g075550.3.1	59836568	59836671	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g050550.2.1	CUFF.12182.3	47520248	47520290	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12182.2	CUFF.12182.3	47522565	47524086	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12182.2	mRNA:Solyc04g050565.1.1	47528847	47528941	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12187.1	mRNA:Solyc04g050621.1.1	47674675	47674695	+	1^2-,0	intron retention
SL3.0ch02	CUFF.4546.1	mRNA:Solyc02g005100.2.1	6547305	6547478	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g075710.3.1	CUFF.22897.2	59963921	59964208	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g016160.3.1	mRNA:Solyc04g016180.3.1	6916008	6916093	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20909.1	mRNA:Solyc07g066600.3.1	68115512	68115579	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12225.2	mRNA:Solyc04g051125.1.1	49650969	49650992	+	1^2-,0	intron retention
SL3.0ch02	CUFF.4773.1	mRNA:Solyc02g014840.3.1	19145910	19146822	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g065980.3.1	CUFF.20859.2	67676262	67676347	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g065980.3.1	CUFF.20859.2	67677443	67677537	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20851.2	mRNA:Solyc07g065880.3.1	67600952	67601041	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13545.1	mRNA:Solyc05g006410.3.1	1046646	1046730	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13545.1	mRNA:Solyc05g006410.3.1	1045077	1045156	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13547.1	mRNA:Solyc05g006450.2.1	1076924	1076972	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13547.1	mRNA:Solyc05g006455.1.1	1077572	1077620	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g014490.3.1	CUFF.4740.2	17123412	17123488	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13533.1	mRNA:Solyc05g006343.1.1	1002173	1002259	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g006370.1.1	CUFF.13536.1	1020216	1020418	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20873.1	mRNA:Solyc07g066180.2.1	67794398	67794476	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20874.1	mRNA:Solyc07g066190.2.1	67796163	67796196	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13530.1	mRNA:Solyc05g006310.2.1	961114	961157	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g014540.2.1	CUFF.4746.2	17505341	17505428	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g006290.1.1	CUFF.13529.2	942430	942515	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g066140.1.1	CUFF.20867.2	67773503	67773581	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20869.1	CUFF.20869.3	67785889	67785976	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20862.2	mRNA:Solyc07g066030.3.1	67704949	67704991	-	1^2-,0	intron retention
SL3.0ch02	CUFF.4734.2	mRNA:Solyc02g014430.3.1	17037212	17037295	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13505.1	mRNA:Solyc05g006000.2.1	742320	742406	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13503.2	mRNA:Solyc05g005950.3.1	719359	719441	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g006010.3.1	CUFF.13503.7	734606	734673	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13503.7	mRNA:Solyc05g005990.3.1	734961	735340	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g006090.3.1	mRNA:Solyc05g006100.3.1	823619	823705	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13500.1	mRNA:Solyc05g005910.3.1	699981	700082	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13500.1	mRNA:Solyc05g005915.1.1	701674	701776	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g051380.1.1	mRNA:Solyc04g051374.1.1	50387688	50387741	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12267.1	mRNA:Solyc04g051390.2.1	50419621	50421289	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g017620.3.1	mRNA:Solyc04g017593.1.1	7574917	7575061	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12263.2	mRNA:Solyc04g051287.1.1	50232109	50232683	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12263.1	mRNA:Solyc04g051287.1.1	50231910	50231993	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11375.2	mRNA:Solyc04g016420.3.1	7227271	7227348	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11386.1	mRNA:Solyc04g016540.2.1	7365565	7366814	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11363.1	mRNA:Solyc04g016235.1.1	7018850	7018894	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g011940.2.1	CUFF.4675.2	14175065	14175111	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g012000.1.1	CUFF.4689.2	14188870	14188953	-	1^2-,0	intron retention
SL3.0ch02	CUFF.4697.1	mRNA:Solyc02g014030.2.1	15291747	15292102	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g014130.2.1	CUFF.4706.3	15509288	15509382	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g014130.2.1	CUFF.4706.3	15501710	15501781	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12304.1	mRNA:Solyc04g051870.2.1	51112300	51112341	-	1^2-,0	intron retention
SL3.0ch02	CUFF.4719.1	mRNA:Solyc02g014190.3.1	15756447	15756488	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g014255.1.1	mRNA:Solyc02g014270.1.1	16149700	16149766	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g007020.3.1	CUFF.13589.2	1612224	1612311	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13589.3	CUFF.13589.2	1610543	1610648	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13589.3	mRNA:Solyc05g007020.3.1	1609910	1610001	-	1^2-,0	intron retention
SL3.0ch02	CUFF.4666.2	mRNA:Solyc02g011845.1.1	14145497	14145510	-	1^2-,0	intron retention
SL3.0ch02	CUFF.4666.2	mRNA:Solyc02g011850.2.1	14146326	14146362	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g011815.1.1	CUFF.4665.2	14141939	14142086	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13595.1	mRNA:Solyc05g007150.3.1	1747664	1747686	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13586.2	mRNA:Solyc05g006910.3.1	1509454	1509589	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g016080.2.1	CUFF.11348.2	6791638	6791750	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11314.2	CUFF.11314.3	6008331	6008477	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11314.3	mRNA:Solyc04g015710.3.1	6009000	6009078	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g053140.2.1	CUFF.12333.2	51692012	51692153	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11312.1	mRNA:Solyc04g015690.3.1	5978675	5978801	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11316.1	mRNA:Solyc04g015720.2.1	6014666	6014722	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11318.1	mRNA:Solyc04g015740.3.1	6029386	6029591	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11327.1	mRNA:Solyc04g015850.2.1	6219508	6219550	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g054270.3.1	CUFF.12346.2	52204596	52205637	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11296.1	mRNA:Solyc04g015440.3.1	5632036	5632120	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11299.1	mRNA:Solyc04g015560.3.1	5818425	5818486	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g064060.3.1	CUFF.20724.2	66486129	66486194	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g022890.2.1	CUFF.4927.2	24863536	24863561	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g064080.3.1	CUFF.20727.2	66502104	66502195	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30250.1	mRNA:Solyc11g056350.1.1	45626209	45626308	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g021560.3.1	CUFF.4891.2	23683345	23684090	-	1^2-,0	intron retention
SL3.0ch02	CUFF.4893.1	mRNA:Solyc02g021590.3.1	23722735	23722808	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30251.1	mRNA:Solyc11g056360.2.1	45627607	45627651	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g021470.3.1	CUFF.4879.2	23337213	23337295	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20778.1	mRNA:Solyc07g064790.3.1	66913541	66913647	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g064840.2.1	CUFF.20782.2	66968029	66968090	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g064830.3.1	CUFF.20780.2	66960624	66960740	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20770.1	mRNA:Solyc07g064700.3.1	66865274	66865357	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23170.1	mRNA:Solyc08g079120.2.1	62882677	62882801	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20766.1	mRNA:Solyc07g064650.2.1	66839997	66840118	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20768.1	mRNA:Solyc01g067810.2.1	66857164	66857220	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g064420.3.1	CUFF.20754.2	66722652	66722754	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g079000.3.1	CUFF.23154.3	62782473	62782781	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g079005.1.1	CUFF.23154.3	62782473	62782835	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23141.1	mRNA:Solyc08g078845.1.1	62665130	62666215	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20747.1	mRNA:Solyc07g064380.3.1	66693196	66693338	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20747.2	CUFF.20747.5	66694222	66694730	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20747.2	mRNA:Solyc07g064377.1.1	66697867	66697942	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g064350.2.1	CUFF.20745.2	66670016	66670383	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20743.3	CUFF.20743.2	66649902	66650043	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23126.1	mRNA:Solyc08g078680.3.1	62583111	62583181	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23125.1	mRNA:Solyc08g078670.2.1	62571250	62571437	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23132.1	mRNA:Solyc08g078753.1.1	62612847	62612919	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23132.1	mRNA:Solyc08g078753.1.1	62607015	62607112	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25381.1	mRNA:Solyc09g065780.3.1	64291742	64291816	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23120.2	mRNA:Solyc08g078580.2.1	62479162	62479249	+	1^2-,0	intron retention
SL3.0ch02	CUFF.4955.1	mRNA:Solyc02g024000.3.1	25198925	25198966	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30241.1	mRNA:Solyc11g039360.1.1	45469086	45469162	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g066120.3.1	CUFF.25419.2	64759455	64759785	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20798.1	mRNA:Solyc07g064960.2.1	67038180	67038283	-	1^2-,0	intron retention
SL3.0ch02	CUFF.4818.1	mRNA:Solyc02g020920.1.1	20832575	20832679	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20800.2	mRNA:Solyc07g065010.3.1	67082737	67082791	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g020880.2.1	CUFF.4799.2	20734704	20735585	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g079810.3.1	CUFF.23204.2	63389324	63389407	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23203.1	mRNA:Solyc08g079800.3.1	63382815	63383109	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20808.1	mRNA:Solyc07g065160.3.1	67174546	67174592	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20810.1	mRNA:Solyc07g065220.2.1	67210755	67210807	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g021000.3.1	CUFF.4827.3	21760539	21760614	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g021020.3.1	CUFF.4830.2	21793965	21794423	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11849.2	mRNA:Solyc04g024430.3.1	31224883	31224975	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20848.1	mRNA:Solyc07g065780.2.1	67541793	67541858	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23245.2	mRNA:Solyc08g080520.3.1	63922340	63922634	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23244.2	mRNA:Solyc08g080510.3.1	63906497	63906559	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g079970.1.1	CUFF.23210.3	63479281	63479343	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20822.1	CUFF.20822.4	67323445	67323611	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20822.1	CUFF.20822.6	67323647	67323721	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20819.2	mRNA:Solyc07g065400.3.1	67301504	67301582	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g080225.1.1	CUFF.23222.2	63679031	63679064	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g021340.3.1	CUFF.4870.2	22986957	22987063	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23214.1	mRNA:Solyc08g080030.3.1	63504229	63504301	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23216.1	mRNA:Solyc08g080110.3.1	63576457	63576572	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20834.2	mRNA:Solyc07g065600.3.1	67426126	67426226	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20834.2	mRNA:Solyc07g065600.3.1	67431800	67431903	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g065110.3.1	CUFF.25314.2	63209023	63209129	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g065170.2.1	CUFF.25329.2	63320703	63320778	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32399.1	mRNA:Solyc12g040320.2.1	54260554	54260640	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11917.1	mRNA:Solyc04g045630.3.1	34445382	34445471	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25363.1	mRNA:Solyc09g065570.3.1	63961015	63961085	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25360.1	mRNA:Solyc09g065540.3.1	63900911	63900990	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25372.1	mRNA:Solyc09g065650.3.1	64083122	64083212	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g045600.3.1	CUFF.11903.2	34210182	34210251	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g065600.3.1	mRNA:Solyc09g065595.1.1	63991507	63992171	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30287.1	mRNA:Solyc11g062070.2.1	49216981	49217072	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g047760.2.1	CUFF.11936.2	37449718	37449850	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g061960.2.1	CUFF.30275.2	48970275	48970363	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25336.1	mRNA:Solyc09g065290.3.1	63586860	63586892	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25347.2	mRNA:Solyc09g065383.1.1	63728841	63729108	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25348.2	CUFF.25348.3	63749028	63750627	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25352.1	mRNA:Solyc09g065457.1.1	63798862	63798954	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g031790.2.1	CUFF.5047.2	27478812	27479076	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30108.2	CUFF.30108.3	36454937	36455025	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30108.2	mRNA:Solyc11g042523.1.1	36454449	36454539	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30108.3	mRNA:Solyc11g042523.1.1	36454198	36454304	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g042460.2.1	CUFF.30115.3	36731450	36731541	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11110.1	mRNA:Solyc04g010040.3.1	3350457	3350560	+	1^2-,0	intron retention
SL3.0ch02	CUFF.5073.1	mRNA:Solyc02g032120.3.1	28085385	28086084	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g040260.2.1	CUFF.30154.2	38328731	38328951	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23034.1	mRNA:Solyc08g077470.3.1	61516790	61516962	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20650.1	mRNA:Solyc07g062680.2.1	65500268	65500387	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g077370.3.1	mRNA:Solyc08g077380.3.1	61371253	61371389	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g077380.3.1	CUFF.23022.3	61377268	61377329	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g077340.2.1	mRNA:Solyc08g077335.1.1	61352373	61352379	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20634.1	mRNA:Solyc07g062580.3.1	65394015	65394175	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g077310.3.1	CUFF.23013.2	61330080	61330280	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g077310.3.1	CUFF.23013.2	61330765	61330877	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11120.1	mRNA:Solyc04g010135.1.1	3429514	3430041	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22970.3	mRNA:Solyc08g076810.3.1	60852866	60852954	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20675.1	mRNA:Solyc07g063060.2.1	65772796	65772848	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22966.2	mRNA:Solyc08g076690.2.1	60755719	60755828	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g063000.3.1	CUFF.20672.3	65739712	65739778	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g010060.2.1	mRNA:Solyc04g010055.1.1	3358708	3359783	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g076885.1.1	mRNA:Solyc08g076890.3.1	60942726	60943133	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g076910.3.1	CUFF.22982.2	60952027	60952151	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20667.1	mRNA:Solyc07g062940.3.1	65697575	65697659	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22957.1	mRNA:Solyc08g076590.3.1	60664334	60665381	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22956.1	mRNA:Solyc08g076570.3.1	60657413	60657500	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20663.1	mRNA:Solyc07g062890.3.1	65652930	65653666	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g076680.2.1	CUFF.22964.2	60730954	60731043	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20657.2	mRNA:Solyc07g062750.3.1	65575990	65576073	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22996.1	mRNA:Solyc08g077110.3.1	61156371	61156399	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23006.2	mRNA:Solyc08g077250.3.1	61299358	61299431	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23003.1	mRNA:Solyc08g077220.3.1	61256511	61256600	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22983.1	mRNA:Solyc08g076950.3.1	61008240	61010085	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g049135.1.1	CUFF.11976.2	39729950	39730390	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11164.1	mRNA:Solyc04g011640.3.1	4104904	4105625	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11157.1	mRNA:Solyc04g011610.2.1	4049945	4050325	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11157.1	CUFF.11157.3	4049522	4049878	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g011480.3.1	mRNA:Solyc04g011490.3.1	3921578	3921613	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g049355.1.1	CUFF.12015.2	41558599	41559026	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12015.2	mRNA:Solyc04g049360.3.1	41560647	41561057	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11133.1	mRNA:Solyc04g010310.3.1	3638887	3639020	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g049226.1.1	CUFF.11997.4	40960852	40962307	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11997.1	mRNA:Solyc04g049224.1.1	40955746	40955791	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g010180.3.1	CUFF.11122.2	3503726	3503823	+	1^2-,0	intron retention
SL3.0ch11	CUFF.30189.1	mRNA:Solyc11g039970.1.1	40541463	40541507	-	1^2-,0	intron retention
SL3.0ch11	CUFF.30176.1	mRNA:Solyc11g040150.2.1	40019485	40019568	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g030450.3.1	CUFF.5008.2	26362010	26362087	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g039880.2.1	CUFF.30196.2	41792871	41792964	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20680.1	mRNA:Solyc07g063120.3.1	65822320	65822396	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g063220.3.1	CUFF.20690.2	65878248	65878417	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g063340.3.1	CUFF.20696.2	65963530	65963618	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g078130.3.1	CUFF.23076.2	62088160	62088294	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20699.1	mRNA:Solyc07g063370.2.1	65983729	65983791	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20700.2	mRNA:Solyc07g063390.3.1	65993718	65993794	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g063450.2.1	CUFF.20702.3	66065119	66065515	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20703.1	mRNA:Solyc07g063460.2.1	66071238	66071313	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g063475.1.1	mRNA:Solyc07g063480.3.1	66094621	66094681	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23092.2	mRNA:Solyc08g078330.3.1	62264889	62265081	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g063510.3.1	CUFF.20705.2	66112619	66113030	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20713.1	mRNA:Solyc07g063710.2.1	66228931	66229000	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23096.2	mRNA:Solyc08g078370.3.1	62319674	62319766	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23046.1	mRNA:Solyc08g077670.2.1	61700689	61700743	-	1^2-,0	intron retention
SL3.0ch08	CUFF.23047.2	mRNA:Solyc08g077685.1.1	61722115	61722239	+	1^2-,0	intron retention
SL3.0ch08	CUFF.23051.1	mRNA:Solyc08g077800.3.1	61832107	61832186	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g049470.2.1	CUFF.12028.2	41952877	41953000	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12029.1	mRNA:Solyc04g049490.3.1	42047674	42047697	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11074.2	mRNA:Solyc04g009620.3.1	3004553	3004637	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11073.1	CUFF.11073.2	2996588	2997452	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g049803.1.1	CUFF.12074.2	43524369	43524427	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12088.1	mRNA:Solyc04g049940.2.1	44825186	44825659	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11062.2	mRNA:Solyc04g009490.1.1	2909669	2910150	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13968.1	mRNA:Solyc05g013100.1.1	6188730	6188782	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13958.1	mRNA:Solyc05g012850.2.1	5998114	5998189	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g012690.3.1	CUFF.13950.2	5886171	5886254	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g012710.3.1	mRNA:Solyc05g012720.3.1	5904944	5905022	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g013280.3.1	mRNA:Solyc05g013285.1.1	6387078	6387411	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g013330.3.1	CUFF.13987.2	6419917	6420113	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13882.1	mRNA:Solyc05g012180.3.1	5447349	5447423	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13901.1	mRNA:Solyc05g012250.2.1	5541456	5541510	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13908.1	mRNA:Solyc05g012330.3.1	5592234	5592245	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13908.1	mRNA:Solyc05g012330.3.1	5582401	5582412	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13903.1	mRNA:Solyc05g012253.1.1	5544299	5544311	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g012215.1.1	mRNA:Solyc05g012220.3.1	5498632	5498766	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g011840.3.1	CUFF.13861.3	5075647	5075744	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g011840.3.1	CUFF.13861.4	5075344	5075406	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g082110.3.1	CUFF.25655.2	68376945	68377026	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13870.1	mRNA:Solyc05g011990.3.1	5198274	5198359	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25667.2	mRNA:Solyc09g082300.3.1	68496786	68496895	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g082240.3.1	CUFF.25665.2	68475681	68475978	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13878.1	mRNA:Solyc05g012110.3.1	5318822	5318914	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13843.2	mRNA:Solyc05g010650.3.1	4863425	4863520	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13851.1	mRNA:Solyc05g010770.3.1	4973630	4973698	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13853.1	mRNA:Solyc05g010775.1.1	4975302	4975387	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13852.2	CUFF.13852.1	4978896	4979176	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25612.1	mRNA:Solyc09g075720.3.1	67764670	67764750	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25637.1	mRNA:Solyc09g075880.3.1	67948255	67948332	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25500.1	mRNA:Solyc09g074080.2.1	66188764	66188855	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25490.2	mRNA:Solyc09g072960.1.1	66058259	66058515	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25488.1	mRNA:Solyc09g072920.1.1	66029580	66029648	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g014390.3.1	CUFF.14095.2	8240088	8240256	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25482.2	mRNA:Solyc09g072885.1.1	65987023	65987086	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25478.2	CUFF.25478.1	65963235	65963326	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25477.1	mRNA:Solyc09g072820.3.1	65935783	65938498	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25477.1	mRNA:Solyc09g072817.1.1	65939043	65939422	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25475.1	mRNA:Solyc09g072750.2.1	65806406	65806459	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25468.2	CUFF.25468.3	65745729	65745776	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g072587.1.1	CUFF.25452.2	65607564	65607717	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g072587.1.1	CUFF.25452.2	65608825	65609030	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25444.2	mRNA:Solyc09g072580.3.1	65535992	65536086	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25432.2	mRNA:Solyc09g066450.2.1	65098675	65098721	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g013490.3.1	CUFF.14001.3	6716500	6716652	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g074730.2.1	CUFF.25553.2	66974376	66974423	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g074330.3.1	CUFF.25515.1	66534045	66534340	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14022.2	mRNA:Solyc05g013710.3.1	7010698	7010819	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25507.1	mRNA:Solyc09g074235.1.1	66436515	66436961	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25523.1	mRNA:Solyc09g074460.2.1	66685440	66685690	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g013890.2.1	CUFF.14050.2	7343082	7343167	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g074095.1.1	CUFF.25501.2	66201179	66201459	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14059.2	mRNA:Solyc05g014100.2.1	7797891	7798858	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14059.1	mRNA:Solyc05g014110.3.1	7799366	7799995	+	1^2-,0	intron retention
SL3.0ch05	CUFF.14058.2	mRNA:Solyc05g014030.3.1	7535031	7535127	-	1^2-,0	intron retention
SL3.0ch05	CUFF.14073.1	CUFF.14073.2	7905991	7906411	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13664.1	mRNA:Solyc05g008220.3.1	2615227	2615333	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13721.1	mRNA:Solyc05g008895.1.1	3109468	3109490	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13711.1	mRNA:Solyc05g008790.3.1	3028244	3028322	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13711.1	CUFF.13711.2	3028939	3030080	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13714.1	mRNA:Solyc05g008815.1.1	3043317	3043422	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13713.3	mRNA:Solyc05g008805.1.1	3037606	3037816	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13707.3	mRNA:Solyc05g008770.3.1	2994239	2994353	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13707.3	CUFF.13707.2	2993390	2993455	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13703.1	mRNA:Solyc05g008720.1.1	2984010	2984112	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13704.1	mRNA:Solyc05g008740.1.1	2986903	2987279	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g008350.3.1	CUFF.13672.2	2717086	2717228	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g089865.1.1	CUFF.25794.2	69966426	69966618	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25826.1	mRNA:Solyc09g090460.3.1	70450254	70450332	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25808.2	CUFF.25808.1	70253607	70253684	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25808.2	CUFF.25808.1	70253932	70254665	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25807.1	mRNA:Solyc09g090220.3.1	70246939	70247036	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g055870.3.1	CUFF.20512.2	63922468	63922544	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g055870.3.1	CUFF.20512.3	63926338	63926495	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13625.2	mRNA:Solyc05g007810.3.1	2247712	2247890	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13625.2	mRNA:Solyc05g007810.3.1	2246652	2246751	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13621.1	mRNA:Solyc05g007770.3.1	2230016	2230127	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g007755.1.1	CUFF.13620.4	2221740	2221825	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g056030.3.1	CUFF.20527.2	64067662	64067740	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13647.2	mRNA:Solyc05g008040.3.1	2453654	2453734	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g055910.3.1	CUFF.20516.2	63945283	63945386	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g055910.3.1	CUFF.20516.2	63950063	63950161	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13638.1	mRNA:Solyc05g007900.2.1	2345555	2345626	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g007930.3.1	CUFF.13639.2	2353667	2353738	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20537.2	mRNA:Solyc07g056170.3.1	64174355	64174444	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13609.1	mRNA:Solyc05g007470.3.1	2039115	2039245	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g056260.3.1	CUFF.20542.2	64231112	64231218	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g007670.3.1	CUFF.13618.2	2164374	2164453	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13616.1	mRNA:Solyc05g007590.3.1	2130069	2130169	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g007610.2.1	CUFF.13617.2	2141578	2141675	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13615.1	mRNA:Solyc05g007570.3.1	2109639	2109733	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g056310.3.1	CUFF.20546.2	64288818	64288900	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13614.1	mRNA:Solyc05g007540.2.1	2087953	2088011	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13613.1	mRNA:Solyc05g007520.1.1	2084188	2084271	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20471.2	CUFF.20471.4	63722683	63722694	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g055625.1.1	CUFF.20471.4	63722948	63723016	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20474.1	mRNA:Solyc07g055640.1.1	63727729	63728597	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20476.1	CUFF.20476.3	63748968	63749634	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g055650.1.1	CUFF.20476.3	63748786	63748845	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g090760.3.1	CUFF.25840.3	70666557	70666786	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25845.1	mRNA:Solyc09g090775.1.1	70677808	70678058	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25867.1	mRNA:Solyc09g090920.3.1	70801945	70802090	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g090840.3.1	CUFF.25849.2	70723929	70724076	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g008200.3.1	CUFF.13663.2	2589752	2589777	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25894.2	mRNA:Solyc09g091220.2.1	71000882	71000988	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25911.1	mRNA:Solyc09g091430.3.1	71178932	71178953	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g009860.2.1	CUFF.13779.2	4073610	4073819	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10662.1	mRNA:Solyc03g123500.4.1	71837699	71837784	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g123560.3.1	CUFF.10668.2	71877243	71877339	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10644.1	mRNA:Solyc03g122270.3.1	71628400	71628470	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g083105.1.1	CUFF.25717.2	69217953	69218393	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g083105.1.1	CUFF.25717.2	69217448	69217535	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25717.2	mRNA:Solyc09g083110.2.1	69218506	69218551	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13831.1	mRNA:Solyc05g010530.3.1	4751709	4751750	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13831.1	mRNA:Solyc05g010530.3.1	4749882	4749993	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20460.1	mRNA:Solyc07g055490.3.1	63635794	63635878	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20456.2	mRNA:Solyc07g055350.3.1	63540847	63540923	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13820.2	mRNA:Solyc05g010367.1.1	4522275	4522366	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20457.2	mRNA:Solyc07g055380.1.1	63563224	63563300	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20458.2	mRNA:Solyc07g055383.1.1	63570656	63570747	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20458.1	mRNA:Solyc07g055383.1.1	63570989	63571099	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13816.1	mRNA:Solyc05g010290.2.1	4454150	4454229	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20442.1	mRNA:Solyc07g055150.3.1	63409441	63409870	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20442.1	mRNA:Solyc07g055160.3.1	63414172	63414254	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20434.1	mRNA:Solyc07g055100.3.1	63365750	63365791	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20429.1	mRNA:Solyc07g055065.1.1	63348452	63348499	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g054900.2.1	CUFF.20418.3	63193485	63193553	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20408.1	mRNA:Solyc07g054745.1.1	63097620	63097687	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10625.1	mRNA:Solyc03g122020.3.1	71501983	71502068	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10630.2	mRNA:Solyc03g122070.2.1	71533479	71533575	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g082700.2.1	mRNA:Solyc09g082695.1.1	68838254	68838298	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g082560.3.1	CUFF.25684.2	68706698	68706822	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25687.1	mRNA:Solyc09g082600.2.1	68757768	68757783	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g082505.1.1	CUFF.25682.2	68648442	68648521	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g082380.3.1	mRNA:Solyc09g082395.1.1	68575411	68576755	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g055530.3.1	mRNA:Solyc02g055520.1.1	2261968	2262176	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g055460.2.1	CUFF.4454.2	2616281	2616325	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g055467.1.1	CUFF.4458.3	2629508	2629831	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13732.1	mRNA:Solyc05g008990.3.1	3179258	3179344	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g009000.3.1	CUFF.13734.2	3183876	3183934	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13737.2	mRNA:Solyc05g009050.2.1	3211071	3211372	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g009240.3.1	CUFF.13745.2	3384273	3384448	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g009405.1.1	CUFF.13757.2	3552975	3553229	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20387.1	mRNA:Solyc07g054460.3.1	62905957	62906006	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20387.1	mRNA:Solyc07g054460.3.1	62901525	62901690	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20389.1	mRNA:Solyc07g054480.2.1	62921020	62921145	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g054450.3.1	CUFF.20386.2	62896539	62896614	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20377.2	mRNA:Solyc07g054400.2.1	62857375	62857597	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20377.2	mRNA:Solyc07g054400.2.1	62860785	62860852	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13764.2	CUFF.13764.1	3754544	3754905	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13764.2	CUFF.13764.1	3756366	3757355	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13764.1	mRNA:Solyc05g009545.1.1	3757442	3757970	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20395.1	mRNA:Solyc07g054630.3.1	63025671	63025752	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13772.1	mRNA:Solyc05g009710.3.1	3906396	3907201	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13777.1	mRNA:Solyc05g009750.1.1	3953389	3953460	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20367.1	mRNA:Solyc07g054340.1.1	62827268	62829265	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20362.1	mRNA:Solyc07g054310.2.1	62789145	62789221	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20366.1	mRNA:Solyc07g054330.3.1	62821335	62821650	+	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g054100.2.1	CUFF.20348.2	62626881	62627035	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g054050.2.1	CUFF.20343.2	62574379	62574471	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20344.1	mRNA:Solyc07g054070.3.1	62585452	62585697	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20342.1	mRNA:Solyc07g054040.2.1	62570859	62571112	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20349.1	mRNA:Solyc07g054120.2.1	62632777	62632842	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20353.1	mRNA:Solyc07g054200.3.1	62686194	62686312	+	1^2-,0	intron retention
SL3.0ch07	CUFF.20360.1	mRNA:Solyc07g054250.2.1	62724351	62724436	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20360.1	mRNA:Solyc07g054233.1.1	62722313	62722326	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20360.1	mRNA:Solyc07g054237.1.1	62724351	62724514	-	1^2-,0	intron retention
SL3.0ch07	mRNA:Solyc07g053980.3.1	CUFF.20340.2	62520046	62520149	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20341.3	mRNA:Solyc07g054020.1.1	62568673	62568756	-	1^2-,0	intron retention
SL3.0ch07	CUFF.20341.3	mRNA:Solyc07g054030.1.1	62569328	62569383	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25779.1	mRNA:Solyc09g089640.2.1	69870645	69870733	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g089570.3.1	CUFF.25774.2	69758326	69758587	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25769.1	mRNA:Solyc09g089550.3.1	69731028	69731116	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10719.1	mRNA:Solyc03g124030.3.1	72249920	72249987	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10716.1	CUFF.10716.2	72207672	72207788	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10716.1	mRNA:Solyc03g124010.3.1	72215290	72215402	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g089840.2.1	CUFF.25792.2	69956596	69956656	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25789.1	mRNA:Solyc09g089810.1.1	69945992	69946062	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10703.1	mRNA:Solyc03g123940.1.1	72142438	72142482	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10705.1	mRNA:Solyc03g123950.3.1	72147272	72147319	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10705.1	mRNA:Solyc03g123950.3.1	72145918	72145971	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25786.1	mRNA:Solyc09g089720.2.1	69926319	69926428	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25752.3	mRNA:Solyc09g083310.2.1	69410599	69410756	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25752.4	CUFF.25752.2	69410830	69410924	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25752.4	CUFF.25752.2	69410401	69410494	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25740.1	mRNA:Solyc09g083240.3.1	69318796	69319127	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3001.1	mRNA:Solyc01g094780.3.1	86064458	86064540	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2985.1	mRNA:Solyc01g094630.3.1	85943984	85944357	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2985.1	mRNA:Solyc01g094630.3.1	85951649	85951737	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2990.1	mRNA:Solyc01g094655.1.1	85973719	85973812	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g094570.3.1	CUFF.2976.1	85873021	85873549	+	1^2-,0	intron retention
SL3.0ch01	CUFF.3033.2	mRNA:Solyc01g095060.3.1	86298484	86298563	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g038060.2.1	CUFF.26909.2	19179464	19179541	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g031440.3.1	CUFF.7930.4	4011995	4012052	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7930.4	mRNA:Solyc03g031430.1.1	4011819	4011889	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g031650.3.1	CUFF.7938.2	4130118	4130201	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3036.1	mRNA:Solyc01g095090.3.1	86348468	86348547	-	1^2-,0	intron retention
SL3.0ch01	CUFF.3038.1	mRNA:Solyc01g095100.3.1	86374182	86374285	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g037897.1.1	CUFF.26886.2	18001403	18001492	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7901.1	mRNA:Solyc03g026240.3.1	3702736	3702815	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7901.1	mRNA:Solyc03g026250.2.1	3704722	3704799	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g026150.3.1	mRNA:Solyc03g026155.1.1	3581845	3582042	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26883.1	mRNA:Solyc10g037890.2.1	17983434	17983567	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26883.1	CUFF.26884.1	17984112	17986055	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7905.1	mRNA:Solyc03g026260.3.1	3728027	3728236	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g091770.3.1	CUFF.2908.2	85225322	85225479	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2903.1	mRNA:Solyc01g091740.3.1	85200486	85200587	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2901.1	mRNA:Solyc01g091705.1.1	85177001	85177012	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g092950.3.1	CUFF.2924.2	85372256	85372343	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2920.1	mRNA:Solyc01g091930.3.1	85343241	85343655	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2934.1	mRNA:Solyc01g094060.3.1	85520722	85520819	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2934.1	mRNA:Solyc01g094060.3.1	85530623	85530645	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2927.1	mRNA:Solyc01g093975.1.1	85439471	85439517	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2937.1	mRNA:Solyc01g094100.2.1	85557011	85557092	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32289.1	mRNA:Solyc12g038430.2.1	51050905	51051004	+	1^2-,0	intron retention
SL3.0ch10	CUFF.27015.1	mRNA:Solyc10g061950.2.1	23453994	23454078	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32285.1	mRNA:Solyc12g038420.2.1	51016125	51017911	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8013.2	CUFF.8013.1	4793682	4793785	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8013.2	mRNA:Solyc03g032240.3.1	4793863	4793963	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8013.2	CUFF.8013.1	4792493	4792620	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g038490.2.1	CUFF.32306.2	51319367	51319434	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8007.1	CUFF.8007.3	4719672	4719758	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g032190.3.1	CUFF.8007.3	4719936	4720029	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g032180.3.1	CUFF.8003.2	4709119	4709229	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32300.1	mRNA:Solyc12g038455.1.1	51225246	51225518	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2945.1	mRNA:Solyc01g094180.3.1	85624406	85624459	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32325.2	mRNA:Solyc12g038653.1.1	51619918	51619941	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32325.2	mRNA:Solyc12g038657.1.1	51620976	51621036	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32316.2	CUFF.32316.1	51521615	51522951	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32316.1	mRNA:Solyc12g038570.2.1	51523026	51523102	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g094330.3.1	CUFF.2960.2	85724091	85724201	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g094330.3.1	CUFF.2960.2	85721979	85722928	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g094237.1.1	mRNA:Solyc01g094260.3.1	85683613	85683771	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32331.1	mRNA:Solyc12g038670.2.1	51650389	51650441	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2967.1	mRNA:Solyc01g094485.1.1	85824148	85824353	+	1^2-,0	intron retention
SL3.0ch03	CUFF.7958.1	mRNA:Solyc03g031800.3.1	4309962	4310066	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g031750.2.1	mRNA:Solyc03g031755.1.1	4245366	4245454	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g031810.3.1	mRNA:Solyc03g031820.3.1	4314460	4315576	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g032140.3.1	CUFF.8001.2	4670677	4672587	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g032110.2.1	mRNA:Solyc03g032120.3.1	4650320	4650347	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26992.1	mRNA:Solyc10g039430.2.1	21855745	21855980	-	1^2-,0	intron retention
SL3.0ch03	CUFF.7987.2	mRNA:Solyc03g032030.3.1	4564199	4565018	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g038200.2.1	mRNA:Solyc12g038210.1.1	50080395	50080657	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2880.1	mRNA:Solyc01g091380.3.1	84887050	84887134	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2867.1	mRNA:Solyc01g091240.3.1	84786521	84786564	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2868.1	mRNA:Solyc01g091260.3.1	84800115	84800457	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g091060.1.1	CUFF.2849.2	84663303	84663369	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2846.1	mRNA:Solyc01g090950.3.1	84532790	84532866	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g091000.3.1	CUFF.2848.2	84578155	84578221	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g090860.3.1	CUFF.2840.2	84445195	84445253	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g090860.3.1	CUFF.2840.2	84450509	84450606	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g090860.3.1	CUFF.2840.3	84461773	84462412	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2840.2	CUFF.2840.3	84461773	84462413	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g090920.3.1	mRNA:Solyc01g090925.1.1	84490762	84490773	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g036325.1.1	CUFF.32176.2	46259220	46259435	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g090720.3.1	CUFF.2827.2	84233182	84233664	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g091530.3.1	CUFF.2889.2	85024635	85024792	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32251.1	CUFF.32251.2	49010585	49010965	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32251.1	mRNA:Solyc12g036915.1.1	49010662	49011030	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2894.1	mRNA:Solyc01g091610.1.1	85069544	85069836	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g091455.1.1	mRNA:Solyc01g091460.3.1	84943334	84943356	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2888.2	mRNA:Solyc01g091500.3.1	85002436	85002506	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g036810.2.1	CUFF.32235.3	48399364	48399427	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g036810.2.1	CUFF.32235.4	48398969	48399011	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32241.1	mRNA:Solyc12g036850.2.1	48491725	48492172	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g019170.2.1	CUFF.26752.2	12110582	12110920	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32231.2	CUFF.32231.1	47954053	47954821	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32231.2	mRNA:Solyc12g036727.1.1	47954931	47955050	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32232.2	mRNA:Solyc12g036800.1.1	48340502	48343494	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26765.1	mRNA:Solyc10g019210.1.1	12538625	12538698	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32223.1	mRNA:Solyc12g036710.2.1	47781197	47781272	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32215.2	mRNA:Solyc12g036630.1.1	47272322	47272404	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g036510.1.1	CUFF.32210.2	47145044	47145094	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g036470.2.1	CUFF.32202.2	46825928	46826014	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g018907.1.1	CUFF.26731.2	10851813	10851886	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2808.1	CUFF.2808.2	83980490	83981246	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g090130.2.1	CUFF.2770.2	83641821	83642189	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g090250.3.1	CUFF.2787.2	83793708	83793965	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g035670.2.1	CUFF.32097.2	44328369	44328427	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g035824.1.1	mRNA:Solyc12g035830.2.1	44501104	44501118	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32100.3	mRNA:Solyc12g035790.1.1	44485991	44486112	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32099.2	mRNA:Solyc12g035770.1.1	44482812	44482886	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2760.1	mRNA:Solyc01g090000.1.1	83587558	83587639	-	1^2-,0	intron retention
SL3.0ch12	CUFF.32112.2	mRNA:Solyc12g035890.2.1	44525501	44525576	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32148.1	mRNA:Solyc12g036143.1.1	45125827	45125843	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2823.1	mRNA:Solyc01g090690.3.1	84207625	84207693	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2817.1	mRNA:Solyc01g090590.3.1	84142067	84142165	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2817.1	mRNA:Solyc01g090590.3.1	84138238	84138317	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g024510.2.1	mRNA:Solyc10g024500.1.1	15011329	15011374	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26795.1	mRNA:Solyc10g024470.2.1	14302729	14302883	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g087995.1.1	CUFF.2677.2	82716164	82716379	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g088030.3.1	CUFF.2680.2	82762188	82762446	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g088250.3.1	CUFF.2692.2	82940349	82940521	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g088160.3.1	CUFF.2687.2	82886493	82886588	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2688.2	CUFF.2688.5	82925641	82925671	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2688.3	CUFF.2688.5	82925948	82925985	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2686.1	mRNA:Solyc01g088150.3.1	82875730	82875788	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g088740.3.1	CUFF.2728.2	83378030	83378595	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2731.1	mRNA:Solyc01g088760.3.1	83390685	83390775	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2731.1	mRNA:Solyc01g088760.3.1	83391345	83391518	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8257.1	mRNA:Solyc03g044250.1.1	8599661	8599808	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8273.2	CUFF.8273.3	9366754	9366868	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g044420.2.1	CUFF.8272.3	9219397	9219854	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g044380.3.1	CUFF.8271.2	8976165	8976258	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8217.1	mRNA:Solyc03g044090.3.1	8054309	8054405	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8224.1	mRNA:Solyc03g044120.1.1	8152739	8152792	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g044160.2.1	CUFF.8227.2	8298509	8298756	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26587.2	mRNA:Solyc10g017940.1.1	6153075	6153155	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26718.2	CUFF.26718.3	10766243	10766267	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26718.2	mRNA:Solyc10g018850.2.1	10762098	10762207	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8289.1	mRNA:Solyc03g044747.1.1	10482872	10482979	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8289.1	CUFF.8289.3	10483356	10484491	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8289.1	CUFF.8289.4	10483009	10483286	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g087095.1.1	CUFF.2576.1	81907523	81907582	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g087095.1.1	CUFF.2576.1	81910560	81910590	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2589.1	mRNA:Solyc01g087290.3.1	82098435	82099507	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g087290.3.1	CUFF.2589.3	82100153	82100360	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2587.1	mRNA:Solyc01g087240.3.1	82053778	82053870	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g087230.3.1	mRNA:Solyc01g087235.1.1	82028482	82028500	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2601.1	CUFF.2601.2	82180474	82180523	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2601.1	CUFF.2601.2	82174137	82174362	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g087340.3.1	mRNA:Solyc01g087336.1.1	82180175	82180220	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g087330.3.1	CUFF.2597.3	82161608	82161819	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2612.1	CUFF.2612.2	82214862	82214931	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2612.1	CUFF.2612.2	82206650	82206727	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2612.1	CUFF.2612.4	82210680	82210759	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8331.1	mRNA:Solyc03g045080.2.1	11507596	11507719	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2626.3	CUFF.2626.2	82228146	82228171	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2626.3	mRNA:Solyc01g087400.3.1	82226277	82226379	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2631.1	mRNA:Solyc01g087410.3.1	82243448	82243525	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2631.1	mRNA:Solyc01g087410.3.1	82239288	82239359	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2631.1	mRNA:Solyc01g087410.3.1	82235028	82235107	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2639.2	CUFF.2639.3	82302121	82302218	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2641.1	mRNA:Solyc01g087500.3.1	82322812	82322893	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2644.2	mRNA:Solyc01g087510.2.1	82330648	82330707	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g087470.3.1	mRNA:Solyc01g087490.3.1	82309229	82309359	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2650.2	mRNA:Solyc01g087590.3.1	82424321	82424418	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g087710.2.1	mRNA:Solyc01g087720.3.1	82497965	82498105	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g046300.2.1	mRNA:Solyc03g046310.1.1	12244764	12244814	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8344.1	mRNA:Solyc09g047855.1.1	11615149	11615208	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g087950.3.1	CUFF.2675.2	82671629	82671703	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g044710.3.1	CUFF.8287.2	10408866	10409000	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g018530.2.1	CUFF.26668.2	8685677	8685749	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26525.1	mRNA:Solyc10g012080.3.1	4397024	4397440	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26504.1	mRNA:Solyc10g011940.1.1	4221244	4221530	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26504.1	mRNA:Solyc10g011940.1.1	4219132	4219315	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g011840.2.1	CUFF.26494.2	4120758	4120971	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26520.1	mRNA:Solyc10g012030.3.1	4311304	4311383	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g011980.3.1	mRNA:Solyc10g011985.1.1	4270014	4270134	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26482.1	mRNA:Solyc10g011680.3.1	3925909	3925938	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g034206.1.1	CUFF.8100.2	5951531	5951730	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g034208.1.1	CUFF.8101.2	5954817	5954831	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g034160.3.1	CUFF.8086.1	5893027	5893048	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8052.1	mRNA:Solyc03g033660.3.1	5276686	5276782	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g033790.3.1	CUFF.8056.2	5433781	5433857	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8027.1	mRNA:Solyc03g033350.3.1	4953865	4954043	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8038.1	mRNA:Solyc03g033460.3.1	5042791	5043375	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g033450.3.1	CUFF.8032.2	5031062	5032480	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g033520.2.1	CUFF.8043.2	5090608	5090996	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g033560.3.1	CUFF.8046.1	5134169	5136892	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8039.1	CUFF.8039.2	5052693	5053482	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8039.2	mRNA:Solyc03g033480.3.1	5055674	5056129	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g033620.3.1	CUFF.8051.2	5236934	5237042	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26480.1	mRNA:Solyc10g009590.3.1	3698084	3698175	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26480.1	CUFF.26480.3	3699221	3700080	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g017890.1.1	CUFF.26583.2	6146503	6146587	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26558.1	mRNA:Solyc10g017610.1.1	5557689	5558048	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26560.1	mRNA:Solyc10g017655.1.1	5596072	5596115	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g043940.3.1	CUFF.8188.3	7691610	7691686	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g043870.3.1	CUFF.8185.2	7554940	7555022	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g043715.1.1	mRNA:Solyc03g043720.3.1	7256329	7256445	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8136.1	mRNA:Solyc03g034453.1.1	6446257	6446891	+	1^2-,0	intron retention
SL3.0ch03	CUFF.8126.1	mRNA:Solyc03g034395.1.1	6329696	6329775	-	1^2-,0	intron retention
SL3.0ch03	CUFF.8135.1	mRNA:Solyc03g034450.3.1	6441779	6441915	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26529.2	CUFF.26529.1	4497743	4497843	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26529.1	mRNA:Solyc10g012160.3.1	4497743	4497842	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g063340.2.1	CUFF.12536.3	55460309	55460373	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12536.2	CUFF.12536.3	55460183	55460227	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12539.1	CUFF.12539.2	55507617	55507728	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g064520.3.1	CUFF.12551.2	55696627	55696738	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g056625.1.1	CUFF.1562.2	55028410	55029163	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g064640.3.1	CUFF.12569.4	55821786	55822283	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1628.2	mRNA:Solyc01g056990.3.1	57862094	57862475	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g100140.2.1	CUFF.33217.2	67961703	67961993	+	1^2-,0	intron retention
SL3.0ch12	CUFF.33221.2	mRNA:Solyc12g100200.2.1	67996115	67996194	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22426.1	mRNA:Solyc08g065320.3.1	53292498	53294010	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g064750.2.1	CUFF.12586.2	55905954	55906079	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g064750.2.1	CUFF.12586.3	55908906	55908982	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g100350.2.1	mRNA:Solyc12g100353.1.1	68115917	68115941	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g100350.2.1	mRNA:Solyc12g100357.1.1	68124080	68124113	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23492.2	mRNA:Solyc09g005360.3.1	286450	286734	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23484.2	mRNA:Solyc09g005320.3.1	249766	249997	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g064943.1.1	mRNA:Solyc04g064950.1.1	56116058	56116157	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12606.1	mRNA:Solyc04g070970.3.1	57869579	57869765	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22455.1	mRNA:Solyc08g065725.1.1	54080669	54080712	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g065710.2.1	CUFF.22454.2	54056991	54057069	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23470.1	mRNA:Solyc09g005190.2.1	167123	167204	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23469.1	CUFF.23469.3	157717	157734	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23469.3	mRNA:Solyc09g005170.2.1	157002	157071	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g005230.3.1	CUFF.23472.2	176825	177559	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g005230.3.1	CUFF.23472.2	175983	176059	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12620.1	mRNA:Solyc04g071040.3.1	58006897	58007035	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12621.2	mRNA:Solyc04g071050.3.1	58033019	58033115	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12613.1	mRNA:Solyc04g071005.1.1	57956094	57956152	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12613.1	mRNA:Solyc04g071010.3.1	57961931	57962034	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23481.2	mRNA:Solyc09g005280.3.1	215416	215509	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22470.1	mRNA:Solyc08g065910.1.1	54312363	54312465	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12629.2	CUFF.12629.3	58112544	58113328	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g057780.3.1	CUFF.12460.2	54855594	54855788	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g056748.1.1	CUFF.12461.2	54855754	54855769	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12461.2	mRNA:Solyc04g057783.1.1	54858318	54858376	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12462.1	mRNA:Solyc04g057840.1.1	54879825	54879881	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12480.1	mRNA:Solyc04g057990.3.1	55053623	55053917	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12489.1	mRNA:Solyc04g057993.1.1	55059332	55059404	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1654.1	mRNA:Solyc01g057170.3.1	59426167	59426292	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1654.1	CUFF.1654.3	59422649	59423046	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1684.2	mRNA:Solyc01g057340.3.1	60499658	60499746	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1684.2	mRNA:Solyc01g057340.3.1	60498682	60499214	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1683.1	mRNA:Solyc01g057320.2.1	60480810	60480871	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1703.1	mRNA:Solyc01g057430.3.1	60889685	60889773	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1703.1	mRNA:Solyc01g057430.3.1	60888579	60888756	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1703.1	CUFF.1703.3	60889382	60889585	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g057390.2.1	CUFF.1702.2	60812316	60812375	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1710.2	mRNA:Solyc01g057480.2.1	61028212	61028264	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1710.2	mRNA:Solyc01g057475.1.1	61030126	61030266	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g057477.1.1	CUFF.1711.3	61052582	61052965	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1711.2	CUFF.1711.3	61051933	61052502	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1709.1	CUFF.1709.2	61024364	61026112	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1709.2	mRNA:Solyc01g057473.1.1	61024364	61026111	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10617.2	mRNA:Solyc03g121870.3.1	71392448	71392535	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10992.1	mRNA:Solyc04g008760.2.1	2413131	2413198	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g121920.3.1	CUFF.10620.2	71414362	71414776	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10603.1	mRNA:Solyc03g121720.2.1	71285015	71285064	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g121710.2.1	CUFF.10602.2	71278518	71278840	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10976.4	mRNA:Solyc04g008680.3.1	2329904	2329994	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g008640.3.1	CUFF.10970.2	2254707	2254786	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g121780.1.1	CUFF.10610.2	71327251	71327369	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10610.2	mRNA:Solyc03g121790.2.1	71330030	71330106	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23499.1	mRNA:Solyc09g005480.3.1	331486	331686	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22489.1	mRNA:Solyc08g066100.3.1	54591248	54591392	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23505.2	mRNA:Solyc09g005523.1.1	353888	353909	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23505.2	mRNA:Solyc09g005523.1.1	354581	354603	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23505.1	mRNA:Solyc09g005527.1.1	355197	355218	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23505.1	mRNA:Solyc09g005540.2.1	355702	355731	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g005670.2.1	mRNA:Solyc09g005690.3.1	471830	472383	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g005690.3.1	CUFF.23521.4	466789	466959	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23532.1	mRNA:Solyc09g005800.2.1	550980	551048	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23528.1	mRNA:Solyc09g005770.1.1	541725	541806	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g058040.2.1	CUFF.12497.3	55103858	55104237	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g058060.2.1	CUFF.12500.2	55115629	55115699	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g058000.2.1	CUFF.12491.3	55086568	55086646	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g005890.3.1	CUFF.23535.2	618782	618878	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g010130.2.1	CUFF.28927.1	3248912	3249031	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23545.1	mRNA:Solyc09g006010.2.1	685358	685476	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23541.1	CUFF.23541.3	675806	675841	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11019.1	mRNA:Solyc04g009130.3.1	2649131	2649154	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11019.1	mRNA:Solyc04g009135.1.1	2650781	2650809	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11027.1	mRNA:Solyc04g009180.2.1	2686917	2687677	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12509.1	mRNA:Solyc04g058190.3.1	55237741	55238450	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12525.1	mRNA:Solyc04g063245.1.1	55404408	55404495	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11015.1	mRNA:Solyc04g009060.3.1	2619107	2619161	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g058065.1.1	CUFF.12501.2	55126236	55128393	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g066620.3.1	CUFF.22539.3	55436000	55437935	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g066620.3.1	CUFF.22539.2	55439411	55440390	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g066620.3.1	CUFF.22539.3	55440824	55440893	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22540.1	mRNA:Solyc08g066630.2.1	55454681	55454840	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28951.1	mRNA:Solyc11g010490.2.1	3550348	3550454	+	1^2-,0	intron retention
SL3.0ch04	CUFF.11013.2	mRNA:Solyc04g009050.3.1	2612444	2612543	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g009050.3.1	CUFF.11013.3	2613625	2613850	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11010.1	mRNA:Solyc04g009010.2.1	2583366	2584331	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g008940.3.1	mRNA:Solyc04g008970.3.1	2566549	2567070	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g010350.2.1	CUFF.28947.3	3426854	3426938	+	1^2-,0	intron retention
SL3.0ch11	CUFF.28947.2	CUFF.28947.3	3427093	3427270	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22544.2	CUFF.22544.3	55564312	55564382	-	1^2-,0	intron retention
SL3.0ch04	CUFF.11004.1	mRNA:Solyc04g008920.1.1	2537687	2537771	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28981.1	mRNA:Solyc11g010870.2.1	3943520	3944484	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28972.1	mRNA:Solyc11g010700.2.1	3736643	3736688	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12716.1	mRNA:Solyc04g071920.2.1	59026290	59026364	-	1^2-,0	intron retention
SL3.0ch11	CUFF.28960.1	mRNA:Solyc11g010610.2.1	3669620	3669642	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g121320.3.1	CUFF.10565.2	70943435	70943538	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10588.1	mRNA:Solyc03g121550.3.1	71126423	71126503	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g121510.3.1	CUFF.10584.2	71084398	71084471	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10577.1	mRNA:Solyc03g121490.3.1	71059857	71059937	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g057840.3.1	mRNA:Solyc01g057850.3.1	64049919	64050058	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g057840.3.1	mRNA:Solyc01g057850.3.1	64044658	64045367	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10554.1	mRNA:Solyc03g121210.3.1	70856946	70857199	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10553.1	mRNA:Solyc03g121200.3.1	70855444	70855596	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g121230.3.1	CUFF.10555.2	70866977	70867090	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g066800.3.1	CUFF.22562.2	55725759	55725864	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10535.1	mRNA:Solyc03g120900.2.1	70612257	70612321	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g120960.1.1	mRNA:Solyc03g120955.1.1	70675180	70675227	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22573.2	mRNA:Solyc08g066980.3.1	55926756	55926841	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g121010.3.1	CUFF.10541.2	70733259	70733803	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g072065.1.1	mRNA:Solyc04g072080.1.1	59237254	59237341	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g072065.1.1	mRNA:Solyc04g072090.1.1	59237575	59237649	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g072010.3.1	CUFF.12719.2	59164979	59166395	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23579.1	mRNA:Solyc09g007370.3.1	968655	968736	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12737.1	mRNA:Solyc04g072260.2.1	59349262	59349289	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12735.1	mRNA:Solyc04g072230.3.1	59307328	59307646	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12733.1	mRNA:Solyc04g072200.2.1	59285038	59285411	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23589.1	mRNA:Solyc09g007510.2.1	1088536	1088645	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g120520.2.1	CUFF.10505.2	70381684	70382432	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g007260.3.1	CUFF.23566.2	858383	858478	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g007260.3.1	CUFF.23566.2	859046	859431	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10503.2	mRNA:Solyc03g120480.3.1	70349056	70349167	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23574.2	mRNA:Solyc09g007343.1.1	939508	940124	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10519.1	mRNA:Solyc03g120660.3.1	70468619	70468715	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10894.1	mRNA:Solyc04g007950.3.1	1595320	1595399	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10529.3	CUFF.10529.4	70565723	70566116	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23555.1	mRNA:Solyc09g007180.3.1	804795	804898	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10913.1	mRNA:Solyc04g008110.3.1	1770229	1770251	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g011500.2.1	CUFF.29030.2	4554991	4555083	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22614.1	mRNA:Solyc08g067470.3.1	56558270	56558367	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g067420.3.1	CUFF.22611.2	56534205	56534702	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g067420.3.1	CUFF.22611.2	56528470	56528614	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10904.1	mRNA:Solyc04g008040.3.1	1706075	1706211	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g072520.2.1	CUFF.12774.2	59605694	59605773	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g008010.3.1	mRNA:Solyc04g008020.3.1	1680602	1680726	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10908.1	mRNA:Solyc04g008050.3.1	1711246	1711327	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10908.1	mRNA:Solyc04g008050.3.1	1712071	1712177	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g072540.3.1	CUFF.12776.3	59616866	59617142	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g072530.2.1	CUFF.12775.2	59609309	59610053	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29014.1	mRNA:Solyc11g011300.2.1	4347820	4347924	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g011220.2.1	CUFF.29010.2	4269953	4269980	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g008140.2.1	CUFF.10917.2	1811712	1813070	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10917.2	mRNA:Solyc04g008130.2.1	1811281	1811356	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g011130.2.1	CUFF.28998.3	4212920	4214362	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22585.1	mRNA:Solyc08g067185.1.1	56233895	56234195	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29006.1	mRNA:Solyc11g011180.2.1	4247987	4248076	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10935.1	mRNA:Solyc04g008370.2.1	2013164	2013202	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g008390.2.1	CUFF.10938.2	2026654	2026721	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10938.2	CUFF.10938.4	2031856	2031902	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10938.4	mRNA:Solyc04g008410.2.1	2031761	2031844	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23614.1	mRNA:Solyc09g007840.3.1	1375257	1375331	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22590.1	mRNA:Solyc08g067245.1.1	56335504	56335556	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22590.1	CUFF.22590.3	56335620	56335917	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22591.2	mRNA:Solyc08g067250.3.1	56359319	56359771	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10932.1	mRNA:Solyc04g008295.1.1	1982924	1983867	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g007730.3.1	CUFF.23603.2	1275000	1275174	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g067320.2.1	mRNA:Solyc08g067330.1.1	56451918	56452035	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22608.1	mRNA:Solyc08g067410.2.1	56518722	56518886	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g007770.2.1	mRNA:Solyc09g007765.1.1	1301069	1301267	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1827.1	mRNA:Solyc01g058260.3.1	65869627	65869967	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1827.1	mRNA:Solyc01g058260.3.1	65868433	65868511	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1840.1	mRNA:Solyc01g058350.1.1	66285901	66286031	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10887.2	CUFF.10887.1	1455279	1455539	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10887.2	mRNA:Solyc04g007767.1.1	1455609	1455620	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29033.1	mRNA:Solyc11g011510.1.1	4563255	4563377	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29033.1	mRNA:Solyc11g011504.1.1	4563255	4563787	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29037.1	CUFF.29037.3	4589879	4590939	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29037.1	mRNA:Solyc11g011535.1.1	4590966	4591032	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29037.2	CUFF.29037.3	4593580	4594789	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g011542.1.1	CUFF.29041.2	4608765	4608910	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12648.1	mRNA:Solyc04g071285.1.1	58301296	58301379	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g058100.2.1	CUFF.1811.2	65141943	65142136	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1816.1	mRNA:Solyc01g058170.3.1	65494059	65494459	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1820.1	CUFF.1820.2	65557968	65558032	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1820.2	mRNA:Solyc01g058210.2.1	65557726	65557828	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1820.1	CUFF.1820.2	65557320	65557398	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g071140.3.1	CUFF.12632.2	58161230	58161320	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10501.2	CUFF.10501.4	70333161	70333417	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23682.1	mRNA:Solyc09g008680.3.1	2128535	2128604	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g120190.3.1	CUFF.10479.2	70134189	70134324	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23697.1	CUFF.23697.2	2219677	2219824	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23697.2	mRNA:Solyc09g008790.3.1	2219582	2219644	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23700.1	mRNA:Solyc09g008830.3.1	2256757	2256956	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23693.1	mRNA:Solyc09g008730.3.1	2165181	2165319	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10480.1	mRNA:Solyc03g120200.2.1	70140853	70140960	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g058660.1.1	CUFF.1854.2	67346120	67346429	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g120010.3.1	CUFF.10464.3	70004532	70004570	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g008260.3.1	CUFF.23654.2	1732379	1732473	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g008260.3.1	CUFF.23654.2	1735503	1735594	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23657.1	mRNA:Solyc09g008330.3.1	1794839	1794886	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10473.1	mRNA:Solyc03g120130.3.1	70103197	70103290	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22666.1	mRNA:Solyc08g067960.3.1	57083060	57083171	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22641.1	mRNA:Solyc08g067795.1.1	56883541	56883617	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22653.1	mRNA:Solyc08g067860.2.1	56953708	56953784	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22620.2	mRNA:Solyc08g067580.2.1	56644545	56644618	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22626.1	mRNA:Solyc08g067620.2.1	56702436	56702506	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23626.1	mRNA:Solyc09g008010.3.1	1486958	1487856	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g119630.3.1	mRNA:Solyc03g119625.1.1	69675101	69675112	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22621.1	mRNA:Solyc08g067595.1.1	56648112	56648239	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22628.3	CUFF.22628.2	56772181	56772262	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22628.3	CUFF.22628.2	56771801	56771875	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22628.2	mRNA:Solyc08g067730.2.1	56772157	56772262	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23638.1	mRNA:Solyc09g008150.2.1	1614369	1614966	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23642.1	mRNA:Solyc09g008200.3.1	1653672	1653754	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12700.1	mRNA:Solyc04g071780.3.1	58863072	58863141	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29091.2	mRNA:Solyc11g012180.2.1	5103440	5103902	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g007150.3.1	CUFF.10837.2	870443	870524	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10830.1	mRNA:Solyc04g007100.3.1	809109	809185	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g071715.1.1	CUFF.12697.2	58780567	58780665	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29074.1	mRNA:Solyc11g011840.2.1	4799539	4800815	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29071.1	mRNA:Solyc11g011770.2.1	4751448	4752067	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g068165.1.1	mRNA:Solyc08g068170.1.1	57350711	57350859	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10872.2	mRNA:Solyc04g007600.3.1	1286526	1286634	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10873.1	mRNA:Solyc04g007610.3.1	1288897	1289087	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10860.2	mRNA:Solyc04g007470.3.1	1148962	1149050	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g071360.3.1	CUFF.12660.2	58429649	58429749	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12660.2	CUFF.12660.3	58429018	58429172	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g071470.3.1	CUFF.12669.2	58536693	58537405	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1265.1	mRNA:Solyc01g020285.1.1	28555009	28555034	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g020155.1.1	CUFF.1257.4	27729426	27729489	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23761.1	mRNA:Solyc09g009670.3.1	3070371	3070440	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g005890.2.1	CUFF.10811.2	573709	573777	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10808.1	mRNA:Solyc04g005830.3.1	532377	532478	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10816.1	mRNA:Solyc04g005910.3.1	588511	588606	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10786.1	mRNA:Solyc04g005520.3.1	346112	346523	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12883.1	mRNA:Solyc04g074990.3.1	60971361	60971662	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10788.1	mRNA:Solyc04g005530.2.1	353067	353110	-	1^2-,0	intron retention
SL3.0ch04	CUFF.10792.2	mRNA:Solyc04g005600.2.1	396408	396613	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1251.1	mRNA:Solyc01g018010.2.1	26663558	26663777	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g076200.3.1	CUFF.12900.2	61220784	61220875	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12901.1	mRNA:Solyc04g076210.2.1	61230139	61230317	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10800.1	mRNA:Solyc04g005670.2.1	446068	446150	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12893.1	mRNA:Solyc04g076150.3.1	61186282	61186346	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g005710.2.1	CUFF.10804.2	461125	461166	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23724.1	mRNA:Solyc09g009220.3.1	2597636	2597696	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g017560.2.1	CUFF.1210.2	24025924	24025997	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22700.1	mRNA:Solyc08g068410.2.1	57602346	57602429	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23715.1	mRNA:Solyc09g009100.3.1	2446694	2447421	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23709.1	mRNA:Solyc09g009030.3.1	2380802	2380887	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g068530.3.1	CUFF.22713.2	57726881	57727275	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23703.1	mRNA:Solyc09g008930.3.1	2313081	2313184	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23704.1	mRNA:Solyc09g008940.3.1	2333419	2333521	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1205.2	mRNA:Solyc01g017530.1.1	23884268	23884327	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12869.1	mRNA:Solyc04g074790.2.1	60793572	60793591	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22718.1	mRNA:Solyc08g068580.3.1	57782393	57782922	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23738.2	mRNA:Solyc09g009430.3.1	2862568	2862669	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g074710.3.1	CUFF.12865.2	60717241	60717323	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23742.1	mRNA:Solyc09g009450.2.1	2886727	2888424	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g009370.3.1	CUFF.23733.2	2783946	2784028	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g068925.1.1	CUFF.22742.3	58069126	58069153	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22734.1	mRNA:Solyc08g068780.2.1	57965875	57965943	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g068810.3.1	CUFF.22736.2	57978200	57978503	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g074900.3.1	mRNA:Solyc04g074905.1.1	60901984	60902012	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22763.1	mRNA:Solyc08g069125.1.1	58260122	58260340	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g069120.3.1	CUFF.22762.2	58252444	58252948	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22765.1	mRNA:Solyc08g069180.3.1	58295820	58295880	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1331.2	mRNA:Solyc01g020570.2.1	31664878	31664940	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1325.3	mRNA:Solyc01g020525.1.1	31065772	31065868	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g021675.1.1	CUFF.1351.2	32443147	32443900	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1341.1	mRNA:Solyc01g021670.3.1	32433920	32433971	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10747.1	mRNA:Solyc04g005200.3.1	145544	146073	+	1^2-,0	intron retention
SL3.0ch04	CUFF.10743.1	mRNA:Solyc04g005160.2.1	107102	107144	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g056595.1.1	CUFF.15833.2	66707431	66707511	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15822.1	mRNA:Solyc05g056440.2.1	66582263	66582389	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15821.1	mRNA:Solyc05g056425.1.1	66567620	66567677	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15819.1	mRNA:Solyc05g056370.3.1	66551487	66551555	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15818.2	mRNA:Solyc05g056325.1.1	66506674	66506839	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g074350.3.1	mRNA:Solyc04g074380.3.1	60432327	60432528	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g074380.3.1	mRNA:Solyc04g074370.2.1	60444323	60444338	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12847.1	mRNA:Solyc04g074390.3.1	60460834	60460899	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22797.2	mRNA:Solyc08g074560.3.1	58784408	58784805	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12786.1	CUFF.12786.3	59658058	59658106	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g072605.1.1	CUFF.12786.6	59658950	59658994	+	1^2-,0	intron retention
SL3.0ch09	CUFF.23803.1	mRNA:Solyc09g010030.2.1	3452175	3452254	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g009985.1.1	CUFF.23800.2	3444807	3444878	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22810.2	mRNA:Solyc08g074760.3.1	59022970	59023059	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22815.1	mRNA:Solyc08g074780.3.1	59046908	59046994	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12808.2	mRNA:Solyc04g072840.3.1	59880086	59880182	-	1^2-,0	intron retention
SL3.0ch09	CUFF.23810.1	mRNA:Solyc09g010140.2.1	3517619	3517726	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g072880.3.1	CUFF.12810.2	59922717	59922799	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g072890.3.1	CUFF.12811.2	59932014	59932085	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12811.2	CUFF.12811.3	59931509	59931981	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g074705.1.1	CUFF.22804.2	58980142	58980567	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22805.1	mRNA:Solyc08g074710.1.1	58978861	58978999	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22806.1	mRNA:Solyc08g074730.2.1	58987533	58987628	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12805.2	mRNA:Solyc04g072790.2.1	59852577	59852660	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12805.2	mRNA:Solyc04g072790.2.1	59851016	59851119	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g072700.3.1	CUFF.12795.3	59746185	59746783	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22824.1	CUFF.22824.4	59124991	59125085	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22828.2	CUFF.22828.1	59159676	59160070	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22828.2	mRNA:Solyc08g074887.1.1	59157594	59159653	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22828.2	mRNA:Solyc08g074890.3.1	59160346	59160432	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22827.1	CUFF.22827.4	59154333	59154452	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g074855.1.1	CUFF.22822.2	59117080	59117166	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g074950.2.1	CUFF.22833.2	59201852	59201929	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g074950.2.1	CUFF.22833.2	59201501	59201576	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22833.2	CUFF.22833.3	59200874	59201108	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g044370.2.1	CUFF.1447.2	43235685	43235771	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g044420.3.1	CUFF.1453.2	43832343	43832426	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22835.1	mRNA:Solyc08g074990.2.1	59250653	59250730	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g075013.1.1	CUFF.22838.2	59273447	59273898	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13002.1	mRNA:Solyc04g077110.3.1	62149986	62150107	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1445.1	mRNA:Solyc01g044340.3.1	43155605	43155754	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1445.1	mRNA:Solyc01g044350.3.1	43157489	43157565	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22854.2	mRNA:Solyc08g075080.3.1	59358470	59358579	+	1^2-,0	intron retention
SL3.0ch08	CUFF.22850.1	mRNA:Solyc08g075034.1.1	59322592	59322614	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g075020.3.1	CUFF.22844.2	59300068	59300163	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1415.1	mRNA:Solyc01g028935.1.1	39813925	39813965	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g074830.3.1	CUFF.22818.2	59084013	59084110	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15759.1	mRNA:Solyc05g055680.3.1	66074976	66075073	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15760.1	CUFF.15760.2	66079784	66080060	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15747.1	mRNA:Solyc05g055600.3.1	66017204	66017288	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15774.1	mRNA:Solyc05g055905.1.1	66203640	66203723	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15786.1	mRNA:Solyc05g056040.3.1	66274510	66275816	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15743.1	mRNA:Solyc05g055580.2.1	66003464	66003543	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15743.1	mRNA:Solyc05g055585.1.1	66004291	66004809	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13049.1	mRNA:Solyc04g077840.2.1	62807395	62808267	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13049.1	mRNA:Solyc04g077835.1.1	62808160	62808267	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13044.2	mRNA:Solyc04g077750.2.1	62745422	62746667	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g075520.3.1	CUFF.22884.2	59796917	59797315	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g075520.3.1	CUFF.22884.2	59796115	59796200	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g075520.3.1	CUFF.22884.2	59794431	59794521	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22883.2	mRNA:Solyc08g075500.3.1	59778808	59778903	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g077900.1.1	CUFF.13052.2	62859616	62859694	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13022.1	mRNA:Solyc04g077480.3.1	62482707	62482808	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g077330.3.1	mRNA:Solyc04g077340.3.1	62369087	62369176	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g077330.3.1	mRNA:Solyc04g077380.2.1	62384642	62384668	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g077615.1.1	mRNA:Solyc04g077630.3.1	62664885	62664964	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g077615.1.1	mRNA:Solyc04g077640.3.1	62668915	62669027	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g077615.1.1	mRNA:Solyc04g077660.3.1	62679710	62679798	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13037.1	mRNA:Solyc04g077610.3.1	62647029	62647120	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1363.1	mRNA:Solyc01g022740.3.1	32752187	32752470	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22873.1	mRNA:Solyc08g075410.3.1	59667772	59668632	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13032.1	mRNA:Solyc04g077540.3.1	62584459	62584675	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22868.1	mRNA:Solyc08g075360.2.1	59620944	59620981	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1525.1	mRNA:Solyc01g056280.3.1	52758700	52758742	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12911.2	mRNA:Solyc04g076303.1.1	61302424	61302496	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15730.3	mRNA:Solyc05g055430.3.1	65933098	65933439	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g049925.1.1	CUFF.1501.2	47410181	47410504	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1488.1	mRNA:Solyc01g049840.1.1	46573236	46573303	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g050047.1.1	mRNA:Solyc01g050070.3.1	48277613	48277836	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1511.1	mRNA:Solyc01g050040.3.1	48061586	48061666	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1507.2	CUFF.1507.3	47694614	47694655	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g049975.1.1	CUFF.1507.3	47694467	47694523	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g049975.1.1	mRNA:Solyc01g050010.3.1	47694799	47694943	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1507.3	mRNA:Solyc01g050010.3.1	47695351	47695585	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1504.2	mRNA:Solyc01g049970.2.1	47634891	47634965	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15689.1	mRNA:Solyc05g054870.3.1	65521883	65521966	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15691.1	CUFF.15691.2	65560468	65560567	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15691.1	CUFF.15691.2	65547261	65547809	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15691.1	mRNA:Solyc05g054915.1.1	65547888	65548033	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15691.2	mRNA:Solyc05g054910.3.1	65560468	65560565	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15685.1	mRNA:Solyc05g054780.2.1	65468261	65468334	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15718.1	mRNA:Solyc05g055240.3.1	65821178	65821913	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15711.1	mRNA:Solyc05g055110.3.1	65763799	65763853	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15708.2	mRNA:Solyc05g055050.2.1	65695476	65695503	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g055020.3.1	CUFF.15705.2	65644658	65645047	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12987.2	CUFF.12987.4	61966886	61967016	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12995.2	mRNA:Solyc04g076990.3.1	62033086	62033152	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12997.1	mRNA:Solyc04g077030.3.1	62080819	62080894	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12997.1	mRNA:Solyc04g077030.3.1	62079439	62079548	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12973.1	mRNA:Solyc04g076830.3.1	61789727	61789812	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12947.1	mRNA:Solyc04g076690.3.1	61674593	61676045	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12962.1	mRNA:Solyc04g076715.1.1	61707188	61707260	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g076660.3.1	CUFF.12945.2	61643127	61643219	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g076620.3.1	CUFF.12942.3	61589135	61589220	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g076525.1.1	mRNA:Solyc04g076530.3.1	61503985	61504321	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12932.1	mRNA:Solyc04g076540.3.1	61528628	61528737	-	1^2-,0	intron retention
SL3.0ch04	CUFF.12930.1	mRNA:Solyc04g076520.2.1	61490257	61490321	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g076510.3.1	CUFF.12929.2	61479562	61479649	+	1^2-,0	intron retention
SL3.0ch04	CUFF.12916.1	mRNA:Solyc04g076330.2.1	61331779	61332202	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g020353.1.1	mRNA:Solyc11g020380.2.1	11047110	11047195	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29480.1	mRNA:Solyc11g020550.1.1	11439572	11439659	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29476.2	mRNA:Solyc11g020478.1.1	11216901	11216915	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29487.1	mRNA:Solyc11g020640.2.1	11785220	11785231	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g115660.3.1	CUFF.10066.3	66784989	66785068	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10066.3	mRNA:Solyc03g115680.3.1	66799265	66799407	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g115680.3.1	CUFF.10066.4	66809527	66809605	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10061.3	mRNA:Solyc03g115590.3.1	66726130	66726185	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g116060.3.1	CUFF.10102.2	67048196	67048266	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10105.2	mRNA:Solyc03g116120.2.1	67113847	67113913	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10096.1	mRNA:Solyc03g115920.3.1	66984497	66984585	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15633.1	mRNA:Solyc05g054150.3.1	64955026	64955113	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10118.2	mRNA:Solyc03g116270.3.1	67250768	67250856	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g116225.1.1	CUFF.10109.2	67202885	67202997	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g116335.1.1	CUFF.10119.2	67305531	67305554	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15654.2	mRNA:Solyc05g054295.1.1	65091371	65091660	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15654.1	mRNA:Solyc05g054295.1.1	65091087	65091179	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15657.1	mRNA:Solyc05g054320.3.1	65104984	65105008	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15657.1	mRNA:Solyc05g054330.3.1	65107680	65107884	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g078340.3.1	CUFF.13088.2	63190002	63190062	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13098.1	mRNA:Solyc04g078390.2.1	63217202	63217263	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29546.1	mRNA:Solyc11g021310.1.1	13419863	13419932	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29541.1	mRNA:Solyc11g021210.1.1	13408510	13408578	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29536.2	mRNA:Solyc11g021130.1.1	13391277	13391320	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9960.1	mRNA:Solyc03g114710.3.1	66092653	66092720	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9963.1	mRNA:Solyc03g114750.3.1	66138863	66138937	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g114790.3.1	CUFF.9968.4	66167701	66168100	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10006.3	CUFF.10006.6	66458430	66458474	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10035.1	mRNA:Solyc03g115310.1.1	66558215	66558330	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15569.2	mRNA:Solyc05g053130.3.1	64092910	64092980	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15569.2	mRNA:Solyc05g053130.3.1	64101529	64101592	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10021.1	mRNA:Solyc03g115247.1.1	66512467	66512524	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g053100.3.1	CUFF.15566.2	64074145	64074213	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10047.1	mRNA:Solyc03g115440.2.1	66631855	66632006	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g115410.3.1	mRNA:Solyc03g115415.1.1	66623393	66623575	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g053260.3.1	CUFF.15576.2	64260358	64260436	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g053715.1.1	CUFF.15606.3	64603370	64603789	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15606.2	CUFF.15606.3	64609027	64609121	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15613.1	CUFF.15613.2	64646503	64646654	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13058.1	mRNA:Solyc04g077930.3.1	62884820	62884861	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13066.1	mRNA:Solyc04g078080.1.1	63011395	63011464	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13066.1	mRNA:Solyc04g078080.1.1	63010928	63011007	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13053.1	mRNA:Solyc04g077920.3.1	62868000	62868091	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g020870.2.1	CUFF.29508.2	12842099	12842192	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15603.1	mRNA:Solyc05g053650.3.1	64567566	64567648	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13074.1	mRNA:Solyc04g078230.1.1	63107511	63107569	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g051160.2.1	CUFF.29618.2	17783074	17783188	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g051125.1.1	CUFF.29616.2	17571315	17571474	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9915.1	mRNA:Solyc03g114290.3.1	65790618	65791766	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g114110.3.1	CUFF.9900.3	65625030	65625732	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9904.1	mRNA:Solyc03g114170.3.1	65669724	65670179	+	1^2-,0	intron retention
SL3.0ch03	CUFF.9954.1	mRNA:Solyc03g114650.2.1	66058190	66058218	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g114590.3.1	mRNA:Solyc03g114593.1.1	66019821	66019863	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g052190.3.1	mRNA:Solyc05g052195.1.1	63317580	63317646	-	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g052140.3.1	mRNA:Solyc05g052150.3.1	63295904	63295992	-	1^2-,0	intron retention
SL3.0ch03	CUFF.9938.1	mRNA:Solyc03g114520.3.1	65982428	65983450	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15505.1	mRNA:Solyc05g052210.3.1	63342899	63343129	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g114300.3.1	CUFF.9916.3	65796015	65796087	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g114300.3.1	CUFF.9916.2	65797658	65797780	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g050890.2.1	CUFF.29598.2	16743899	16743962	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15551.1	CUFF.15551.4	63898698	63898813	+	1^2-,0	intron retention
SL3.0ch05	CUFF.15545.1	mRNA:Solyc05g052820.3.1	63841281	63841869	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29567.1	mRNA:Solyc11g022530.2.1	14425769	14425881	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29568.1	mRNA:Solyc11g022540.2.1	14427486	14427580	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15553.1	mRNA:Solyc05g052920.3.1	63944783	63945178	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15537.1	mRNA:Solyc05g052700.3.1	63759391	63759524	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g022600.2.1	CUFF.29574.4	14714699	14715173	-	1^2-,0	intron retention
SL3.0ch05	CUFF.15534.1	mRNA:Solyc05g052640.3.1	63711501	63711590	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29166.2	mRNA:Solyc11g012850.2.1	5644219	5644301	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29179.1	mRNA:Solyc11g012940.2.1	5788410	5788490	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29181.2	mRNA:Solyc11g012950.2.1	5797951	5798040	+	1^2-,0	intron retention
SL3.0ch12	CUFF.32998.2	mRNA:Solyc12g094580.2.1	65745574	65745806	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33004.1	mRNA:Solyc12g094645.1.1	65796495	65797601	+	1^2-,0	intron retention
SL3.0ch12	CUFF.33006.2	mRNA:Solyc12g094650.2.1	65795666	65795754	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10358.1	CUFF.10358.2	69208688	69208791	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10358.1	mRNA:Solyc03g118995.1.1	69204207	69204560	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10350.1	mRNA:Solyc03g118890.3.1	69162343	69162456	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g119190.3.1	CUFF.10384.3	69343927	69344030	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g012550.2.1	CUFF.29115.3	5365415	5365514	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29111.1	mRNA:Solyc11g012510.2.1	5329732	5329953	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10371.2	mRNA:Solyc03g119140.3.1	69330678	69330768	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29122.1	CUFF.29122.2	5407129	5407478	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29122.2	mRNA:Solyc11g012620.2.1	5413834	5413910	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29119.3	mRNA:Solyc11g012570.2.1	5376633	5376734	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g119050.3.1	CUFF.10365.2	69252730	69252825	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g119030.3.1	CUFF.10363.2	69227124	69227225	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10414.2	mRNA:Solyc03g119470.2.1	69559355	69559431	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10414.2	CUFF.10414.3	69561387	69561475	+	1^2-,0	intron retention
SL3.0ch12	CUFF.33018.1	mRNA:Solyc12g095830.2.1	65927547	65927776	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g095800.2.1	CUFF.33016.2	65908800	65908840	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1874.1	mRNA:Solyc01g059853.1.1	68768361	68768414	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g095890.2.1	CUFF.33022.2	65981627	65981696	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1894.1	mRNA:Solyc01g060080.3.1	69524158	69524292	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1894.1	mRNA:Solyc01g060080.3.1	69496459	69496538	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33038.1	mRNA:Solyc12g096000.2.1	66065417	66065468	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1917.1	mRNA:Solyc01g060200.2.1	69724294	69724338	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1917.1	mRNA:Solyc01g060200.2.1	69723346	69723433	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g060205.1.1	CUFF.1920.2	69735487	69735697	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1920.2	mRNA:Solyc01g060210.3.1	69736617	69736853	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33047.1	mRNA:Solyc12g096140.2.1	66160310	66160353	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g096210.2.1	CUFF.33051.2	66208975	66211291	+	1^2-,0	intron retention
SL3.0ch12	CUFF.33058.1	mRNA:Solyc12g096280.2.1	66250903	66251102	-	1^2-,0	intron retention
SL3.0ch01	CUFF.1926.1	mRNA:Solyc01g060245.1.1	69904943	69905166	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1926.1	mRNA:Solyc01g060250.2.1	69905138	69906973	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29262.1	mRNA:Solyc11g013845.1.1	7265595	7265646	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g118490.3.1	CUFF.10308.2	68825429	68825593	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10305.1	mRNA:Solyc03g118470.3.1	68816824	68817096	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10334.1	CUFF.10334.2	69031113	69031188	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10335.1	mRNA:Solyc03g118710.3.1	69043321	69043347	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g013770.2.1	CUFF.29252.2	7155105	7155126	+	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g013750.2.1	CUFF.29249.2	7104778	7105747	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g061497.1.1	CUFF.22198.3	49034623	49034712	+	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g061497.1.1	CUFF.22198.2	49036799	49036877	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g096660.2.1	CUFF.33080.2	66468014	66468117	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g096730.3.1	CUFF.33086.2	66507698	66507780	+	1^2-,0	intron retention
SL3.0ch12	CUFF.33077.1	mRNA:Solyc12g096640.2.1	66450794	66450884	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33073.1	mRNA:Solyc12g096610.2.1	66432267	66432938	+	1^2-,0	intron retention
SL3.0ch12	CUFF.33064.1	mRNA:Solyc12g096430.1.1	66337192	66337377	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33068.2	mRNA:Solyc12g096520.2.1	66385851	66385935	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29216.1	mRNA:Solyc11g013235.1.1	6147356	6147401	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g013290.2.1	mRNA:Solyc11g013293.1.1	6186014	6186221	-	1^2-,0	intron retention
SL3.0ch11	mRNA:Solyc11g013293.1.1	mRNA:Solyc11g013295.1.1	6216771	6216998	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10268.1	mRNA:Solyc03g118050.3.1	68527814	68527919	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10269.1	mRNA:Solyc03g118070.3.1	68537453	68537558	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10263.1	mRNA:Solyc03g118010.3.1	68477574	68477635	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10285.1	mRNA:Solyc03g118250.3.1	68652681	68652754	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10278.1	mRNA:Solyc03g118190.3.1	68618211	68618337	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29221.2	mRNA:Solyc11g013320.2.1	6298552	6298632	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g118425.1.1	CUFF.10300.3	68786525	68786591	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g118325.1.1	CUFF.10294.3	68722216	68722380	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10294.2	mRNA:Solyc03g118337.1.1	68724758	68724849	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g097070.2.1	CUFF.33104.2	66694443	66694540	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33114.1	mRNA:Solyc12g098195.1.1	66795035	66795072	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33116.1	mRNA:Solyc12g098230.1.1	66815994	66816238	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g098675.1.1	CUFF.33139.4	67090412	67090509	+	1^2-,0	intron retention
SL3.0ch03	CUFF.10237.1	mRNA:Solyc03g117780.2.1	68295642	68295730	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10235.1	mRNA:Solyc03g117710.2.1	68252189	68253660	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10235.2	mRNA:Solyc03g117710.2.1	68253710	68253739	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10233.1	mRNA:Solyc03g117680.3.1	68234662	68234940	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10233.1	mRNA:Solyc03g117680.3.1	68234253	68234356	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29342.1	mRNA:Solyc11g018600.1.1	8766874	8766962	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33129.1	mRNA:Solyc12g098470.2.1	66953725	66953849	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33129.1	mRNA:Solyc12g098470.2.1	66948039	66948283	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33120.1	mRNA:Solyc12g098360.2.1	66870428	66870485	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g117540.3.1	CUFF.10215.2	68157265	68157340	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g117470.3.1	mRNA:Solyc03g117480.3.1	68104487	68105355	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29310.2	mRNA:Solyc11g017320.2.1	8190303	8190317	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29310.1	mRNA:Solyc11g017310.2.1	8189324	8189396	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29310.1	mRNA:Solyc11g017325.1.1	8190779	8190832	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29312.1	mRNA:Solyc11g017330.1.1	8196580	8196966	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g117200.3.1	CUFF.10189.2	67888587	67889803	+	1^2-,0	intron retention
SL3.0ch12	CUFF.33155.1	mRNA:Solyc12g098870.2.1	67233279	67233352	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33160.1	mRNA:Solyc12g099010.2.1	67306326	67306408	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33160.3	mRNA:Solyc12g099020.2.1	67310577	67310733	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g061650.3.1	mRNA:Solyc08g061635.1.1	49352417	49352757	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g061880.2.1	CUFF.22217.4	49709118	49709205	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22222.1	CUFF.22222.2	49741016	49741450	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g062960.3.1	CUFF.22374.2	52443865	52444118	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10166.1	mRNA:Solyc03g116960.3.1	67720973	67721064	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g062915.1.1	mRNA:Solyc08g062920.3.1	52404502	52405409	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10168.1	CUFF.10168.2	67729286	67729831	-	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g116930.3.1	CUFF.10158.3	67688416	67688501	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10158.2	CUFF.10158.3	67688535	67688875	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10162.2	mRNA:Solyc03g116950.2.1	67714669	67714753	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33198.1	mRNA:Solyc12g099780.2.1	67765947	67766560	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33196.2	CUFF.33196.1	67751348	67751473	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33196.2	mRNA:Solyc12g099740.2.1	67738443	67738548	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10186.1	mRNA:Solyc03g117110.3.1	67843302	67843385	-	1^2-,0	intron retention
SL3.0ch03	CUFF.10178.1	mRNA:Solyc03g117020.3.1	67771928	67771993	+	1^2-,0	intron retention
SL3.0ch12	CUFF.33187.1	CUFF.33187.2	67610911	67611060	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33181.1	mRNA:Solyc12g099400.2.1	67543902	67543995	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g062800.3.1	CUFF.22357.2	52157041	52157073	+	1^2-,0	intron retention
SL3.0ch03	mRNA:Solyc03g116720.2.1	CUFF.10141.2	67492985	67493067	-	1^2-,0	intron retention
SL3.0ch12	CUFF.33169.1	mRNA:Solyc12g099175.1.1	67399422	67399435	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29415.1	mRNA:Solyc11g019950.2.1	9836661	9836690	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29418.1	mRNA:Solyc11g019970.2.1	9903886	9904286	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29418.1	mRNA:Solyc11g019970.2.1	9901916	9901991	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29407.2	mRNA:Solyc11g019920.2.1	9811159	9812047	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29407.2	mRNA:Solyc11g019935.1.1	9810867	9810960	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29371.1	CUFF.29371.2	9322248	9322361	+	1^2-,0	intron retention
SL3.0ch11	CUFF.29386.1	mRNA:Solyc11g018750.2.1	9364435	9364514	-	1^2-,0	intron retention
SL3.0ch11	CUFF.29386.1	mRNA:Solyc11g018750.2.1	9361729	9361826	-	1^2-,0	intron retention
SL3.0ch08	mRNA:Solyc08g062703.1.1	mRNA:Solyc08g062720.1.1	51885417	51885535	-	1^2-,0	intron retention
SL3.0ch08	CUFF.22320.1	mRNA:Solyc08g062650.2.1	51694719	51694804	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18258.1	mRNA:Solyc06g082490.3.1	48332620	48332742	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18284.1	mRNA:Solyc06g082760.3.1	48500277	48500389	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18178.1	mRNA:Solyc06g076480.3.1	47656757	47657781	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g031523.1.1	CUFF.24599.3	30816283	30816461	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18169.1	mRNA:Solyc06g076400.3.1	47614466	47614749	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18176.1	mRNA:Solyc06g076440.2.1	47638490	47638608	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18188.2	mRNA:Solyc06g076670.3.1	47756740	47757123	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18184.1	mRNA:Solyc06g076640.3.1	47735582	47735633	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18194.1	mRNA:Solyc06g076830.2.1	47863643	47863765	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24565.1	mRNA:Solyc09g031580.3.1	29875687	29875783	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g082000.3.1	CUFF.18206.2	47999920	48000005	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g082060.3.1	CUFF.18210.2	48047400	48049495	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g082155.1.1	CUFF.18224.2	48111704	48111745	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24643.1	mRNA:Solyc09g030385.1.1	32052944	32053288	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24643.2	CUFF.24643.4	32057926	32058202	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g082330.1.1	CUFF.18249.2	48232060	48232116	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18232.2	CUFF.18232.3	48147852	48147991	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18143.1	mRNA:Solyc06g075900.1.1	47279928	47280008	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18148.1	mRNA:Solyc06g076040.3.1	47354080	47354179	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24665.2	mRNA:Solyc09g048970.2.1	34669159	34669257	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18134.1	mRNA:Solyc06g075770.1.1	47229833	47229916	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18140.1	mRNA:Solyc06g075840.1.1	47259118	47259196	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18126.1	mRNA:Solyc06g075660.3.1	47161899	47162000	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18124.1	mRNA:Solyc06g075630.3.1	47149390	47149433	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18123.1	mRNA:Solyc06g075590.3.1	47128981	47129483	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18162.2	mRNA:Solyc06g076270.3.1	47532510	47532617	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18168.2	mRNA:Solyc06g076370.3.1	47591190	47591269	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18167.1	mRNA:Solyc06g076360.3.1	47587053	47587138	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g076250.3.1	mRNA:Solyc06g076257.1.1	47510999	47511104	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18154.1	mRNA:Solyc06g076200.1.1	47479630	47479698	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18057.1	mRNA:Solyc06g074770.3.1	46460156	46460277	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g074860.2.1	mRNA:Solyc06g074855.1.1	46532487	46532576	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g074990.2.1	CUFF.18075.2	46633376	46633429	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24745.1	mRNA:Solyc09g055570.3.1	42446812	42446882	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g074960.3.1	CUFF.18069.2	46606424	46606527	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g074960.3.1	CUFF.18069.2	46603388	46604697	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g074960.3.1	CUFF.18069.4	46611018	46611107	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24784.3	CUFF.24784.1	44274831	44274926	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24784.1	mRNA:Solyc09g055715.1.1	44275795	44275921	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18098.2	mRNA:Solyc06g075350.2.1	46917231	46917283	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g075410.3.1	CUFF.18101.2	46953132	46953171	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18103.1	mRNA:Solyc06g075470.2.1	46971628	46971639	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18103.1	mRNA:Solyc06g075480.3.1	46980525	46980572	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g075500.3.1	mRNA:Solyc06g075510.3.1	47001242	47001402	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g075510.3.1	CUFF.18107.3	47009406	47009500	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18102.1	mRNA:Solyc06g075420.1.1	46956496	46956614	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18116.1	mRNA:Solyc06g075540.3.1	47046725	47046798	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g075520.3.1	mRNA:Solyc06g075517.1.1	47041697	47042777	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g075130.3.1	CUFF.18083.2	46761064	46761143	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18096.1	mRNA:Solyc06g075335.1.1	46901891	46901979	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g075310.3.1	CUFF.18095.2	46892346	46892437	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18025.1	mRNA:Solyc06g074340.3.1	46101553	46101628	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18012.1	mRNA:Solyc06g074150.3.1	46002308	46002411	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g074220.3.1	CUFF.18017.2	46030436	46030530	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18006.1	mRNA:Solyc06g074010.3.1	45897546	45897759	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g006170.3.1	CUFF.26187.1	878494	878582	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26177.2	mRNA:Solyc10g006090.3.1	816083	816425	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g074410.3.1	CUFF.18027.2	46181560	46181658	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g074430.3.1	CUFF.18030.2	46211635	46211874	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26169.3	mRNA:Solyc10g005925.1.1	714018	714040	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26169.3	mRNA:Solyc10g005925.1.1	714887	715079	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g005950.3.1	mRNA:Solyc10g005955.1.1	725171	725346	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g005900.3.1	CUFF.26165.2	686791	686885	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g073980.3.1	CUFF.18002.2	45868594	45868668	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18001.1	mRNA:Solyc06g073970.2.1	45863812	45863859	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24873.2	mRNA:Solyc09g056270.2.1	48761646	48762358	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24873.2	mRNA:Solyc09g056270.2.1	48763227	48763309	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17999.1	mRNA:Solyc06g073940.3.1	45820567	45820613	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24835.1	mRNA:Solyc09g056040.3.1	46962228	46962324	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g005600.3.1	CUFF.26139.3	480228	480320	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26137.1	mRNA:Solyc10g005550.2.1	451544	451628	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24826.1	mRNA:Solyc09g056010.1.1	46889561	46889704	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26190.1	mRNA:Solyc10g006157.1.1	900401	900524	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26190.1	CUFF.26190.8	898974	899097	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g006190.3.1	CUFF.26190.8	900731	901665	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g006250.3.1	CUFF.26193.2	925309	925468	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26193.2	mRNA:Solyc10g006260.3.1	925559	925794	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6588.1	mRNA:Solyc02g083790.3.1	47618276	47618332	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24806.1	mRNA:Solyc09g055950.1.1	46493591	46493654	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24800.1	CUFF.24800.3	46294605	46294659	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24800.1	CUFF.24800.4	46295017	46295084	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24800.1	mRNA:Solyc09g055900.3.1	46299192	46299283	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g083527.1.1	CUFF.6564.2	47451421	47451568	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6552.1	mRNA:Solyc02g083345.1.1	47338534	47338615	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6535.1	mRNA:Solyc02g083120.2.1	47193188	47193431	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6532.1	mRNA:Solyc02g083080.1.1	47175947	47177011	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17926.1	mRNA:Solyc06g073120.3.1	45192448	45192583	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g073395.1.1	mRNA:Solyc06g073400.3.1	45373110	45373259	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17964.1	mRNA:Solyc06g073540.3.1	45482515	45482544	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26243.1	mRNA:Solyc10g006830.3.1	1271144	1272118	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26250.1	mRNA:Solyc10g006890.3.1	1316547	1316736	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26237.1	mRNA:Solyc10g006780.3.1	1215735	1215819	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g006810.3.1	mRNA:Solyc10g006820.3.1	1244140	1244225	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24928.1	mRNA:Solyc09g057760.3.1	50725001	50725200	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24928.1	CUFF.24928.3	50726357	50726515	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6443.2	mRNA:Solyc02g082170.2.1	46434388	46434434	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26211.1	mRNA:Solyc10g006550.2.1	1106198	1106931	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24907.1	mRNA:Solyc09g057580.3.1	50069944	50070057	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g057590.3.1	mRNA:Solyc09g057585.1.1	50082764	50082883	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6511.1	mRNA:Solyc02g082763.1.1	46976832	46976888	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6511.2	CUFF.6511.4	46975297	46975891	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6511.2	mRNA:Solyc02g082763.1.1	46977047	46977168	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6511.4	mRNA:Solyc02g082763.1.1	46977634	46977903	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6515.2	mRNA:Solyc02g082820.3.1	47027954	47028045	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6515.2	mRNA:Solyc02g082820.3.1	47029336	47029414	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g007250.1.1	CUFF.26276.3	1658494	1658591	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g082940.3.1	CUFF.6523.2	47114007	47114082	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26268.1	mRNA:Solyc10g007140.3.1	1530702	1530777	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26259.2	mRNA:Solyc10g007065.1.1	1449091	1449198	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g007103.1.1	CUFF.26264.2	1491429	1491490	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6490.3	CUFF.6490.1	46822450	46822741	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6490.1	mRNA:Solyc02g082620.1.1	46818589	46820240	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g082540.3.1	CUFF.6484.2	46767788	46767861	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6504.1	mRNA:Solyc02g082720.3.1	46920745	46920841	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g057520.2.1	mRNA:Solyc09g057530.1.1	49724674	49724923	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g082660.3.1	CUFF.6497.2	46865961	46866047	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g082617.1.1	CUFF.6496.4	46854376	46855491	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6496.4	CUFF.6496.3	46852938	46853686	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24896.2	mRNA:Solyc09g056430.3.1	49334431	49334513	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17980.1	mRNA:Solyc06g073720.2.1	45622211	45622268	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17987.2	mRNA:Solyc06g073810.3.1	45698653	45698739	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g073780.3.1	CUFF.17983.3	45670895	45670968	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6473.1	mRNA:Solyc02g082410.3.1	46658785	46658803	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6475.1	CUFF.6475.2	46683814	46683889	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6475.2	mRNA:Solyc02g082435.1.1	46683847	46683889	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g082360.3.1	CUFF.6463.2	46610089	46610327	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17890.1	mRNA:Solyc06g072680.3.1	44961016	44961104	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g072590.3.1	CUFF.17883.2	44912441	44912553	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17881.1	mRNA:Solyc06g072530.3.1	44884467	44884548	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g072500.2.1	CUFF.17880.3	44857291	44857371	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17875.1	mRNA:Solyc06g072430.2.1	44825698	44825950	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17871.1	mRNA:Solyc06g072407.1.1	44806860	44806902	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17870.1	mRNA:Solyc06g072370.3.1	44785230	44785288	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26311.1	mRNA:Solyc10g007590.3.1	1882050	1882136	-	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g007520.2.1	CUFF.26307.2	1837731	1837887	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26303.1	mRNA:Solyc10g007460.3.1	1804273	1804415	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g007430.2.1	CUFF.26302.2	1786705	1786782	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26308.1	mRNA:Solyc10g007570.3.1	1863558	1863644	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g081840.3.1	CUFF.6413.2	46189350	46189408	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6410.1	mRNA:Solyc02g081810.3.1	46173719	46173822	+	1^2-,0	intron retention
SL3.0ch09	CUFF.24979.1	mRNA:Solyc09g057900.2.1	52326715	52326948	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6408.2	mRNA:Solyc02g081740.2.1	46127024	46127122	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g081620.3.1	CUFF.6396.2	46065991	46066691	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6442.1	mRNA:Solyc02g082155.1.1	46423486	46423798	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g082070.3.1	CUFF.6429.2	46358266	46358349	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6432.1	mRNA:Solyc02g082110.3.1	46384218	46384351	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24996.1	CUFF.24996.2	53242648	53242922	-	1^2-,0	intron retention
SL3.0ch09	CUFF.24996.2	mRNA:Solyc09g059030.3.1	53242648	53242921	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6423.1	mRNA:Solyc02g081960.3.1	46272427	46272594	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17912.1	mRNA:Solyc06g072845.1.1	45070257	45070345	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17914.2	CUFF.17914.3	45087470	45087615	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17914.2	mRNA:Solyc06g072900.3.1	45087645	45087786	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17917.1	mRNA:Solyc06g072940.2.1	45102225	45102313	+	1^2-,0	intron retention
SL3.0ch06	CUFF.17917.1	mRNA:Solyc06g072940.2.1	45103644	45103820	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g072940.2.1	CUFF.17917.3	45103446	45103537	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g072930.4.1	CUFF.17915.2	45096725	45096818	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g072780.2.1	CUFF.17897.2	45020368	45021040	-	1^2-,0	intron retention
SL3.0ch06	CUFF.17898.2	mRNA:Solyc06g072790.3.1	45035315	45035387	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25071.1	mRNA:Solyc09g059583.1.1	55135692	55135813	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g059560.2.1	mRNA:Solyc09g059550.1.1	55083923	55084263	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25029.1	mRNA:Solyc09g059280.2.1	54397034	54397088	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g059460.3.1	CUFF.25042.2	54764268	54764311	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25043.2	mRNA:Solyc09g059473.1.1	54768450	54768833	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25036.1	mRNA:Solyc09g059390.2.1	54616861	54617105	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g086730.2.1	mRNA:Solyc02g086740.1.1	50001367	50001473	+	1^2-,0	intron retention
SL3.0ch01	CUFF.1947.1	mRNA:Solyc01g065495.1.1	71549664	71549774	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g060460.2.1	CUFF.1944.2	70967658	70967983	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g086560.3.1	mRNA:Solyc02g086570.2.1	49863535	49863618	+	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g117655.1.1	mRNA:Solyc00g118690.1.1	15446463	15446509	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6871.1	mRNA:Solyc02g086625.1.1	49923265	49923905	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6871.2	mRNA:Solyc02g086625.1.1	49924032	49926044	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6871.2	mRNA:Solyc02g086630.2.1	49929654	49929736	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g065800.1.1	CUFF.1991.1	72218493	72218961	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25155.2	mRNA:Solyc09g061460.2.1	59392385	59392439	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6821.1	mRNA:Solyc02g086315.1.1	49644119	49644145	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6835.2	CUFF.6835.1	49714062	49714120	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6844.1	mRNA:Solyc02g086440.3.1	49746705	49746788	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6832.2	CUFF.6832.1	49695423	49695679	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g086400.2.1	CUFF.6831.3	49692022	49692052	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g086400.2.1	CUFF.6831.4	49692492	49692567	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6828.3	mRNA:Solyc02g086390.1.1	49680889	49681665	-	1^2-,0	intron retention
SL3.0ch00	CUFF.262.1	mRNA:Solyc00g098560.3.1	14737861	14737962	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25182.1	mRNA:Solyc09g061790.1.1	60561175	60561371	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g061827.1.1	CUFF.25187.3	60653078	60653090	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25183.1	mRNA:Solyc09g061793.1.1	60566321	60566419	-	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g094420.2.1	CUFF.32988.2	65619539	65619875	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6759.3	mRNA:Solyc02g085837.1.1	49269455	49269475	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6767.1	mRNA:Solyc02g085880.2.1	49305989	49306058	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6767.1	mRNA:Solyc02g085880.2.1	49306920	49307006	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25177.2	mRNA:Solyc09g061630.2.1	60365646	60365727	+	1^2-,0	intron retention
SL3.0ch12	mRNA:Solyc12g094490.2.1	CUFF.32993.2	65692072	65692136	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6747.2	mRNA:Solyc02g085670.3.1	49136789	49136888	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g063025.1.1	CUFF.25213.2	61183586	61183832	-	1^2-,0	intron retention
SL3.0ch00	CUFF.285.1	mRNA:Solyc00g125990.2.1	15684490	15684578	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6740.1	mRNA:Solyc02g085620.3.1	49081364	49081436	-	1^2-,0	intron retention
SL3.0ch00	CUFF.303.1	mRNA:Solyc00g142170.3.1	16202812	16203167	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g085560.3.1	CUFF.6730.2	49025043	49025951	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25227.1	mRNA:Solyc09g064320.3.1	61719415	61719494	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g066830.3.1	CUFF.2091.2	74834417	74834563	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g066830.3.1	CUFF.2091.2	74829811	74829897	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6670.1	mRNA:Solyc02g084680.2.1	48415597	48416000	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6678.1	mRNA:Solyc02g084800.3.1	48525962	48525994	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g064430.3.1	CUFF.25235.2	61883821	61884565	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g084840.3.1	CUFF.6681.2	48558795	48558850	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6679.3	mRNA:Solyc02g084830.3.1	48555453	48555553	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6683.1	mRNA:Solyc02g084890.2.1	48590665	48590698	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g064590.3.1	CUFF.25252.2	62142053	62142149	+	1^2-,0	intron retention
SL3.0ch09	CUFF.25255.3	mRNA:Solyc09g064600.3.1	62154855	62155068	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25255.3	mRNA:Solyc09g064610.3.1	62156777	62156853	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25255.3	mRNA:Solyc09g064610.3.1	62156047	62156188	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25255.2	mRNA:Solyc09g064610.3.1	62157206	62157306	-	1^2-,0	intron retention
SL3.0ch09	CUFF.25255.2	mRNA:Solyc09g064610.3.1	62156539	62156605	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6694.1	mRNA:Solyc02g085035.1.1	48695889	48695963	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g064670.2.1	CUFF.25266.3	62246721	62247239	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2114.1	mRNA:Solyc01g067090.3.1	75243794	75243866	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g085140.3.1	CUFF.6700.2	48758047	48758173	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6699.2	mRNA:Solyc02g085130.3.1	48748585	48749134	+	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g064790.3.1	CUFF.25281.2	62435226	62436257	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6713.1	mRNA:Solyc02g085290.3.1	48871313	48871418	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6713.2	mRNA:Solyc02g085290.3.1	48872116	48872889	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g064860.3.1	CUFF.25288.2	62578331	62578407	-	1^2-,0	intron retention
SL3.0ch09	mRNA:Solyc09g064920.3.1	CUFF.25294.2	62676146	62676251	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6723.2	mRNA:Solyc02g085420.3.1	48964426	48964525	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6724.2	mRNA:Solyc02g085440.3.1	48975895	48975954	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6727.1	mRNA:Solyc02g085490.2.1	48997424	48997492	-	1^2-,0	intron retention
SL3.0ch00	CUFF.339.1	mRNA:Solyc00g181250.2.1	17363441	17363493	+	1^2-,0	intron retention
SL3.0ch00	CUFF.337.2	mRNA:Solyc00g180840.2.1	17351144	17351240	+	1^2-,0	intron retention
SL3.0ch00	CUFF.354.1	mRNA:Solyc00g215560.2.1	18290665	18290830	+	1^2-,0	intron retention
SL3.0ch00	CUFF.354.1	mRNA:Solyc00g215560.2.1	18291429	18291529	+	1^2-,0	intron retention
SL3.0ch00	CUFF.346.1	mRNA:Solyc00g188857.1.1	17776905	17776992	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g067215.1.1	mRNA:Solyc01g067250.3.1	75448740	75448754	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2134.1	mRNA:Solyc01g067190.1.1	75428183	75428297	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g067160.3.1	CUFF.2126.2	75383892	75384306	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2126.2	mRNA:Solyc01g067165.1.1	75388622	75388702	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g065910.1.1	CUFF.2000.2	72389032	72389097	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6601.1	mRNA:Solyc02g084037.1.1	47813922	47813957	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2018.2	mRNA:Solyc01g066120.2.1	72966904	72966981	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2013.1	mRNA:Solyc01g066020.2.1	72699869	72699915	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6624.1	CUFF.6624.2	47913109	47913896	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6624.2	mRNA:Solyc02g084167.1.1	47918684	47918764	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6624.2	mRNA:Solyc02g084190.2.1	47925960	47926021	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6626.1	mRNA:Solyc02g084230.2.1	47945113	47945162	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6638.1	mRNA:Solyc02g084300.1.1	47998711	47998830	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6638.2	mRNA:Solyc02g084315.1.1	48004454	48004523	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6638.2	mRNA:Solyc02g084315.1.1	48005365	48005568	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6633.1	CUFF.6633.2	47986826	47987191	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6633.2	mRNA:Solyc02g084280.3.1	47989892	47990500	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6633.2	mRNA:Solyc02g084285.1.1	47994273	47994540	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6602.1	CUFF.6602.3	47833635	47833777	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6609.1	mRNA:Solyc02g084120.2.1	47869147	47869289	-	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g066310.3.1	CUFF.2037.2	73773339	73773453	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6621.4	CUFF.6621.5	47906383	47906737	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6621.4	CUFF.6621.5	47903531	47903649	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6621.5	mRNA:Solyc02g084163.1.1	47906789	47906905	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g084150.1.1	CUFF.6618.2	47894006	47894135	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g084117.1.1	CUFF.6614.4	47875960	47878938	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6657.2	mRNA:Solyc02g084540.3.1	48268984	48269315	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g084450.3.1	CUFF.6648.2	48095190	48095288	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g084450.3.1	CUFF.6648.2	48099872	48099928	+	1^2-,0	intron retention
SL3.0ch00	CUFF.391.1	mRNA:Solyc00g294237.1.1	20272280	20272334	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26099.2	mRNA:Solyc10g005000.3.1	5669	5748	-	1^2-,0	intron retention
SL3.0ch10	CUFF.26100.1	mRNA:Solyc10g005030.3.1	42542	42564	+	1^2-,0	intron retention
SL3.0ch10	CUFF.26110.2	mRNA:Solyc10g005130.3.1	122549	122618	+	1^2-,0	intron retention
SL3.0ch10	mRNA:Solyc10g005220.3.1	CUFF.26113.1	176250	176377	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2053.1	mRNA:Solyc01g066453.1.1	74230954	74230995	+	1^2-,0	intron retention
SL3.0ch01	CUFF.2059.1	CUFF.2059.2	74308154	74308950	-	1^2-,0	intron retention
SL3.0ch01	CUFF.2058.1	mRNA:Solyc01g066490.2.1	74301529	74301716	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13190.1	mRNA:Solyc04g079800.3.1	64209171	64209256	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13189.1	mRNA:Solyc04g079780.3.1	64200622	64200708	-	1^2-,0	intron retention
SL3.0ch00	CUFF.166.2	mRNA:Solyc00g023700.2.1	11197273	11197360	+	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g024160.2.1	CUFF.168.2	11229973	11230062	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7075.1	mRNA:Solyc02g089120.3.1	51647537	51647623	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7085.2	mRNA:Solyc02g089205.1.1	51716458	51716521	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7062.1	mRNA:Solyc02g088983.1.1	51543489	51543674	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g088987.1.1	CUFF.7065.2	51546415	51546474	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g089020.2.1	CUFF.7069.2	51566705	51566797	+	1^2-,0	intron retention
SL3.0ch00	CUFF.158.1	mRNA:Solyc00g022107.1.1	11062223	11062253	-	1^2-,0	intron retention
SL3.0ch00	CUFF.157.1	mRNA:Solyc00g022070.1.1	11053630	11053716	+	1^2-,0	intron retention
SL3.0ch00	CUFF.155.1	CUFF.155.4	11017894	11018210	-	1^2-,0	intron retention
SL3.0ch00	CUFF.155.3	CUFF.155.4	11017530	11017891	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7045.2	CUFF.7045.3	51496969	51497079	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7045.2	CUFF.7045.3	51501213	51501249	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7045.2	CUFF.7045.4	51502277	51502326	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7045.3	CUFF.7045.4	51501981	51502156	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7051.1	mRNA:Solyc02g088950.2.1	51514355	51514918	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7051.1	mRNA:Solyc02g088954.1.1	51514938	51515170	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7038.1	CUFF.7038.2	51332611	51332710	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g088780.3.1	mRNA:Solyc02g088770.3.1	51371886	51371965	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13176.1	mRNA:Solyc04g079510.2.1	64045005	64045082	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13178.1	mRNA:Solyc04g079550.3.1	64059531	64059599	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g088570.2.1	CUFF.7027.2	51261715	51261792	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7023.1	mRNA:Solyc02g088517.1.1	51228274	51228437	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g079280.3.1	mRNA:Solyc04g079290.3.1	63884735	63884847	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13174.1	mRNA:Solyc04g079450.3.1	64032315	64032356	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13489.1	mRNA:Solyc05g005780.3.1	593228	593252	+	1^2-,0	intron retention
SL3.0ch05	mRNA:Solyc05g005760.3.1	CUFF.13486.2	584975	585075	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13484.1	mRNA:Solyc05g005730.3.1	538910	538982	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13481.1	mRNA:Solyc05g005685.1.1	508877	508944	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13139.1	mRNA:Solyc04g078970.2.1	63685822	63685976	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g078840.3.1	CUFF.13125.2	63589849	63589974	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g078870.3.1	CUFF.13131.4	63627246	63627339	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13130.1	mRNA:Solyc04g078860.3.1	63609170	63610664	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13465.1	mRNA:Solyc05g005450.2.1	335400	335472	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13477.1	mRNA:Solyc05g005640.3.1	467525	467672	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13472.1	mRNA:Solyc05g005620.3.1	437648	438415	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13479.1	mRNA:Solyc05g005650.2.1	477217	477261	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13441.1	mRNA:Solyc05g005125.1.1	118211	118253	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13441.1	mRNA:Solyc05g005130.2.1	119336	119377	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13439.1	mRNA:Solyc05g005060.3.1	68037	68135	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13262.1	mRNA:Solyc04g080580.3.1	64785122	64785205	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13262.1	mRNA:Solyc04g080580.3.1	64787041	64787133	+	1^2-,0	intron retention
SL3.0ch05	CUFF.13448.1	mRNA:Solyc05g005260.2.1	209592	209689	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13450.1	mRNA:Solyc05g005300.2.1	240655	240740	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g080670.3.1	CUFF.13266.2	64865465	64865551	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7018.4	CUFF.7018.5	51178546	51178848	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7018.5	CUFF.7018.6	51177707	51178467	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7018.5	mRNA:Solyc02g088427.1.1	51178906	51179168	+	1^2-,0	intron retention
SL3.0ch02	CUFF.7012.1	mRNA:Solyc02g088380.3.1	51119877	51120064	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7014.1	CUFF.7014.2	51126366	51127621	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7014.3	CUFF.7014.2	51128798	51130878	-	1^2-,0	intron retention
SL3.0ch02	CUFF.7014.2	mRNA:Solyc02g088395.1.1	51130963	51131049	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6971.1	mRNA:Solyc02g087780.3.1	50716587	50716684	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g088060.2.1	CUFF.6983.3	50900969	50901035	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g088070.3.1	mRNA:Solyc02g088075.1.1	50907700	50908104	+	1^2-,0	intron retention
SL3.0ch00	CUFF.180.1	mRNA:Solyc00g032947.1.1	11829114	11829380	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6995.2	mRNA:Solyc02g088205.1.1	51006507	51006611	-	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g079850.2.1	CUFF.13195.3	64255048	64255115	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13199.1	mRNA:Solyc04g079920.3.1	64332158	64332288	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13199.1	mRNA:Solyc04g079920.3.1	64334121	64334317	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g079950.3.1	CUFF.13203.2	64358170	64358244	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g080090.3.1	CUFF.13219.2	64456221	64456348	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18426.1	mRNA:Solyc06g084410.3.1	49578724	49578820	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13236.2	mRNA:Solyc04g080240.3.1	64569106	64569215	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18419.1	mRNA:Solyc06g084330.3.1	49534321	49534435	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g080170.3.1	mRNA:Solyc04g080175.1.1	64514461	64514604	-	1^2-,0	intron retention
SL3.0ch05	CUFF.13437.1	mRNA:Solyc05g005000.3.1	4333	4563	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18443.1	mRNA:Solyc06g084590.3.1	49704294	49704308	+	1^2-,0	intron retention
SL3.0ch04	CUFF.13247.1	mRNA:Solyc04g080360.3.1	64656536	64656786	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g084270.3.1	CUFF.18411.2	49514484	49514589	+	1^2-,0	intron retention
SL3.0ch06	CUFF.18401.2	mRNA:Solyc06g084120.3.1	49391874	49391981	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13341.1	mRNA:Solyc04g081610.1.1	65638516	65638561	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18393.1	mRNA:Solyc06g083980.2.1	49307162	49307235	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13334.1	mRNA:Solyc04g081460.2.1	65513020	65513094	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18395.1	mRNA:Solyc06g084020.3.1	49330797	49331014	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g083920.3.1	CUFF.18385.2	49265033	49265141	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6946.2	mRNA:Solyc02g087580.3.1	50608669	50608846	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6949.1	mRNA:Solyc02g087620.3.1	50622905	50623002	+	1^2-,0	intron retention
SL3.0ch00	CUFF.241.1	mRNA:Solyc00g075035.1.1	13828455	13828666	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6897.1	mRNA:Solyc02g086910.3.1	50136112	50136222	-	1^2-,0	intron retention
SL3.0ch02	CUFF.6894.1	mRNA:Solyc02g086860.3.1	50100850	50100946	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g087050.2.1	mRNA:Solyc02g087060.3.1	50223324	50223400	+	1^2-,0	intron retention
SL3.0ch00	CUFF.214.1	mRNA:Solyc00g052540.1.1	12815288	12815640	-	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g087310.3.1	CUFF.6926.2	50392102	50392177	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g087310.3.1	CUFF.6926.2	50392829	50392918	+	1^2-,0	intron retention
SL3.0ch00	mRNA:Solyc00g069880.2.1	CUFF.234.4	13595630	13595948	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6906.1	mRNA:Solyc02g087100.1.1	50254636	50254696	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6904.4	mRNA:Solyc02g087070.3.1	50239683	50239720	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6904.2	CUFF.6904.3	50250463	50250537	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6904.3	mRNA:Solyc02g087090.3.1	50250975	50251050	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6904.3	mRNA:Solyc02g087090.3.1	50251311	50251336	+	1^2-,0	intron retention
SL3.0ch02	CUFF.6917.1	mRNA:Solyc02g087180.3.1	50297181	50298289	+	1^2-,0	intron retention
SL3.0ch02	mRNA:Solyc02g087220.3.1	mRNA:Solyc02g087215.1.1	50312570	50312673	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13290.1	mRNA:Solyc04g080890.3.1	65023334	65023426	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g083790.3.1	CUFF.18374.2	49153557	49153635	+	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g083860.2.1	CUFF.18382.2	49205426	49205483	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18361.1	CUFF.18361.2	49029475	49029684	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18361.2	mRNA:Solyc06g083640.3.1	49030512	49030612	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18361.2	mRNA:Solyc06g083640.3.1	49029840	49029873	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18354.1	mRNA:Solyc06g083630.3.1	49022304	49022327	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g083590.3.1	mRNA:Solyc06g083595.1.1	48992124	48992144	-	1^2-,0	intron retention
SL3.0ch06	mRNA:Solyc06g083530.3.1	mRNA:Solyc06g083535.1.1	48967656	48968088	+	1^2-,0	intron retention
SL3.0ch04	mRNA:Solyc04g080950.3.1	CUFF.13306.2	65096997	65097886	-	1^2-,0	intron retention
SL3.0ch04	CUFF.13307.1	mRNA:Solyc04g080970.3.1	65114880	65114968	-	1^2-,0	intron retention
SL3.0ch06	CUFF.18330.2	mRNA:Solyc06g083425.1.1	48885411	48885723	+	1^2-,0	intron retention
SL3.0ch01	mRNA:Solyc01g008480.3.1	CUFF.640.2	2507374	2507651	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.640.2	mRNA:Solyc01g008485.1.1	2509589	2509795	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.645.1	mRNA:Solyc01g008497.1.1	2544612	2545349	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.24177.1	mRNA:Solyc09g018060.3.1	12717037	12717537	-	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g016950.3.1	CUFF.24153.2	11864457	11867083	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.14965.1	CUFF.14965.5	49934325	49935012	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.30995.1	mRNA:Solyc12g006700.2.1	1165161	1166289	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.23958.1	mRNA:Solyc09g014215.1.1	5710330	5710947	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.23957.1	mRNA:Solyc09g014210.2.1	5707460	5707665	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.15152.1	mRNA:Solyc05g043390.2.1	57131449	57131849	-	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g011370.2.1	CUFF.23901.3	4705556	4706314	+	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g010913.1.1	CUFF.23870.4	4252961	4255212	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.15336.1	mRNA:Solyc05g050390.3.1	61355797	61355926	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g010130.3.1	mRNA:Solyc01g010135.1.1	4806119	4806445	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.786.1	mRNA:Solyc01g010510.3.1	5453348	5455445	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.800.1	mRNA:Solyc01g010720.3.1	5693630	5693880	-	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.15308.2	CUFF.15308.3	60461768	60462065	-	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g028915.1.1	mRNA:Solyc08g028900.1.1	39213061	39213211	+	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g029150.2.1	CUFF.21990.4	38125665	38127167	-	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g029150.2.1	CUFF.21990.3	38124861	38124985	-	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g029220.2.1	CUFF.21968.3	37503116	37503364	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28476.2	mRNA:Solyc10g085070.2.1	64513347	64515375	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g017183.1.1	CUFF.1177.4	23806314	23806576	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28492.1	mRNA:Solyc10g085410.2.1	64730268	64731549	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28492.1	mRNA:Solyc10g085420.2.1	64733027	64734020	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g085930.2.1	CUFF.28529.2	65065286	65066829	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.945.1	mRNA:Solyc01g014103.1.1	11581762	11582015	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.962.1	mRNA:Solyc01g014143.1.1	11647923	11648342	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.970.1	mRNA:Solyc01g014245.1.1	11867004	11868961	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28348.1	mRNA:Solyc10g083380.2.1	63331057	63333475	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.21731.1	CUFF.21731.4	24001073	24001331	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.1054.1	mRNA:Solyc01g014840.3.1	15505513	15507158	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19845.1	mRNA:Solyc07g042290.2.1	55539145	55539327	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19838.1	mRNA:Solyc07g042260.3.1	55486526	55487345	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28400.1	mRNA:Solyc10g084045.1.1	63840834	63842265	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28403.2	mRNA:Solyc10g084085.1.1	63875946	63876731	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28395.1	mRNA:Solyc10g084023.1.1	63820659	63820969	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19882.1	mRNA:Solyc07g042600.2.1	56197006	56197719	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28431.1	mRNA:Solyc10g084440.2.1	64100352	64100514	+	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g006130.2.1	CUFF.28673.1	893487	897143	-	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g006245.1.1	CUFF.28687.3	997212	997324	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.28686.1	mRNA:Solyc11g006210.2.1	958557	959002	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19608.1	mRNA:Solyc07g039410.3.1	47549309	47549822	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6381.2	mRNA:Solyc02g081485.1.1	45986990	45988223	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.28730.1	mRNA:Solyc11g006740.2.1	1346138	1347582	+	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g048410.2.1	CUFF.21558.2	13094936	13095247	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.21573.1	mRNA:Solyc08g048370.3.1	13397079	13397560	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g040660.3.1	CUFF.19659.3	49383593	49384218	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6288.2	mRNA:Solyc02g080165.1.1	45028007	45028930	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.28781.1	mRNA:Solyc11g007345.1.1	1721956	1722756	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.21569.1	mRNA:Solyc08g048390.2.1	13157831	13158059	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.21514.1	mRNA:Solyc08g036625.1.1	10671635	10672113	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19449.2	mRNA:Solyc07g032020.2.1	33700544	33702589	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19391.2	mRNA:Solyc07g026720.2.1	30493838	30494344	-	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g026930.2.1	CUFF.19439.2	32615788	32616158	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.28590.1	mRNA:Solyc11g005020.2.1	42114	42281	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.24482.1	mRNA:Solyc09g042660.3.1	24957526	24958102	-	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g005015.1.1	CUFF.28583.4	27480	27767	-	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g086690.2.1	CUFF.28574.2	65582271	65583106	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g086690.2.1	CUFF.28574.2	65583760	65584011	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g086690.2.1	CUFF.28574.3	65584505	65584781	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.21435.1	mRNA:Solyc08g016215.1.1	7097323	7097674	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.24346.2	mRNA:Solyc09g020010.2.1	18317325	18319675	-	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g053585.1.1	CUFF.20319.6	62135520	62135893	+	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g033850.3.1	CUFF.16510.2	23375412	23375989	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g053580.2.1	CUFF.20319.3	62132586	62132767	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g053580.2.1	CUFF.20319.4	62132420	62132526	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20312.1	mRNA:Solyc07g053495.1.1	62066059	62066424	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20250.2	mRNA:Solyc07g052740.3.1	61325413	61326396	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20257.3	CUFF.20257.2	61385109	61386148	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20295.1	mRNA:Solyc07g053250.3.1	61853005	61857447	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g053080.3.1	CUFF.20278.2	61646236	61646657	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20277.1	mRNA:Solyc07g053055.1.1	61633718	61634351	-	1^2-3^4-,0	complex events
SL3.0ch00	CUFF.78.2	CUFF.78.1	7801085	7801612	-	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g051940.3.1	CUFF.20194.2	60621088	60621645	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6111.2	CUFF.6111.1	43311339	43312295	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20214.2	CUFF.20214.1	60896079	60896466	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20237.1	mRNA:Solyc07g052560.2.1	61175245	61175892	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20134.1	mRNA:Solyc07g049390.2.1	59791021	59791204	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20110.1	CUFF.20112.1	59624948	59627935	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g094000.3.1	CUFF.9280.2	57142595	57143016	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6192.1	mRNA:Solyc02g078980.3.1	44145140	44146413	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.4371.2	mRNA:Solyc01g111920.3.1	98001811	98002618	+	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g018004.1.1	CUFF.16407.2	16149759	16150874	-	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g079630.2.1	CUFF.6250.2	44696847	44697158	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6221.2	CUFF.6221.3	44421131	44421859	-	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g045510.3.1	CUFF.20042.2	58755466	58756966	-	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g047620.2.1	CUFF.20054.3	58987916	58989603	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.4320.2	mRNA:Solyc01g111190.3.1	97447115	97448374	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g095870.2.1	CUFF.9363.3	58970964	58971392	+	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g007690.2.1	CUFF.28804.2	1933936	1934171	+	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g007640.1.1	CUFF.28799.3	1873708	1874520	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g095620.3.1	mRNA:Solyc03g095615.1.1	58218122	58220124	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5773.1	mRNA:Solyc02g069935.1.1	40281505	40281831	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19976.1	mRNA:Solyc07g044793.1.1	57964378	57964882	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5723.1	mRNA:Solyc02g069350.3.1	39840972	39841441	+	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g011374.1.1	CUFF.16298.3	6869247	6870245	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.16323.1	CUFF.16323.2	8019444	8020830	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g042930.3.1	CUFF.19917.1	56611206	56611851	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5837.1	mRNA:Solyc02g070720.1.1	40935888	40937295	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5839.1	mRNA:Solyc02g070730.1.1	40937442	40938146	-	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g060670.3.1	CUFF.17312.2	38806418	38807449	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19960.1	mRNA:Solyc07g043395.1.1	57237056	57237411	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19951.1	mRNA:Solyc07g043260.3.1	57047637	57047852	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17297.2	mRNA:Solyc06g060540.3.1	38673174	38673766	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22074.1	mRNA:Solyc08g059760.3.1	45300034	45302728	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22058.1	mRNA:Solyc08g059660.2.1	44524691	44525236	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.16084.1	mRNA:Solyc06g008720.3.1	2627893	2628072	-	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g071660.3.1	CUFF.5927.2	41603549	41607524	+	1^2-3^4-,0	complex events
SL3.0ch00	CUFF.122.1	mRNA:Solyc00g013140.2.1	9736084	9737392	-	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g064870.3.1	CUFF.17478.2	40555144	40555530	+	1^2-3^4-,0	complex events
SL3.0ch00	mRNA:Solyc00g012708.1.1	CUFF.118.2	9707640	9707828	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17483.2	mRNA:Solyc06g064895.1.1	40571678	40571989	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g071685.1.1	CUFF.5934.3	41622269	41622681	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17435.1	mRNA:Solyc06g063110.2.1	39979818	39980023	-	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g006170.2.1	mRNA:Solyc12g006175.1.1	718807	719008	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.30938.1	mRNA:Solyc12g005970.1.1	594257	596107	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5986.2	mRNA:Solyc02g072397.1.1	42191849	42192238	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5991.1	mRNA:Solyc02g072470.3.1	42232530	42232914	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22185.1	mRNA:Solyc08g061450.2.1	48772608	48772945	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5950.1	CUFF.5950.4	41770366	41770833	-	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g073255.1.1	CUFF.30867.2	56572159	56573054	-	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g073110.2.1	CUFF.30855.2	56499229	56499460	-	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g066670.3.1	CUFF.17608.3	42006940	42007365	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.15875.1	mRNA:Solyc06g005220.2.1	241353	243192	-	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g050810.3.1	CUFF.15390.5	61845240	61845699	+	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g005680.3.1	CUFF.15918.2	748177	748921	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30769.1	mRNA:Solyc11g072055.1.1	55632984	55633879	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30830.1	mRNA:Solyc11g072730.2.1	56219474	56219548	-	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g051990.3.1	mRNA:Solyc05g051992.1.1	63185346	63185801	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30723.3	CUFF.30723.5	55200264	55200438	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30742.1	mRNA:Solyc11g071580.2.1	55305520	55306346	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30732.2	mRNA:Solyc11g071500.2.1	55245197	55249369	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30737.2	mRNA:Solyc11g071575.1.1	55300068	55300299	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17769.1	mRNA:Solyc06g069700.3.1	43530837	43531234	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g113790.3.1	CUFF.9861.2	65319580	65319748	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9858.1	mRNA:Solyc03g113750.2.1	65296904	65297420	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g113950.3.1	CUFF.9876.2	65488072	65488649	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g113990.3.1	mRNA:Solyc03g113995.1.1	65522515	65524676	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17801.1	mRNA:Solyc06g071280.3.1	43994228	43994469	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17804.1	mRNA:Solyc06g071337.1.1	44046512	44047174	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9885.1	mRNA:Solyc03g114010.2.1	65537902	65538738	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17734.2	mRNA:Solyc06g069350.2.1	43213167	43218019	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30582.1	mRNA:Solyc11g068880.2.1	53750538	53751142	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g108970.3.1	CUFF.4140.2	95991023	95991662	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.4150.1	mRNA:Solyc01g109060.3.1	96027494	96028903	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.4143.2	mRNA:Solyc01g108973.1.1	95995987	95996108	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g108977.1.1	CUFF.4145.2	96007659	96008277	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.4144.2	mRNA:Solyc01g108975.1.1	96011428	96012146	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9669.1	mRNA:Solyc03g111420.2.1	63506728	63507232	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9669.1	mRNA:Solyc03g111425.1.1	63507927	63508602	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g111385.1.1	mRNA:Solyc03g111390.3.1	63464966	63465797	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9731.1	mRNA:Solyc03g112010.3.1	64046147	64046606	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30547.1	mRNA:Solyc11g067310.2.1	53342208	53342661	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30550.1	mRNA:Solyc11g068360.1.1	53403285	53403853	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9763.1	mRNA:Solyc03g112420.2.1	64307005	64307816	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17846.2	CUFF.17846.1	44527935	44528918	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17846.1	mRNA:Solyc06g072012.1.1	44527665	44527801	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17846.1	mRNA:Solyc06g072016.1.1	44529894	44530236	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9805.1	CUFF.9805.2	64799108	64799693	-	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g071640.3.1	mRNA:Solyc06g071655.1.1	44266908	44268110	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17811.2	mRNA:Solyc06g071490.2.1	44138642	44138909	-	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g066660.2.1	CUFF.30480.1	52725739	52728091	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.4009.1	mRNA:Solyc01g107300.3.1	94784660	94784981	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9520.1	mRNA:Solyc03g097860.1.1	61619308	61619570	+	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g066210.2.1	mRNA:Solyc11g066203.1.1	52212360	52212751	-	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g065890.2.1	CUFF.30427.2	51773083	51773896	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.4034.1	mRNA:Solyc01g107690.3.1	95042258	95042794	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.4041.1	mRNA:Solyc01g107850.3.1	95143104	95143238	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.4041.1	mRNA:Solyc01g107857.1.1	95143987	95144375	+	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g065255.1.1	CUFF.30378.2	50923885	50924506	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30381.2	mRNA:Solyc11g065340.2.1	51057670	51058888	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g108410.2.1	CUFF.4095.4	95648135	95651874	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.31817.2	mRNA:Solyc12g070113.1.1	29623497	29623618	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.31817.2	mRNA:Solyc12g070117.1.1	29625449	29625609	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.27529.1	mRNA:Solyc10g050095.1.1	47714049	47714241	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g049570.2.1	CUFF.27450.2	46078549	46078724	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g049533.1.1	CUFF.27447.2	45997907	45999568	-	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g032933.1.1	CUFF.31981.1	37291347	37291594	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32048.1	mRNA:Solyc12g035430.1.1	40384799	40385239	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19125.2	CUFF.19125.4	14337877	14338281	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g053027.1.1	CUFF.8474.2	23882934	23883161	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.14384.1	CUFF.14384.3	20714269	20715243	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.14382.1	mRNA:Solyc05g018350.3.1	20603920	20604626	-	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g017785.1.1	CUFF.14308.3	18363648	18364734	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.8427.1	CUFF.8427.2	20424129	20425904	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g089290.3.1	CUFF.7092.2	51797553	51798318	-	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g089600.3.1	mRNA:Solyc02g089605.1.1	52004745	52005015	+	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g020120.2.1	CUFF.31629.3	14125547	14125876	-	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g019975.1.1	CUFF.31607.2	12864181	12864512	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.14263.2	mRNA:Solyc05g016190.3.1	14870649	14870879	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7156.3	mRNA:Solyc02g090135.1.1	52421148	52421300	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7207.2	CUFF.7208.1	52897670	52898264	-	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g090630.3.1	mRNA:Solyc02g090640.3.1	52821153	52821478	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g090500.3.1	CUFF.7175.3	52677155	52677996	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g090500.3.1	CUFF.7175.4	52679605	52679902	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g090260.2.1	CUFF.7161.2	52501405	52502491	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.27683.2	mRNA:Solyc10g051253.1.1	51726807	51727177	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.31715.1	CUFF.31715.2	20485928	20486981	-	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g015553.1.1	CUFF.14196.2	11419721	11419841	+	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g015680.2.1	mRNA:Solyc05g015658.1.1	11674924	11675101	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g091020.2.1	CUFF.7228.3	53091776	53092388	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7235.1	mRNA:Solyc02g091027.1.1	53102151	53102771	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g091620.2.1	CUFF.7274.3	53512157	53512848	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7269.3	mRNA:Solyc02g091525.1.1	53435664	53436110	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.18792.2	CUFF.18792.1	3714744	3715058	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.18792.2	CUFF.18792.1	3713891	3714380	-	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g092740.3.1	CUFF.26013.2	72150528	72150690	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g096060.3.1	CUFF.3098.2	87034772	87037636	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.18899.1	mRNA:Solyc07g015980.3.1	6057028	6057420	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3132.1	mRNA:Solyc01g096370.3.1	87325386	87327053	+	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g006260.2.1	CUFF.21048.2	951979	953108	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.21057.1	mRNA:Solyc08g006300.3.1	965318	965470	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.21022.1	mRNA:Solyc08g006025.1.1	786303	786547	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7453.1	mRNA:Solyc02g093460.3.1	54964407	54964940	+	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g006180.3.1	CUFF.21039.2	892912	893074	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19017.1	mRNA:Solyc07g017960.3.1	8639943	8640101	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19014.1	mRNA:Solyc07g017955.1.1	8632208	8632636	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19004.1	mRNA:Solyc07g017820.2.1	8135305	8135748	-	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g017820.2.1	CUFF.19004.3	8138427	8138731	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.18976.1	CUFF.18976.2	7726939	7727715	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.20960.1	mRNA:Solyc08g005450.2.1	332345	332933	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.20931.1	CUFF.20931.2	125219	125993	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5708.2	mRNA:Solyc02g069203.1.1	39733010	39733571	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3268.1	mRNA:Solyc01g098065.1.1	88537916	88538189	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3262.1	CUFF.3262.3	88518811	88519321	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3262.1	mRNA:Solyc01g098030.3.1	88518811	88519320	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g097670.3.1	CUFF.3233.2	88308997	88309561	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g018035.1.1	CUFF.19038.3	8929331	8929831	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3224.1	mRNA:Solyc01g097430.3.1	88161918	88162654	-	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g068670.2.1	CUFF.5645.4	39187830	39188425	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5642.1	mRNA:Solyc02g068645.1.1	39167440	39167759	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.451.1	CUFF.451.2	479821	480378	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g005720.3.1	mRNA:Solyc01g005715.1.1	489278	489454	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.454.1	mRNA:Solyc01g005730.3.1	491158	493414	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g005830.3.1	CUFF.463.2	568730	569396	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.18526.1	mRNA:Solyc07g005770.2.1	627497	627981	-	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g006030.3.1	CUFF.18550.2	866922	867244	-	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g067950.3.1	CUFF.5584.1	38600345	38600797	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5584.1	mRNA:Solyc02g067960.2.1	38602013	38602804	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5631.1	mRNA:Solyc02g068440.3.1	38958926	38959391	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5631.1	mRNA:Solyc02g068445.1.1	38958743	38959029	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.27869.1	mRNA:Solyc10g055545.1.1	56858480	56858755	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g067105.1.1	CUFF.5502.2	37907627	37907953	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g055730.2.1	CUFF.27887.2	57234865	57235261	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g055710.2.1	mRNA:Solyc10g055715.1.1	57185296	57187101	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.18642.1	mRNA:Solyc07g007260.3.1	1993339	1993626	+	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25962.2	mRNA:Solyc09g092030.3.1	71683081	71683641	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25943.2	mRNA:Solyc09g091855.1.1	71542291	71542892	-	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g007650.2.1	CUFF.18670.2	2305651	2305781	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.27942.1	CUFF.27942.3	58628170	58628523	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g074850.2.1	CUFF.27942.3	58628312	58628426	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.18685.1	mRNA:Solyc07g007725.1.1	2374232	2374448	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5469.1	mRNA:Solyc02g065670.2.1	37403314	37404289	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.538.2	mRNA:Solyc01g006925.1.1	1492436	1492705	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g008300.2.1	mRNA:Solyc07g008310.3.1	3078026	3078264	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.27983.1	mRNA:Solyc10g076270.2.1	59280381	59284179	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5402.1	mRNA:Solyc02g064590.2.1	36285139	36285430	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5413.1	mRNA:Solyc02g064795.1.1	36510663	36511876	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5418.1	mRNA:Solyc02g064808.1.1	36523994	36524222	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5417.2	mRNA:Solyc02g064806.1.1	36523512	36523795	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28125.1	mRNA:Solyc10g079350.2.1	61037127	61038273	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g099460.2.1	CUFF.3366.2	89596391	89596686	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28110.2	CUFF.28110.1	60859254	60859854	-	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g021625.1.1	mRNA:Solyc07g021630.3.1	20368264	20369029	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3344.1	CUFF.3344.3	89383526	89383992	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g099220.3.1	CUFF.3346.2	89404984	89405080	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5289.4	CUFF.5289.2	34237260	34238182	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5358.1	mRNA:Solyc02g062975.1.1	35514828	35515118	-	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g062910.2.1	CUFF.5351.2	35392940	35394504	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5331.1	mRNA:Solyc02g062640.3.1	34934294	34934662	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3411.1	mRNA:Solyc01g099745.1.1	89781934	89782178	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3515.1	mRNA:Solyc01g101150.2.1	90875636	90875793	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28228.1	mRNA:Solyc10g080460.2.1	61855381	61855768	-	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g080450.2.1	CUFF.28226.2	61851113	61851389	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g100630.2.1	CUFF.3476.2	90485433	90487730	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28201.2	CUFF.28201.3	61671224	61671465	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28208.2	mRNA:Solyc10g080280.2.1	61729642	61731424	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.5165.2	CUFF.5165.3	30973876	30974414	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.19259.2	CUFF.19259.4	23733535	23733891	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g058930.3.1	mRNA:Solyc03g058940.3.1	29076566	29077296	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3558.1	mRNA:Solyc01g102650.2.1	91278369	91278744	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.21079.1	mRNA:Solyc08g006605.1.1	1200692	1200840	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g103970.3.1	CUFF.3681.2	92346880	92347397	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.16561.1	mRNA:Solyc06g034234.1.1	24093626	24093877	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.16613.1	mRNA:Solyc06g035810.1.1	25146161	25146497	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3761.1	mRNA:Solyc01g104437.1.1	92775366	92778119	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.28267.2	CUFF.28267.1	62448460	62449657	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3738.2	CUFF.3738.1	92720079	92720382	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3737.1	mRNA:Solyc01g104431.1.1	92706295	92707152	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3734.1	mRNA:Solyc01g104413.1.1	92684517	92688680	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3731.1	mRNA:Solyc01g104410.3.1	92679086	92679801	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g104435.1.1	CUFF.3750.4	92754592	92754908	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3717.2	mRNA:Solyc01g104320.3.1	92626285	92627047	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3882.2	mRNA:Solyc01g105570.3.1	93600324	93600961	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3891.2	CUFF.3891.3	93715726	93717334	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3902.2	mRNA:Solyc01g105880.4.1	93792909	93793312	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g106680.3.1	CUFF.3954.2	94353832	94354055	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.21300.1	CUFF.21300.2	3218196	3218755	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3979.1	mRNA:Solyc01g106960.2.1	94549489	94550074	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3910.1	mRNA:Solyc01g106105.1.1	93982465	93982675	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3916.1	mRNA:Solyc01g106175.1.1	94023788	94024663	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.31556.1	mRNA:Solyc12g019480.2.1	10578919	10580242	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.8973.2	CUFF.8973.5	52417985	52418108	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.8944.1	mRNA:Solyc03g078210.3.1	51617008	51617277	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9007.1	mRNA:Solyc03g078843.1.1	53043640	53043949	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.14731.1	mRNA:Solyc05g025730.2.1	36100660	36101498	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.16789.2	CUFF.16789.6	31509075	31509486	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g080090.3.1	CUFF.9028.2	53426183	53426753	+	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g048810.3.1	CUFF.16798.2	31835327	31836347	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9064.1	mRNA:Solyc03g082540.3.1	53894904	53895727	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9034.1	mRNA:Solyc03g081200.2.1	53539189	53539504	+	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g043275.1.1	CUFF.16736.5	28974444	28974620	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.14509.2	CUFF.14509.3	26560637	26561017	+	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g036440.2.1	CUFF.16676.2	26081835	26082074	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.16664.7	mRNA:Solyc06g036236.1.1	25806605	25806802	+	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g023600.2.1	mRNA:Solyc05g023605.1.1	28229021	28230167	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.31285.1	mRNA:Solyc12g011213.1.1	4076034	4077695	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17255.3	mRNA:Solyc06g060010.3.1	38063221	38063594	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g047650.2.1	mRNA:Solyc10g047643.1.1	41478289	41479751	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.31218.1	mRNA:Solyc12g010237.1.1	3358922	3361237	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.27331.2	mRNA:Solyc10g047540.2.1	41020292	41020514	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17210.1	CUFF.17210.2	37340099	37340342	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17210.2	mRNA:Solyc06g054455.1.1	37340725	37340863	+	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g015650.2.1	CUFF.31409.2	5649895	5650022	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.27143.1	mRNA:Solyc10g044915.1.1	28863519	28864659	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.31440.2	mRNA:Solyc12g016210.2.1	6354696	6354952	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17092.1	mRNA:Solyc06g053370.2.1	36207169	36207502	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.27181.2	mRNA:Solyc10g045180.1.1	31827596	31827790	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3297.2	mRNA:Solyc01g098490.3.1	88869076	88869310	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3300.1	mRNA:Solyc01g098530.3.1	88902017	88902523	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3312.1	mRNA:Solyc01g098710.3.1	89010321	89011384	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.31397.2	mRNA:Solyc12g014440.2.1	5415427	5415694	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3321.1	mRNA:Solyc01g098830.3.1	89111640	89111886	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17030.1	mRNA:Solyc06g084760.2.1	35670178	35670353	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g077925.1.1	CUFF.8905.2	49981606	49981774	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17006.1	mRNA:Solyc06g051573.1.1	35179674	35181032	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g078000.3.1	CUFF.8906.2	50264235	50264581	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30017.1	CUFF.30017.3	32778241	32778815	-	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g082880.3.1	CUFF.23425.3	65664315	65664782	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.7739.3	CUFF.7739.1	1845149	1845653	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32557.2	CUFF.32557.1	59267167	59268158	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32565.1	mRNA:Solyc12g042990.2.1	59519775	59519992	-	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g009210.3.1	CUFF.26434.3	3191956	3193228	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26427.3	CUFF.26427.2	3104702	3104986	-	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g009050.3.1	CUFF.26420.3	3066605	3067626	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.23382.1	mRNA:Solyc08g082410.3.1	65344647	65344778	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20585.1	mRNA:Solyc07g061905.1.1	64927136	64928280	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g061780.3.1	CUFF.20576.2	64868926	64870032	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30085.1	mRNA:Solyc11g042883.1.1	34310559	34310741	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26374.1	mRNA:Solyc10g008515.1.1	2617907	2619604	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.18472.3	CUFF.18472.2	206479	206898	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g006050.3.1	CUFF.7645.2	743456	745628	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26324.1	mRNA:Solyc10g007780.2.1	2005457	2005678	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26324.1	mRNA:Solyc10g007780.2.1	2005770	2005913	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26325.1	mRNA:Solyc10g007850.3.1	2043390	2044023	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.23444.2	mRNA:Solyc08g083270.2.1	65896666	65897613	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.13427.1	mRNA:Solyc04g082860.2.1	66466426	66466643	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.13419.1	CUFF.13419.2	66410492	66411200	-	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g041955.1.1	CUFF.32471.2	56501603	56502145	-	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g030475.1.1	CUFF.29785.3	21985045	21986746	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.29785.2	CUFF.29785.3	21987211	21988662	+	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g040685.1.1	CUFF.32440.2	55784731	55785536	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2537.3	CUFF.2537.2	81689476	81690572	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g086930.3.1	mRNA:Solyc01g086925.1.1	81703094	81703409	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32492.1	mRNA:Solyc12g042117.1.1	58080045	58080393	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.23358.1	mRNA:Solyc08g082165.1.1	65151703	65152274	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.23326.2	mRNA:Solyc08g081760.2.1	64845798	64846509	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.23321.1	mRNA:Solyc08g081670.2.1	64763171	64764356	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.23319.1	mRNA:Solyc08g081640.3.1	64752952	64753117	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12410.1	mRNA:Solyc04g055230.2.1	53802217	53802852	+	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g088200.2.1	mRNA:Solyc12g088210.2.1	64626775	64627003	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g080450.3.1	CUFF.2384.2	79542722	79543031	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.11455.2	mRNA:Solyc04g019310.2.1	11576126	11576533	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g039950.3.1	CUFF.11478.2	12366242	12366680	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g039945.1.1	CUFF.11480.2	12375101	12375578	+	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g089080.2.1	CUFF.32966.2	65192605	65192858	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32962.1	mRNA:Solyc12g088950.2.1	65114822	65115414	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2212.1	mRNA:Solyc01g068155.1.1	77071995	77072886	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32707.1	mRNA:Solyc12g049480.2.1	62035211	62036334	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.7827.1	CUFF.7827.3	3015727	3016294	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.7851.1	mRNA:Solyc03g025923.1.1	3363632	3363802	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.7876.1	mRNA:Solyc03g026010.2.1	3446746	3447618	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g068540.3.1	mRNA:Solyc01g068563.1.1	77582628	77583084	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32847.1	mRNA:Solyc12g056625.1.1	63558714	63559828	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32784.2	mRNA:Solyc12g055930.2.1	62870905	62871423	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g007510.3.1	CUFF.7751.2	2086359	2086898	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.7753.2	mRNA:Solyc03g007545.1.1	2111479	2111654	+	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g056350.2.1	mRNA:Solyc12g056355.1.1	63255825	63256192	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.11599.1	mRNA:Solyc04g026110.3.1	18823961	18824731	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.11578.2	mRNA:Solyc04g026235.1.1	18190959	18191288	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.4638.1	mRNA:Solyc02g005490.3.1	9306116	9306520	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12122.1	mRNA:Solyc04g050245.1.1	46263721	46264483	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.11230.1	mRNA:Solyc04g014615.1.1	4906167	4906522	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g014650.3.1	CUFF.11234.2	4919571	4920486	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.11259.2	mRNA:Solyc04g014960.3.1	5179912	5180340	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.4480.1	mRNA:Solyc02g050180.3.1	4156341	4156741	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g012110.2.1	mRNA:Solyc04g012105.1.1	4419977	4420188	+	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g076380.2.1	CUFF.22940.2	60476168	60476304	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12199.1	mRNA:Solyc04g050760.3.1	48188076	48188466	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22920.2	mRNA:Solyc08g076025.1.1	60201968	60202599	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.4555.1	CUFF.4555.4	7350922	7351321	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.4554.1	mRNA:Solyc02g005110.3.1	6645434	6645744	+	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g076130.3.1	CUFF.22926.1	60284400	60286966	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22898.1	mRNA:Solyc08g075720.2.1	59966664	59966903	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.11358.1	mRNA:Solyc04g016177.1.1	6940440	6941039	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.4742.1	mRNA:Solyc02g014520.3.1	17392016	17392247	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g066170.3.1	CUFF.20869.3	67785889	67787310	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12259.1	mRNA:Solyc04g051247.1.1	50128948	50129219	-	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g016440.3.1	CUFF.11377.2	7258371	7259243	-	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g016290.3.1	CUFF.11367.2	7076550	7077140	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.11314.2	mRNA:Solyc04g015710.3.1	6008331	6009078	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20763.2	mRNA:Solyc07g064630.3.1	66822681	66822922	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.23176.2	mRNA:Solyc08g079313.1.1	63024326	63024972	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20746.1	mRNA:Solyc07g064370.1.1	66689058	66689495	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.23137.1	mRNA:Solyc08g078780.2.1	62623677	62624677	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20743.3	mRNA:Solyc07g064320.2.1	66649537	66649675	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20743.2	mRNA:Solyc07g064320.2.1	66649595	66649839	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25376.1	CUFF.25376.2	64150397	64151770	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20822.4	mRNA:Solyc07g065445.1.1	67323138	67323358	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20822.4	CUFF.20822.6	67323445	67324364	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.23222.3	CUFF.23222.2	63678395	63679423	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25316.2	mRNA:Solyc09g065120.3.1	63214935	63215493	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30297.1	mRNA:Solyc11g062195.1.1	49378099	49378927	+	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g065660.3.1	CUFF.25374.2	64110707	64111076	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30108.3	CUFF.30108.1	36454449	36454775	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30115.1	mRNA:Solyc11g042460.2.1	36728395	36728623	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30125.1	mRNA:Solyc11g042428.1.1	37692029	37692238	-	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g040300.2.1	mRNA:Solyc11g040305.1.1	38155576	38155821	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22981.2	mRNA:Solyc08g076890.3.1	60942726	60943525	+	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g076610.3.1	CUFF.22959.2	60676876	60677344	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22964.2	CUFF.22964.1	60734798	60736210	-	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g076710.3.1	mRNA:Solyc08g076715.1.1	60770598	60771429	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.11153.1	mRNA:Solyc04g011580.3.1	4005044	4005249	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.11157.1	mRNA:Solyc04g011610.2.1	4048636	4049471	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.30191.1	mRNA:Solyc11g039950.2.1	40784643	40787307	-	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g049445.1.1	CUFF.12025.2	41848307	41848696	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12043.1	mRNA:Solyc04g049660.2.1	42704754	42704866	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12086.1	mRNA:Solyc04g049930.2.1	44824222	44824931	+	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25598.1	mRNA:Solyc09g075400.3.1	67537456	67538028	-	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.13982.1	mRNA:Solyc05g013260.2.1	6339488	6341075	-	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g074960.1.1	CUFF.25572.2	67188162	67188909	-	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g011840.3.1	CUFF.13861.2	5075344	5075744	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.13867.1	mRNA:Solyc05g011970.3.1	5180527	5181209	+	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25639.1	mRNA:Solyc09g075930.2.1	67977565	67977863	-	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g014400.3.1	CUFF.14096.2	8249707	8250170	-	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g014400.3.1	CUFF.14096.2	8247574	8247815	-	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.14097.2	mRNA:Solyc05g014410.2.1	8250636	8251897	-	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.14067.1	mRNA:Solyc05g014155.1.1	7895907	7896424	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25827.1	mRNA:Solyc09g090490.2.1	70470118	70471003	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25819.1	mRNA:Solyc09g090390.2.1	70400378	70401198	+	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g090515.1.1	CUFF.25828.2	70497767	70498437	-	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g090553.1.1	mRNA:Solyc09g090560.1.1	70522641	70523108	-	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.13620.2	CUFF.13620.4	2221522	2221974	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20523.1	mRNA:Solyc07g055970.1.1	64008965	64009344	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20471.2	mRNA:Solyc07g055625.1.1	63722683	63723016	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20476.1	mRNA:Solyc07g055650.1.1	63748786	63749634	+	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g090750.3.1	mRNA:Solyc09g090760.3.1	70665219	70665438	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10670.1	mRNA:Solyc03g123590.3.1	71902162	71902728	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g055215.1.1	CUFF.20447.2	63457490	63459649	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20440.1	mRNA:Solyc07g055140.3.1	63403245	63403364	+	1^2-3^4-,0	complex events
SL3.0ch07	mRNA:Solyc07g055025.1.1	mRNA:Solyc07g055030.1.1	63306238	63306442	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10625.1	mRNA:Solyc03g122020.3.1	71497992	71498451	+	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25683.1	mRNA:Solyc09g082530.2.1	68673197	68673526	-	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.13739.1	mRNA:Solyc05g009070.3.1	3217007	3217406	+	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g009075.1.1	CUFF.13740.2	3222976	3223147	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.13764.2	mRNA:Solyc05g009545.1.1	3756366	3757970	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20346.2	mRNA:Solyc07g054080.2.1	62615847	62616019	+	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20351.1	mRNA:Solyc07g054130.2.1	62633006	62633725	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20359.1	mRNA:Solyc07g054230.3.1	62718811	62719147	-	1^2-3^4-,0	complex events
SL3.0ch07	CUFF.20326.1	mRNA:Solyc07g053730.3.1	62279382	62279766	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10697.2	mRNA:Solyc03g123890.3.1	72076227	72076584	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10697.2	CUFF.10697.3	72076227	72076584	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2981.1	mRNA:Solyc01g094590.3.1	85896713	85899848	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.3033.1	CUFF.3033.2	86298808	86300826	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g031440.3.1	CUFF.7930.2	4011819	4012052	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g031440.3.1	CUFF.7930.3	4012070	4012420	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g031440.3.1	CUFF.7930.4	4011431	4011766	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g033310.3.1	CUFF.8023.1	4910157	4910918	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.8013.1	mRNA:Solyc03g032240.3.1	4793682	4793963	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.8007.1	mRNA:Solyc03g032190.3.1	4719672	4720029	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32316.2	mRNA:Solyc12g038570.2.1	51521615	51523102	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2970.1	mRNA:Solyc01g094540.3.1	85847409	85847595	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.7954.1	mRNA:Solyc03g031780.3.1	4298404	4298866	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.7977.1	mRNA:Solyc03g031970.3.1	4491361	4491877	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g091610.1.1	CUFF.2894.3	85071448	85071754	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32254.1	mRNA:Solyc12g036935.1.1	49028129	49029221	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32231.1	mRNA:Solyc12g036727.1.1	47954053	47955050	-	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g036793.1.1	CUFF.32232.2	48340271	48343439	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g018907.1.1	CUFF.26731.2	10852948	10854345	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2775.1	mRNA:Solyc01g090140.2.1	83647110	83647790	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2790.1	mRNA:Solyc01g090270.3.1	83808155	83808562	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.32111.1	mRNA:Solyc12g035875.1.1	44519577	44519819	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g088160.3.1	CUFF.2687.2	82887198	82887519	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2688.2	CUFF.2688.3	82925641	82925985	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.8202.1	mRNA:Solyc03g044026.1.1	7875490	7876597	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g044747.1.1	CUFF.8289.4	10482872	10483286	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2601.2	mRNA:Solyc01g087336.1.1	82180175	82180352	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g087690.2.1	CUFF.2662.2	82491476	82492046	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2672.1	mRNA:Solyc01g087830.1.1	82588128	82588503	+	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26489.1	mRNA:Solyc10g011810.3.1	4029469	4029972	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26483.1	mRNA:Solyc10g011700.3.1	3962625	3963563	+	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g034030.3.1	CUFF.8075.2	5778686	5779000	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22401.1	mRNA:Solyc08g063090.2.1	52734605	52735341	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g064640.3.1	CUFF.12569.3	55822368	55822687	-	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g005140.2.1	CUFF.23468.2	130661	131777	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.23469.1	CUFF.23469.3	156736	157193	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.1654.1	mRNA:Solyc01g057175.1.1	59426167	59426480	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.1684.1	mRNA:Solyc01g057340.3.1	60499287	60499746	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g057430.3.1	CUFF.1703.3	60889382	60889773	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g057477.1.1	CUFF.1711.2	61051933	61052965	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10611.3	CUFF.10611.4	71331536	71331685	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10611.3	CUFF.10611.2	71332243	71332452	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10611.3	CUFF.10611.2	71332906	71333138	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g058040.2.1	CUFF.12497.2	55102579	55102947	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g058000.2.1	CUFF.12491.2	55086851	55087298	+	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.23537.1	mRNA:Solyc09g005980.3.1	671339	671722	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.11025.1	mRNA:Solyc04g009170.2.1	2672388	2672566	+	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g010350.2.1	CUFF.28947.2	3426854	3427270	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.28962.2	mRNA:Solyc11g010625.1.1	3691284	3691436	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.28962.2	mRNA:Solyc11g010625.1.1	3691769	3691915	+	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g057770.3.1	mRNA:Solyc01g057773.1.1	63678323	63680074	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.1777.1	mRNA:Solyc01g057760.3.1	63618063	63618751	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22578.1	mRNA:Solyc08g067060.2.1	56041151	56043005	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.29025.1	mRNA:Solyc11g011410.2.1	4481039	4481312	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g072550.2.1	CUFF.12778.2	59619780	59619921	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g008140.2.1	mRNA:Solyc04g008130.2.1	1811281	1813070	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.10938.2	mRNA:Solyc04g008410.2.1	2031761	2031902	-	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g067245.1.1	CUFF.22590.3	56335504	56335917	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g058270.3.1	CUFF.1828.2	65880914	65881337	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.10887.1	mRNA:Solyc04g007767.1.1	1455279	1455620	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.29037.3	mRNA:Solyc11g011535.1.1	4589879	4591032	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12648.1	CUFF.12648.2	58300865	58301231	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12647.1	mRNA:Solyc04g071280.2.1	58299450	58299581	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.1820.1	mRNA:Solyc01g058210.2.1	65557726	65558032	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.23697.1	mRNA:Solyc09g008790.3.1	2219582	2219824	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g120010.3.1	CUFF.10464.3	70000335	70000557	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12651.2	mRNA:Solyc04g071290.3.1	58307329	58307694	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22625.1	mRNA:Solyc08g067610.3.1	56686387	56686808	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22628.3	CUFF.22628.1	56772018	56772262	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22628.2	CUFF.22628.1	56771801	56772100	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10449.1	mRNA:Solyc03g119750.3.1	69782571	69782834	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.10830.1	mRNA:Solyc04g007100.3.1	815149	815390	-	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g071360.3.1	CUFF.12660.3	58429018	58429749	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.10803.1	mRNA:Solyc04g005690.3.1	454870	455533	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22733.1	mRNA:Solyc08g068770.2.1	57962627	57963511	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.1324.1	mRNA:Solyc01g020500.2.1	30956074	30957447	+	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g056320.3.1	mRNA:Solyc05g056325.1.1	66506674	66506999	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12786.1	CUFF.12786.6	59659093	59659343	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g073960.3.1	CUFF.12815.2	60076773	60077269	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g072830.3.1	CUFF.12808.2	59879969	59880061	-	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g072890.3.1	CUFF.12811.3	59931509	59932085	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12805.1	mRNA:Solyc04g072790.2.1	59850308	59850829	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22803.1	mRNA:Solyc08g074650.3.1	58905629	58906644	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22828.1	mRNA:Solyc08g074887.1.1	59157594	59160070	+	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g074950.2.1	CUFF.22833.2	59200686	59201108	-	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g077110.3.1	CUFF.13002.3	62150943	62151664	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.1431.1	mRNA:Solyc01g028805.1.1	42413836	42414273	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.15778.1	mRNA:Solyc05g055970.3.1	66230008	66231335	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.13044.2	CUFF.13044.1	62746124	62747270	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.13022.1	mRNA:Solyc04g077480.3.1	62486215	62486930	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.13022.1	mRNA:Solyc04g077485.1.1	62486003	62486175	-	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22855.1	mRNA:Solyc08g075140.1.1	59416484	59417133	+	1^2-3^4-,0	complex events
SL3.0ch08	CUFF.22857.1	CUFF.22857.2	59432379	59432817	-	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g075340.3.1	mRNA:Solyc08g075350.2.1	59597967	59598101	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.15691.2	mRNA:Solyc05g054915.1.1	65547261	65548033	-	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g076940.3.1	CUFF.12987.4	61966515	61966803	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12992.1	mRNA:Solyc04g076965.1.1	61996446	61996684	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12973.1	mRNA:Solyc04g076830.3.1	61787742	61787987	-	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g076700.3.1	CUFF.12946.2	61674028	61680004	+	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g076620.3.1	CUFF.12942.3	61596811	61601564	-	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g076510.3.1	CUFF.12929.2	61485682	61485745	+	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.12925.1	mRNA:Solyc04g076460.3.1	61419316	61420728	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.29486.1	mRNA:Solyc11g020595.1.1	11652280	11652616	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10056.1	mRNA:Solyc03g115550.3.1	66705682	66705971	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10061.3	mRNA:Solyc03g115590.3.1	66724910	66725118	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g115590.3.1	CUFF.10061.2	66728569	66728712	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10065.2	mRNA:Solyc03g115600.3.1	66738927	66739224	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10110.1	mRNA:Solyc03g116230.3.1	67208373	67208937	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.29559.1	mRNA:Solyc11g022400.1.1	13758066	13758762	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.9962.1	mRNA:Solyc03g114740.3.1	66132354	66133727	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10006.3	CUFF.10006.6	66457919	66458153	-	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g020910.2.1	CUFF.29510.2	12937492	12937875	+	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.15512.1	mRNA:Solyc05g052270.2.1	63383072	63383296	-	1^2-3^4-,0	complex events
SL3.0ch05	CUFF.15518.1	mRNA:Solyc05g052330.2.1	63442610	63442935	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.29578.1	mRNA:Solyc11g022605.1.1	14982097	14982226	+	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.29170.1	mRNA:Solyc11g012900.2.1	5685967	5687010	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.29119.2	CUFF.29119.3	5378043	5378271	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g119030.3.1	CUFF.10363.2	69226187	69226472	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g119350.2.1	CUFF.10404.3	69474669	69474963	+	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.33033.2	mRNA:Solyc12g095960.2.1	66042686	66043842	-	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.1917.1	CUFF.1917.3	69720989	69722586	-	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g096340.2.1	CUFF.33061.2	66282890	66283799	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10294.3	CUFF.10294.2	68723733	68724191	-	1^2-3^4-,0	complex events
SL3.0ch12	mRNA:Solyc12g098210.2.1	CUFF.33115.2	66799235	66799677	-	1^2-3^4-,0	complex events
SL3.0ch11	CUFF.29328.1	mRNA:Solyc11g018495.1.1	8618924	8619428	+	1^2-3^4-,0	complex events
SL3.0ch08	mRNA:Solyc08g062200.2.1	CUFF.22255.2	50762596	50763333	+	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g017285.1.1	CUFF.29309.2	8162218	8163127	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10168.2	CUFF.10168.3	67732220	67732702	-	1^2-3^4-,0	complex events
SL3.0ch03	mRNA:Solyc03g116930.3.1	CUFF.10158.2	67688416	67688875	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.33187.1	mRNA:Solyc12g099510.2.1	67613334	67613742	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.33182.1	mRNA:Solyc12g099430.2.1	67568305	67568672	+	1^2-3^4-,0	complex events
SL3.0ch11	mRNA:Solyc11g019920.2.1	mRNA:Solyc11g019935.1.1	9810867	9812047	+	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10127.1	mRNA:Solyc03g116460.3.1	67365233	67365474	-	1^2-3^4-,0	complex events
SL3.0ch03	CUFF.10127.2	mRNA:Solyc03g116460.3.1	67365497	67366257	-	1^2-3^4-,0	complex events
SL3.0ch12	CUFF.33211.1	CUFF.33211.2	67893653	67895166	+	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.24599.1	mRNA:Solyc09g031523.1.1	30814453	30814806	-	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g076253.1.1	mRNA:Solyc06g076240.1.1	47513579	47513813	-	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g076250.3.1	CUFF.18159.4	47512024	47512689	+	1^2-3^4-,0	complex events
SL3.0ch06	mRNA:Solyc06g076257.1.1	CUFF.18159.2	47510004	47510288	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.18065.1	mRNA:Solyc06g074900.2.1	46542324	46543227	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.18066.1	mRNA:Solyc06g074905.1.1	46544492	46545952	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.18117.1	mRNA:Solyc06g075555.1.1	47057919	47058307	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g006153.1.1	CUFF.26187.1	878494	879742	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.24873.1	mRNA:Solyc09g056270.2.1	48762591	48763309	+	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.24842.1	mRNA:Solyc09g056130.3.1	47370657	47372601	-	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g056130.3.1	mRNA:Solyc09g056135.1.1	47372673	47373136	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26190.1	CUFF.26190.8	900172	901665	-	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g006157.1.1	mRNA:Solyc10g006190.3.1	900172	900524	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26190.5	CUFF.26190.8	900208	901665	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26193.3	CUFF.26193.2	925309	925794	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g083785.1.1	CUFF.6586.2	47610745	47613581	+	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.24800.1	mRNA:Solyc09g055890.3.1	46294605	46295084	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17959.1	mRNA:Solyc06g073480.3.1	45430960	45431199	+	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g006910.2.1	CUFF.26252.2	1338198	1338413	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6443.2	mRNA:Solyc02g082170.2.1	46433104	46433222	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6443.1	mRNA:Solyc02g082170.2.1	46434341	46434434	-	1^2-3^4-,0	complex events
SL3.0ch10	CUFF.26209.1	mRNA:Solyc10g006540.3.1	1095554	1095716	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6511.1	CUFF.6511.2	46979931	46980263	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6511.2	CUFF.6511.3	46981322	46981954	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6490.3	CUFF.6490.1	46819961	46820918	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6490.3	CUFF.6490.1	46823432	46825508	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6490.2	mRNA:Solyc02g082613.1.1	46821019	46822195	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17871.1	mRNA:Solyc06g072400.2.1	44805494	44805763	-	1^2-3^4-,0	complex events
SL3.0ch10	mRNA:Solyc10g007300.2.1	CUFF.26281.2	1696629	1701023	+	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g057887.1.1	CUFF.24978.2	52325013	52326156	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.17914.3	mRNA:Solyc06g072900.3.1	45087470	45087786	+	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g059340.2.1	CUFF.25034.2	54559656	54561991	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6888.2	mRNA:Solyc02g086795.1.1	50046574	50046824	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6846.1	mRNA:Solyc02g086460.3.1	49779207	49779387	+	1^2-3^4-,0	complex events
SL3.0ch00	mRNA:Solyc00g117655.1.1	CUFF.279.2	15446463	15446689	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g086585.1.1	CUFF.6856.2	49874852	49875172	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6844.1	mRNA:Solyc02g086440.3.1	49744487	49746497	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g086400.2.1	CUFF.6831.3	49690928	49691125	-	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g086400.2.1	CUFF.6831.4	49693033	49693830	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25209.1	mRNA:Solyc09g063015.1.1	61170800	61171422	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25242.1	mRNA:Solyc09g064470.3.1	61987179	61987989	+	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25255.2	CUFF.25255.1	62156777	62157656	-	1^2-3^4-,0	complex events
SL3.0ch09	CUFF.25266.1	mRNA:Solyc09g064670.2.1	62247654	62247871	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6716.2	mRNA:Solyc02g085285.1.1	48878827	48880259	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6716.2	mRNA:Solyc02g085310.3.1	48880442	48880670	-	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g064890.3.1	CUFF.25290.2	62621719	62625077	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2147.1	mRNA:Solyc01g067350.3.1	75627318	75628057	-	1^2-3^4-,0	complex events
SL3.0ch01	mRNA:Solyc01g067160.3.1	CUFF.2126.3	75384351	75384740	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6624.2	CUFF.6624.4	47914668	47916223	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6638.1	CUFF.6638.2	48003041	48004410	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6638.1	CUFF.6638.6	48006177	48007218	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6633.3	mRNA:Solyc02g084285.1.1	47989892	47994222	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g084160.2.1	CUFF.6621.3	47900764	47901511	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6614.1	mRNA:Solyc02g084130.3.1	47873685	47873986	-	1^2-3^4-,0	complex events
SL3.0ch00	CUFF.396.1	mRNA:Solyc00g311230.2.1	20542510	20542795	+	1^2-3^4-,0	complex events
SL3.0ch01	CUFF.2059.1	CUFF.2059.2	74311113	74311505	-	1^2-3^4-,0	complex events
SL3.0ch04	mRNA:Solyc04g079770.3.1	mRNA:Solyc04g079775.1.1	64193986	64194726	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7065.2	mRNA:Solyc02g089010.2.1	51549359	51551673	+	1^2-3^4-,0	complex events
SL3.0ch00	CUFF.158.1	mRNA:Solyc00g022103.1.1	11059590	11060039	-	1^2-3^4-,0	complex events
SL3.0ch00	CUFF.155.2	CUFF.155.1	11017530	11018305	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7045.2	mRNA:Solyc02g088940.3.1	51496735	51497079	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7045.2	CUFF.7045.3	51501981	51502326	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g088940.3.1	CUFF.7045.3	51501588	51501714	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g088780.3.1	CUFF.7039.4	51382208	51382728	-	1^2-3^4-,0	complex events
SL3.0ch05	mRNA:Solyc05g005290.3.1	CUFF.13449.2	232312	232775	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7018.4	mRNA:Solyc02g088427.1.1	51178546	51179168	+	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7014.3	mRNA:Solyc02g088400.3.1	51127922	51128221	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7014.3	mRNA:Solyc02g088395.1.1	51128798	51131049	-	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g088050.1.1	mRNA:Solyc02g088060.2.1	50900242	50900463	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6988.3	mRNA:Solyc02g088113.1.1	50937505	50937673	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.6993.1	mRNA:Solyc02g088140.2.1	50956569	50956815	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g088200.3.1	CUFF.6995.3	51005690	51006225	-	1^2-3^4-,0	complex events
SL3.0ch02	CUFF.7006.1	mRNA:Solyc02g088307.1.1	51087085	51088000	-	1^2-3^4-,0	complex events
SL3.0ch04	CUFF.13220.1	mRNA:Solyc04g080110.3.1	64464747	64465029	+	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g087540.2.1	CUFF.6945.2	50583903	50584421	-	1^2-3^4-,0	complex events
SL3.0ch00	CUFF.248.2	mRNA:Solyc06g050455.1.1	14041936	14042206	-	1^2-3^4-,0	complex events
SL3.0ch02	mRNA:Solyc02g087315.1.1	CUFF.6929.4	50399552	50399940	-	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.18372.2	mRNA:Solyc06g083720.2.1	49116345	49117195	+	1^2-3^4-,0	complex events
SL3.0ch06	CUFF.18361.1	mRNA:Solyc06g083640.3.1	49029475	49029873	-	1^2-3^4-,0	complex events
SL3.0ch09	mRNA:Solyc09g015630.2.1	mRNA:Solyc09g015617.1.1	10505432	10505533	-	1^,2^	alternative donor site
SL3.0ch05	mRNA:Solyc05g043200.1.1	mRNA:Solyc05g042184.1.1	56308694	56308699	-	1^,2^	alternative donor site
SL3.0ch09	CUFF.23873.1	mRNA:Solyc09g010970.3.1	4325452	4325453	-	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g009650.1.1	mRNA:Solyc01g009645.1.1	3821665	3821669	+	1^,2^	alternative donor site
SL3.0ch08	mRNA:Solyc08g029150.2.1	CUFF.21990.2	38125193	38125194	-	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g017300.1.1	mRNA:Solyc01g017330.2.1	23853729	23853768	+	1^,2^	alternative donor site
SL3.0ch08	CUFF.21821.2	mRNA:Solyc08g023510.2.1	27546287	27546288	-	1^,2^	alternative donor site
SL3.0ch07	mRNA:Solyc07g042135.1.1	mRNA:Solyc07g042150.3.1	55248087	55248180	-	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g083710.2.1	mRNA:Solyc10g083720.2.1	63597822	63597843	+	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g083860.2.1	mRNA:Solyc10g083870.2.1	63724513	63724517	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g080940.3.1	mRNA:Solyc02g080950.2.1	45585889	45585895	+	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g080610.3.1	mRNA:Solyc02g080615.1.1	45347589	45348232	-	1^,2^	alternative donor site
SL3.0ch10	CUFF.28547.2	mRNA:Solyc10g086150.2.1	65202487	65202489	-	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g086330.2.1	mRNA:Solyc10g086335.1.1	65317275	65317451	+	1^,2^	alternative donor site
SL3.0ch09	CUFF.24326.2	mRNA:Solyc09g018845.1.1	17581649	17581744	+	1^,2^	alternative donor site
SL3.0ch07	mRNA:Solyc07g032480.3.1	CUFF.19522.2	39499833	39499834	-	1^,2^	alternative donor site
SL3.0ch07	CUFF.20317.1	mRNA:Solyc07g053525.1.1	62075298	62075300	-	1^,2^	alternative donor site
SL3.0ch07	mRNA:Solyc07g052707.1.1	mRNA:Solyc07g052730.3.1	61315630	61315646	+	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g077560.3.1	mRNA:Solyc02g077565.1.1	43033948	43033958	+	1^,2^	alternative donor site
SL3.0ch03	CUFF.9459.1	mRNA:Solyc03g097200.3.1	60957103	60957105	-	1^,2^	alternative donor site
SL3.0ch03	CUFF.9485.2	mRNA:Solyc03g097460.3.1	61226182	61226183	-	1^,2^	alternative donor site
SL3.0ch03	CUFF.9494.2	mRNA:Solyc03g097600.3.1	61371624	61371687	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g097585.1.1	mRNA:Solyc03g097610.3.1	61380350	61380362	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g097585.1.1	mRNA:Solyc03g097620.1.1	61387240	61387279	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g097560.3.1	mRNA:Solyc03g097580.3.1	61328702	61328704	-	1^,2^	alternative donor site
SL3.0ch06	CUFF.16437.3	CUFF.16437.2	18185212	18185213	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g079310.2.1	mRNA:Solyc02g079330.3.1	44487679	44487934	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g079310.2.1	mRNA:Solyc02g079330.3.1	44486042	44486078	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g095313.1.1	mRNA:Solyc03g095330.3.1	57805609	57805639	+	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g095750.2.1	mRNA:Solyc03g095753.1.1	58353941	58353945	+	1^,2^	alternative donor site
SL3.0ch07	CUFF.20102.2	mRNA:Solyc07g049180.3.1	59566080	59566081	-	1^,2^	alternative donor site
SL3.0ch07	CUFF.20078.1	mRNA:Solyc07g047900.3.1	59236874	59236875	-	1^,2^	alternative donor site
SL3.0ch07	mRNA:Solyc07g042850.2.1	CUFF.19906.3	56517080	56517134	-	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g008065.1.1	mRNA:Solyc06g008080.2.1	1955584	1955593	-	1^,2^	alternative donor site
SL3.0ch06	CUFF.17501.1	mRNA:Solyc06g065310.3.1	40847108	40847109	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g071365.1.1	mRNA:Solyc02g071400.3.1	41440386	41440488	-	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g009380.3.1	CUFF.16144.2	3295687	3295688	-	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g063130.3.1	mRNA:Solyc06g063140.3.1	39992406	39992433	+	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g063260.3.1	CUFF.17448.4	40077788	40077789	-	1^,2^	alternative donor site
SL3.0ch12	CUFF.30934.1	mRNA:Solyc12g005950.2.1	579830	579831	-	1^,2^	alternative donor site
SL3.0ch06	CUFF.17604.2	mRNA:Solyc06g066620.3.1	41985105	41985106	-	1^,2^	alternative donor site
SL3.0ch05	CUFF.15375.2	mRNA:Solyc05g050735.1.1	61722050	61722170	+	1^,2^	alternative donor site
SL3.0ch05	CUFF.15390.2	mRNA:Solyc05g050810.3.1	61845828	61847086	+	1^,2^	alternative donor site
SL3.0ch05	CUFF.15421.1	mRNA:Solyc05g051250.3.1	62383653	62383654	-	1^,2^	alternative donor site
SL3.0ch11	mRNA:Solyc11g072290.2.1	CUFF.30787.2	55782161	55782162	-	1^,2^	alternative donor site
SL3.0ch06	CUFF.15936.2	mRNA:Solyc06g005860.2.1	877577	877578	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g113970.3.1	mRNA:Solyc03g113980.3.1	65523307	65523373	+	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g113970.3.1	mRNA:Solyc03g113980.3.1	65523760	65523823	+	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g109540.3.1	mRNA:Solyc01g109530.3.1	96369325	96369394	+	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g072170.2.1	mRNA:Solyc06g072165.1.1	44626848	44626908	+	1^,2^	alternative donor site
SL3.0ch03	CUFF.9639.1	mRNA:Solyc03g110983.1.1	63168130	63168156	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g110980.3.1	mRNA:Solyc03g110983.1.1	63168421	63168513	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g111055.1.1	mRNA:Solyc03g111070.3.1	63229228	63229299	+	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g050780.1.1	mRNA:Solyc10g050772.1.1	50533604	50533614	-	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g051010.2.1	mRNA:Solyc10g051030.2.1	51294341	51294587	-	1^,2^	alternative donor site
SL3.0ch12	mRNA:Solyc12g035450.2.1	mRNA:Solyc12g035460.2.1	40480728	40480766	+	1^,2^	alternative donor site
SL3.0ch12	mRNA:Solyc12g035450.2.1	mRNA:Solyc12g035460.2.1	40480999	40481040	+	1^,2^	alternative donor site
SL3.0ch05	CUFF.14424.2	mRNA:Solyc05g018600.3.1	22413659	22413660	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g089290.3.1	CUFF.7092.2	51796155	51796157	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g089930.3.1	CUFF.7144.2	52242553	52242554	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g089930.3.1	CUFF.7144.2	52242030	52242031	-	1^,2^	alternative donor site
SL3.0ch05	CUFF.14283.1	mRNA:Solyc05g016257.1.1	15429629	15429797	+	1^,2^	alternative donor site
SL3.0ch02	CUFF.7175.2	CUFF.7175.3	52678399	52679605	+	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g051095.1.1	CUFF.27667.2	51435588	51435589	-	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g051095.1.1	CUFF.27667.2	51434827	51434829	-	1^,2^	alternative donor site
SL3.0ch05	mRNA:Solyc05g015656.1.1	mRNA:Solyc05g015660.1.1	11665415	11665457	+	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g091530.3.1	CUFF.7269.2	53439245	53439249	+	1^,2^	alternative donor site
SL3.0ch09	mRNA:Solyc09g098370.3.1	mRNA:Solyc09g098360.3.1	72698656	72698701	+	1^,2^	alternative donor site
SL3.0ch09	CUFF.26023.1	mRNA:Solyc09g097920.2.1	72406062	72406063	-	1^,2^	alternative donor site
SL3.0ch09	mRNA:Solyc09g098030.3.1	mRNA:Solyc09g098770.2.1	72439614	72439623	+	1^,2^	alternative donor site
SL3.0ch02	CUFF.7405.1	mRNA:Solyc02g093030.3.1	54616851	54616898	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.3115.2	CUFF.3115.3	87176140	87176141	-	1^,2^	alternative donor site
SL3.0ch09	mRNA:Solyc09g092170.2.1	mRNA:Solyc09g092175.1.1	71798123	71798158	-	1^,2^	alternative donor site
SL3.0ch02	CUFF.7577.1	mRNA:Solyc02g094630.3.1	55854351	55854352	-	1^,2^	alternative donor site
SL3.0ch02	CUFF.7510.2	mRNA:Solyc02g094090.3.1	55361651	55361652	-	1^,2^	alternative donor site
SL3.0ch10	CUFF.27755.2	mRNA:Solyc10g054100.2.1	54552739	54552741	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.3227.2	CUFF.3227.1	88204080	88204082	-	1^,2^	alternative donor site
SL3.0ch07	CUFF.18539.2	mRNA:Solyc07g005880.3.1	717796	717797	-	1^,2^	alternative donor site
SL3.0ch07	mRNA:Solyc07g005720.3.1	mRNA:Solyc07g005730.3.1	593492	593503	+	1^,2^	alternative donor site
SL3.0ch07	CUFF.18553.1	mRNA:Solyc07g006045.1.1	897276	897587	+	1^,2^	alternative donor site
SL3.0ch02	CUFF.5630.2	mRNA:Solyc02g068430.3.1	38951391	38951392	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.432.1	CUFF.432.2	317025	318127	-	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g006650.2.1	mRNA:Solyc01g006665.1.1	1253120	1253393	+	1^,2^	alternative donor site
SL3.0ch02	CUFF.5488.1	mRNA:Solyc02g067000.2.1	37816527	37816582	-	1^,2^	alternative donor site
SL3.0ch02	CUFF.5488.1	mRNA:Solyc02g067000.2.1	37816379	37816416	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.582.2	mRNA:Solyc01g007860.3.1	1957283	1957284	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.582.2	mRNA:Solyc01g007860.3.1	1954956	1954958	-	1^,2^	alternative donor site
SL3.0ch09	CUFF.25914.2	mRNA:Solyc09g091565.1.1	71299311	71299320	+	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g074910.2.1	CUFF.27946.2	58693062	58693063	-	1^,2^	alternative donor site
SL3.0ch07	CUFF.18725.4	mRNA:Solyc07g008095.1.1	2802850	2802851	-	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g076220.2.1	mRNA:Solyc10g076190.2.1	59141321	59141330	-	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g076500.2.1	mRNA:Solyc10g076490.1.1	59576483	59576498	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g064595.1.1	CUFF.5402.4	36286001	36286082	+	1^,2^	alternative donor site
SL3.0ch07	mRNA:Solyc07g021640.2.1	mRNA:Solyc07g021650.2.1	20530100	20530116	+	1^,2^	alternative donor site
SL3.0ch10	CUFF.28091.1	mRNA:Solyc10g078950.2.1	60720107	60720109	-	1^,2^	alternative donor site
SL3.0ch10	CUFF.28091.1	mRNA:Solyc10g078950.2.1	60717307	60717308	-	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g078510.2.1	mRNA:Solyc10g078520.2.1	60444683	60444713	+	1^,2^	alternative donor site
SL3.0ch01	CUFF.3419.2	mRNA:Solyc01g099930.3.1	89921246	89921247	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g036290.3.1	CUFF.5165.3	30970456	30970457	-	1^,2^	alternative donor site
SL3.0ch10	CUFF.28190.2	mRNA:Solyc10g080090.2.1	61608618	61608619	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g059127.1.1	mRNA:Solyc03g059140.3.1	30054495	30054775	+	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g059150.3.1	mRNA:Solyc03g059160.2.1	30059601	30059619	+	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g102460.3.1	mRNA:Solyc01g102450.3.1	91133357	91133361	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.3670.1	mRNA:Solyc01g103800.3.1	92201191	92201192	-	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g104930.2.1	mRNA:Solyc01g104935.1.1	93155780	93155788	-	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g104930.2.1	mRNA:Solyc01g104935.1.1	93155586	93155607	-	1^,2^	alternative donor site
SL3.0ch08	CUFF.21216.1	mRNA:Solyc08g008010.3.1	2503899	2503927	-	1^,2^	alternative donor site
SL3.0ch08	CUFF.21234.2	mRNA:Solyc08g008130.3.1	2598961	2598962	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.3860.1	mRNA:Solyc01g105370.3.1	93463993	93464061	-	1^,2^	alternative donor site
SL3.0ch08	CUFF.21343.1	mRNA:Solyc08g014020.3.1	3614885	3614886	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g082395.1.1	CUFF.9056.3	53775208	53775334	+	1^,2^	alternative donor site
SL3.0ch03	CUFF.9107.2	mRNA:Solyc03g082850.3.1	54128834	54128835	-	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g043170.3.1	mRNA:Solyc06g043175.1.1	29732357	29732372	+	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g036620.1.1	mRNA:Solyc06g036605.1.1	27054693	27054711	+	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g083140.3.1	mRNA:Solyc03g083143.1.1	54397344	54397388	+	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g083140.3.1	mRNA:Solyc03g083143.1.1	54397522	54397578	+	1^,2^	alternative donor site
SL3.0ch05	mRNA:Solyc05g021110.2.1	mRNA:Solyc05g021105.1.1	26375761	26375767	-	1^,2^	alternative donor site
SL3.0ch05	mRNA:Solyc05g018655.1.1	mRNA:Solyc05g018660.1.1	22786798	22786873	+	1^,2^	alternative donor site
SL3.0ch05	mRNA:Solyc05g021370.2.1	mRNA:Solyc05g021373.1.1	26941363	26941629	+	1^,2^	alternative donor site
SL3.0ch12	mRNA:Solyc12g011180.2.1	CUFF.31282.2	4024255	4024256	-	1^,2^	alternative donor site
SL3.0ch10	mRNA:Solyc10g045107.1.1	mRNA:Solyc10g045110.1.1	31317239	31317262	-	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g098760.3.1	mRNA:Solyc01g098750.2.1	89066085	89066095	+	1^,2^	alternative donor site
SL3.0ch12	mRNA:Solyc12g014440.2.1	CUFF.31397.3	5418314	5418315	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g007070.3.1	mRNA:Solyc03g007085.1.1	1638684	1638800	+	1^,2^	alternative donor site
SL3.0ch12	CUFF.32582.2	mRNA:Solyc12g043110.2.1	59701755	59701756	-	1^,2^	alternative donor site
SL3.0ch12	mRNA:Solyc12g042690.2.1	mRNA:Solyc12g042655.1.1	58963191	58963200	-	1^,2^	alternative donor site
SL3.0ch03	CUFF.7668.1	mRNA:Solyc03g006330.3.1	929516	929517	-	1^,2^	alternative donor site
SL3.0ch11	CUFF.30038.1	mRNA:Solyc11g044330.2.1	33177198	33177200	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.2449.2	mRNA:Solyc01g081180.1.1	80330135	80330158	-	1^,2^	alternative donor site
SL3.0ch04	CUFF.13419.2	mRNA:Solyc04g082770.3.1	66413667	66413668	-	1^,2^	alternative donor site
SL3.0ch03	CUFF.7588.1	mRNA:Solyc03g005080.3.1	60617	60618	-	1^,2^	alternative donor site
SL3.0ch08	CUFF.23269.1	mRNA:Solyc08g080910.3.1	64195576	64195577	-	1^,2^	alternative donor site
SL3.0ch03	CUFF.7615.2	mRNA:Solyc03g005580.2.1	422169	422170	-	1^,2^	alternative donor site
SL3.0ch12	CUFF.32440.2	mRNA:Solyc12g040695.1.1	55790319	55790846	-	1^,2^	alternative donor site
SL3.0ch11	CUFF.29818.2	CUFF.29818.1	25155291	25156336	-	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g081755.1.1	mRNA:Solyc04g081790.3.1	65785639	65785649	+	1^,2^	alternative donor site
SL3.0ch11	mRNA:Solyc11g045645.1.1	mRNA:Solyc11g045610.2.1	29588658	29588680	+	1^,2^	alternative donor site
SL3.0ch08	mRNA:Solyc08g081457.1.1	CUFF.23309.2	64634597	64634598	-	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g054470.3.1	mRNA:Solyc04g054475.1.1	52508954	52508975	+	1^,2^	alternative donor site
SL3.0ch01	CUFF.2388.1	mRNA:Solyc01g080570.3.1	79662911	79662912	-	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g039990.3.1	mRNA:Solyc04g039980.3.1	12318643	12318664	+	1^,2^	alternative donor site
SL3.0ch12	CUFF.32953.1	mRNA:Solyc12g088810.2.1	65022911	65022912	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g025760.3.1	mRNA:Solyc03g025780.3.1	3196886	3197018	-	1^,2^	alternative donor site
SL3.0ch12	mRNA:Solyc12g049570.2.1	CUFF.32715.2	62157195	62157197	-	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g079250.3.1	CUFF.2281.3	78202138	78202139	-	1^,2^	alternative donor site
SL3.0ch12	mRNA:Solyc12g056090.2.1	CUFF.32788.2	63017034	63017035	-	1^,2^	alternative donor site
SL3.0ch04	CUFF.11577.2	mRNA:Solyc04g026227.1.1	18213623	18213636	-	1^,2^	alternative donor site
SL3.0ch08	mRNA:Solyc08g076420.3.1	mRNA:Solyc08g076425.1.1	60556332	60556413	-	1^,2^	alternative donor site
SL3.0ch04	CUFF.11191.1	mRNA:Solyc04g012170.3.1	4456980	4456981	-	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g014400.3.1	mRNA:Solyc04g014430.2.1	4667099	4667174	-	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g014400.3.1	mRNA:Solyc04g014440.3.1	4674140	4674179	-	1^,2^	alternative donor site
SL3.0ch04	CUFF.12286.2	mRNA:Solyc04g051580.3.1	50817482	50817484	-	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g016550.3.1	CUFF.11387.2	7385929	7385939	-	1^,2^	alternative donor site
SL3.0ch05	CUFF.13598.2	mRNA:Solyc05g007200.3.1	1811900	1811901	-	1^,2^	alternative donor site
SL3.0ch04	CUFF.12325.1	mRNA:Solyc04g053080.3.1	51375929	51375930	-	1^,2^	alternative donor site
SL3.0ch08	mRNA:Solyc08g079000.3.1	mRNA:Solyc08g079005.1.1	62782781	62782835	-	1^,2^	alternative donor site
SL3.0ch07	CUFF.20822.1	CUFF.20822.4	67323721	67324364	-	1^,2^	alternative donor site
SL3.0ch09	CUFF.25328.1	mRNA:Solyc09g065155.1.1	63310579	63310580	-	1^,2^	alternative donor site
SL3.0ch08	CUFF.22957.1	mRNA:Solyc08g076590.3.1	60668240	60668241	-	1^,2^	alternative donor site
SL3.0ch07	mRNA:Solyc07g063240.3.1	CUFF.20692.2	65888973	65888975	-	1^,2^	alternative donor site
SL3.0ch05	mRNA:Solyc05g012710.3.1	mRNA:Solyc05g012720.3.1	5902710	5902855	+	1^,2^	alternative donor site
SL3.0ch05	mRNA:Solyc05g012710.3.1	mRNA:Solyc05g012720.3.1	5904227	5904231	+	1^,2^	alternative donor site
SL3.0ch09	CUFF.25501.2	mRNA:Solyc09g074100.3.1	66206009	66206010	-	1^,2^	alternative donor site
SL3.0ch09	mRNA:Solyc09g091400.3.1	CUFF.25907.2	71159819	71159820	-	1^,2^	alternative donor site
SL3.0ch09	mRNA:Solyc09g082470.3.1	CUFF.25677.2	68609266	68609267	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g043864.1.1	mRNA:Solyc02g043830.2.1	1307608	1307620	+	1^,2^	alternative donor site
SL3.0ch07	mRNA:Solyc07g054250.2.1	mRNA:Solyc07g054237.1.1	62724436	62724514	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g123890.3.1	CUFF.10697.3	72076311	72076312	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.2983.2	mRNA:Solyc01g094625.1.1	85924743	85924744	-	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g091435.1.1	mRNA:Solyc01g091440.3.1	84934272	84934311	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.2869.1	mRNA:Solyc01g091280.3.1	84810161	84810162	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.2818.2	mRNA:Solyc01g090645.1.1	84173026	84173180	-	1^,2^	alternative donor site
SL3.0ch10	CUFF.26633.1	mRNA:Solyc10g018300.2.1	7332089	7332090	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.2720.1	mRNA:Solyc01g088640.3.1	83278702	83278703	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g044100.3.1	mRNA:Solyc03g044097.1.1	8112423	8112456	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g034060.3.1	CUFF.8081.2	5798589	5798590	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g034160.3.1	mRNA:Solyc03g034165.1.1	5888584	5888637	-	1^,2^	alternative donor site
SL3.0ch10	CUFF.26529.2	mRNA:Solyc10g012160.3.1	4497842	4497843	-	1^,2^	alternative donor site
SL3.0ch04	CUFF.12565.2	mRNA:Solyc04g064560.3.1	55751256	55751257	-	1^,2^	alternative donor site
SL3.0ch08	CUFF.22434.1	mRNA:Solyc08g065430.3.1	53503086	53503087	-	1^,2^	alternative donor site
SL3.0ch08	mRNA:Solyc08g065510.1.1	mRNA:Solyc08g065530.2.1	53708550	53708556	-	1^,2^	alternative donor site
SL3.0ch08	CUFF.22441.2	mRNA:Solyc08g065600.1.1	53809000	53809011	+	1^,2^	alternative donor site
SL3.0ch01	CUFF.1654.1	CUFF.1654.4	59424342	59424353	+	1^,2^	alternative donor site
SL3.0ch08	CUFF.22510.1	mRNA:Solyc08g066360.3.1	55012382	55012383	-	1^,2^	alternative donor site
SL3.0ch11	CUFF.28930.1	mRNA:Solyc11g010230.2.1	3291047	3291048	-	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g058065.1.1	CUFF.12501.2	55124125	55124141	+	1^,2^	alternative donor site
SL3.0ch11	CUFF.28956.1	mRNA:Solyc11g010560.2.1	3626788	3626789	-	1^,2^	alternative donor site
SL3.0ch11	CUFF.28956.1	mRNA:Solyc11g010560.2.1	3614794	3614795	-	1^,2^	alternative donor site
SL3.0ch03	CUFF.10568.1	mRNA:Solyc03g121370.3.1	70965085	70965087	-	1^,2^	alternative donor site
SL3.0ch01	CUFF.1781.1	mRNA:Solyc01g057780.3.1	63861968	63861970	-	1^,2^	alternative donor site
SL3.0ch03	CUFF.10537.1	mRNA:Solyc03g120940.3.1	70665198	70665199	-	1^,2^	alternative donor site
SL3.0ch09	mRNA:Solyc09g007770.2.1	mRNA:Solyc09g007765.1.1	1302067	1302071	+	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g120000.3.1	mRNA:Solyc03g120010.3.1	69997753	69997763	-	1^,2^	alternative donor site
SL3.0ch04	CUFF.10843.1	mRNA:Solyc04g007260.3.1	977392	977393	-	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g071620.3.1	mRNA:Solyc04g071615.1.1	58672130	58672154	+	1^,2^	alternative donor site
SL3.0ch08	CUFF.22727.1	mRNA:Solyc08g068680.3.1	57877270	57877271	-	1^,2^	alternative donor site
SL3.0ch05	CUFF.15768.1	mRNA:Solyc05g055800.3.1	66150400	66150401	-	1^,2^	alternative donor site
SL3.0ch04	CUFF.13022.1	mRNA:Solyc04g077480.3.1	62484652	62484653	-	1^,2^	alternative donor site
SL3.0ch01	mRNA:Solyc01g034070.2.1	CUFF.1380.2	35752290	35752437	+	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g077330.3.1	mRNA:Solyc04g077340.3.1	62367695	62367755	+	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g077615.1.1	mRNA:Solyc04g077670.3.1	62695855	62695861	+	1^,2^	alternative donor site
SL3.0ch08	mRNA:Solyc08g075380.3.1	CUFF.22870.2	59635807	59635808	-	1^,2^	alternative donor site
SL3.0ch05	CUFF.15730.3	mRNA:Solyc05g055420.3.1	65932980	65932981	-	1^,2^	alternative donor site
SL3.0ch05	CUFF.15691.1	mRNA:Solyc05g054910.3.1	65560565	65560567	-	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g076925.1.1	mRNA:Solyc04g076940.3.1	61960140	61960189	+	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g076530.3.1	mRNA:Solyc04g076527.1.1	61510721	61510725	+	1^,2^	alternative donor site
SL3.0ch11	mRNA:Solyc11g020356.1.1	mRNA:Solyc11g020430.2.1	11092767	11092818	+	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g115530.3.1	mRNA:Solyc03g115520.3.1	66690319	66690340	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g116060.3.1	CUFF.10102.2	67056212	67056214	-	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g116060.3.1	CUFF.10102.2	67056015	67056016	-	1^,2^	alternative donor site
SL3.0ch05	CUFF.15602.1	mRNA:Solyc05g053610.2.1	64528723	64528725	-	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g078200.3.1	mRNA:Solyc04g078195.1.1	63090990	63090996	+	1^,2^	alternative donor site
SL3.0ch11	mRNA:Solyc11g050800.1.1	mRNA:Solyc11g050795.1.1	16262161	16262209	+	1^,2^	alternative donor site
SL3.0ch11	mRNA:Solyc11g050800.1.1	mRNA:Solyc11g050795.1.1	16262421	16262433	+	1^,2^	alternative donor site
SL3.0ch05	mRNA:Solyc05g052430.2.1	mRNA:Solyc05g052440.2.1	63511305	63511335	-	1^,2^	alternative donor site
SL3.0ch08	mRNA:Solyc08g061730.2.1	mRNA:Solyc08g061698.1.1	49513178	49513253	+	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g118175.1.1	mRNA:Solyc03g118180.3.1	68607497	68607609	+	1^,2^	alternative donor site
SL3.0ch12	mRNA:Solyc12g097030.2.1	mRNA:Solyc12g097035.1.1	66680921	66680958	+	1^,2^	alternative donor site
SL3.0ch03	mRNA:Solyc03g117850.3.1	CUFF.10245.2	68358843	68358844	-	1^,2^	alternative donor site
SL3.0ch12	CUFF.33153.2	mRNA:Solyc12g098860.2.1	67219368	67219369	-	1^,2^	alternative donor site
SL3.0ch11	mRNA:Solyc11g020007.1.1	mRNA:Solyc11g020020.1.1	10026733	10027027	-	1^,2^	alternative donor site
SL3.0ch11	mRNA:Solyc11g018810.2.1	mRNA:Solyc11g018820.2.1	9657928	9657952	-	1^,2^	alternative donor site
SL3.0ch06	CUFF.18327.1	mRNA:Solyc06g083390.3.1	48847493	48847494	-	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g076280.2.1	mRNA:Solyc06g076290.1.1	47544889	47544927	+	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g074860.2.1	mRNA:Solyc06g074855.1.1	46532898	46532979	+	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g075060.1.1	mRNA:Solyc06g075070.3.1	46708612	46708666	+	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g075160.3.1	CUFF.18088.2	46782735	46782736	-	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g074300.3.1	mRNA:Solyc06g074310.3.1	46065196	46065211	-	1^,2^	alternative donor site
SL3.0ch02	CUFF.6583.1	mRNA:Solyc02g083760.3.1	47598183	47598184	-	1^,2^	alternative donor site
SL3.0ch02	CUFF.6576.2	mRNA:Solyc02g083720.3.1	47576334	47576336	-	1^,2^	alternative donor site
SL3.0ch06	CUFF.17958.2	mRNA:Solyc06g073460.3.1	45418151	45418152	-	1^,2^	alternative donor site
SL3.0ch10	CUFF.26272.2	mRNA:Solyc10g007160.2.1	1604037	1604046	+	1^,2^	alternative donor site
SL3.0ch02	CUFF.6490.3	CUFF.6490.1	46821823	46822057	+	1^,2^	alternative donor site
SL3.0ch09	CUFF.24996.1	mRNA:Solyc09g059030.3.1	53242921	53242922	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g081920.3.1	CUFF.6419.2	46242096	46242097	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g086210.3.1	mRNA:Solyc02g086213.1.1	49581548	49581606	-	1^,2^	alternative donor site
SL3.0ch00	CUFF.273.1	mRNA:Solyc00g110870.3.1	15181447	15181448	-	1^,2^	alternative donor site
SL3.0ch02	CUFF.6844.1	mRNA:Solyc02g086440.3.1	49747127	49747292	+	1^,2^	alternative donor site
SL3.0ch00	mRNA:Solyc00g090115.1.1	mRNA:Solyc00g090630.2.1	14438710	14438790	-	1^,2^	alternative donor site
SL3.0ch00	mRNA:Solyc00g090115.1.1	mRNA:Solyc00g090630.2.1	14438503	14438550	-	1^,2^	alternative donor site
SL3.0ch09	mRNA:Solyc09g061685.1.1	mRNA:Solyc09g061690.1.1	60424076	60424094	-	1^,2^	alternative donor site
SL3.0ch00	mRNA:Solyc00g144470.1.1	mRNA:Solyc00g143777.1.1	16276033	16276060	+	1^,2^	alternative donor site
SL3.0ch02	CUFF.6723.2	mRNA:Solyc02g085420.3.1	48965893	48965894	-	1^,2^	alternative donor site
SL3.0ch02	CUFF.6633.2	CUFF.6633.3	47989613	47989672	+	1^,2^	alternative donor site
SL3.0ch00	CUFF.388.1	mRNA:Solyc00g289230.2.1	20061540	20061541	-	1^,2^	alternative donor site
SL3.0ch02	CUFF.7051.1	mRNA:Solyc02g088958.1.1	51529879	51530067	+	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g088590.3.1	CUFF.7029.3	51277167	51277172	+	1^,2^	alternative donor site
SL3.0ch04	mRNA:Solyc04g079020.3.1	mRNA:Solyc04g079010.1.1	63710116	63710351	+	1^,2^	alternative donor site
SL3.0ch04	CUFF.13139.1	mRNA:Solyc04g078970.2.1	63682296	63682297	-	1^,2^	alternative donor site
SL3.0ch02	CUFF.7014.3	CUFF.7014.2	51127886	51128189	-	1^,2^	alternative donor site
SL3.0ch00	mRNA:Solyc00g044755.1.1	mRNA:Solyc00g046580.1.1	12523026	12523086	-	1^,2^	alternative donor site
SL3.0ch06	mRNA:Solyc06g084610.3.1	mRNA:Solyc06g084615.1.1	49713478	49713482	-	1^,2^	alternative donor site
SL3.0ch04	CUFF.13321.1	mRNA:Solyc04g081235.1.1	65313913	65313914	-	1^,2^	alternative donor site
SL3.0ch02	mRNA:Solyc02g087220.3.1	mRNA:Solyc02g087215.1.1	50312819	50312905	-	1^,2^	alternative donor site
SL3.0ch12	CUFF.31118.2	mRNA:Solyc12g008980.2.1	2286550	2286551	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g026180.2.1	CUFF.14807.2	40032412	40032413	+	1-,2-	alternative acceptor site
SL3.0ch05	CUFF.15061.1	mRNA:Solyc05g041860.3.1	54642795	54642796	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g043270.1.1	mRNA:Solyc05g043234.1.1	56615322	56615331	-	1-,2-	alternative acceptor site
SL3.0ch09	mRNA:Solyc09g011590.3.1	mRNA:Solyc09g011600.3.1	4869984	4870023	+	1-,2-	alternative acceptor site
SL3.0ch09	mRNA:Solyc09g011320.3.1	CUFF.23897.2	4663039	4663040	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g050520.3.1	mRNA:Solyc05g050530.3.1	61518040	61518071	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g009850.3.1	mRNA:Solyc01g009845.1.1	4307840	4309298	+	1-,2-	alternative acceptor site
SL3.0ch08	CUFF.21905.1	mRNA:Solyc08g022070.3.1	33110253	33110255	+	1-,2-	alternative acceptor site
SL3.0ch10	CUFF.28489.2	mRNA:Solyc10g085335.1.1	64677821	64677842	+	1-,2-	alternative acceptor site
SL3.0ch10	mRNA:Solyc10g083710.2.1	mRNA:Solyc10g083720.2.1	63600353	63600413	+	1-,2-	alternative acceptor site
SL3.0ch10	mRNA:Solyc10g083710.2.1	mRNA:Solyc10g083720.2.1	63600560	63600572	+	1-,2-	alternative acceptor site
SL3.0ch10	mRNA:Solyc10g083710.2.1	mRNA:Solyc10g083720.2.1	63600811	63600817	+	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g080640.3.1	CUFF.6319.2	45384425	45384426	+	1-,2-	alternative acceptor site
SL3.0ch07	mRNA:Solyc07g027020.3.1	mRNA:Solyc07g027025.1.1	33211763	33211790	-	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g005170.2.1	CUFF.28602.2	155338	155339	+	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g005170.2.1	CUFF.28602.2	155648	155649	+	1-,2-	alternative acceptor site
SL3.0ch09	CUFF.24326.2	mRNA:Solyc09g018845.1.1	17583203	17583239	+	1-,2-	alternative acceptor site
SL3.0ch09	mRNA:Solyc09g018905.1.1	mRNA:Solyc09g018930.1.1	17742243	17742271	+	1-,2-	alternative acceptor site
SL3.0ch07	mRNA:Solyc07g052720.3.1	mRNA:Solyc07g052703.1.1	61292771	61292830	+	1-,2-	alternative acceptor site
SL3.0ch07	mRNA:Solyc07g053320.3.1	CUFF.20299.2	61918949	61918950	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g096640.3.1	mRNA:Solyc03g096645.1.1	60326702	60326723	-	1-,2-	alternative acceptor site
SL3.0ch00	CUFF.91.1	mRNA:Solyc00g009140.3.1	7889519	7889520	+	1-,2-	alternative acceptor site
SL3.0ch00	mRNA:Solyc00g009040.3.1	CUFF.79.2	7817340	7817341	+	1-,2-	alternative acceptor site
SL3.0ch07	CUFF.20168.1	mRNA:Solyc07g049670.3.1	60156697	60156698	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g095290.3.1	CUFF.9315.2	57751549	57751705	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.16323.2	mRNA:Solyc06g011540.3.1	8023382	8023463	+	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.5828.1	mRNA:Solyc02g070550.3.1	40862098	40862099	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.16021.2	mRNA:Solyc06g007930.3.1	1804207	1804209	+	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g071640.2.1	mRNA:Solyc02g071645.1.1	41597434	41597494	+	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g071475.1.1	mRNA:Solyc02g071480.3.1	41468331	41468401	-	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g071480.3.1	mRNA:Solyc02g071490.3.1	41468783	41468809	-	1-,2-	alternative acceptor site
SL3.0ch12	CUFF.30899.1	mRNA:Solyc12g005390.2.1	233054	233055	+	1-,2-	alternative acceptor site
SL3.0ch12	CUFF.30899.1	mRNA:Solyc12g005390.2.1	235250	235251	+	1-,2-	alternative acceptor site
SL3.0ch00	mRNA:Solyc00g020545.1.1	mRNA:Solyc00g020940.1.1	10948966	10949006	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.17622.1	mRNA:Solyc06g066830.3.1	42150998	42151033	-	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g066790.3.1	CUFF.17619.2	42094917	42094919	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g050805.1.1	CUFF.15390.2	61845699	61847012	+	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g072320.2.1	mRNA:Solyc11g072330.2.1	55830182	55830185	+	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g072320.2.1	mRNA:Solyc11g072330.2.1	55830955	55831057	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.15980.1	mRNA:Solyc06g007240.3.1	1299941	1299942	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.16019.2	mRNA:Solyc06g007855.1.1	1747047	1748375	-	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g051680.3.1	CUFF.15469.2	62934315	62934316	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.17577.1	mRNA:Solyc06g066340.3.1	41749698	41749699	+	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.9817.1	mRNA:Solyc03g113255.1.1	64935733	64935735	+	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g071260.3.1	CUFF.17799.2	43987545	43987546	+	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g068740.3.1	mRNA:Solyc06g068760.3.1	42733630	42733675	+	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g068740.3.1	mRNA:Solyc06g068760.3.1	42734875	42734878	+	1-,2-	alternative acceptor site
SL3.0ch11	CUFF.30683.1	mRNA:Solyc11g070080.1.1	54916727	54916728	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.17710.1	mRNA:Solyc06g069020.3.1	42949603	42949604	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.4109.2	mRNA:Solyc01g108600.3.1	95758810	95758811	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g108920.3.1	CUFF.4133.3	95969143	95969247	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g108940.2.1	mRNA:Solyc01g108930.3.1	95977995	95977998	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g111580.3.1	mRNA:Solyc03g111590.3.1	63703469	63703472	-	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g068660.2.1	CUFF.30570.2	53597849	53597850	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g109370.3.1	CUFF.4172.2	96264196	96264197	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g112830.3.1	CUFF.9795.2	64623612	64623614	+	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.9557.1	mRNA:Solyc03g098280.3.1	62065649	62065650	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.3973.1	mRNA:Solyc01g106950.3.1	94538300	94538301	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g107680.3.1	mRNA:Solyc01g107695.1.1	95046924	95046982	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.4066.2	mRNA:Solyc01g108035.1.1	95307825	95307826	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g108100.3.1	mRNA:Solyc01g108110.3.1	95356797	95357525	+	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g065557.1.1	mRNA:Solyc11g065560.1.1	51390277	51390301	+	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g065557.1.1	mRNA:Solyc11g065560.1.1	51391537	51391552	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g014630.2.1	CUFF.14111.2	8620461	8620462	+	1-,2-	alternative acceptor site
SL3.0ch10	mRNA:Solyc10g049665.1.1	mRNA:Solyc10g049680.1.1	46300206	46300284	+	1-,2-	alternative acceptor site
SL3.0ch12	mRNA:Solyc12g062790.1.1	mRNA:Solyc12g062737.1.1	34736323	34736331	-	1-,2-	alternative acceptor site
SL3.0ch12	CUFF.31994.1	mRNA:Solyc12g032955.1.1	37739235	37739237	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g053020.3.1	mRNA:Solyc03g053023.1.1	23699256	23699280	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g018340.3.1	CUFF.14380.2	20585717	20585718	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g016090.1.1	mRNA:Solyc05g016073.1.1	14446768	14446845	-	1-,2-	alternative acceptor site
SL3.0ch05	CUFF.14283.1	CUFF.14283.2	15430467	15431761	+	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.7235.1	CUFF.7235.4	53106099	53106100	+	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g091620.2.1	mRNA:Solyc02g091625.1.1	53507421	53507523	+	1-,2-	alternative acceptor site
SL3.0ch08	mRNA:Solyc08g005015.1.1	mRNA:Solyc08g005020.3.1	24479	24849	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.3181.1	mRNA:Solyc01g097010.3.1	87864718	87864719	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g097190.3.1	mRNA:Solyc01g097210.3.1	88019601	88019605	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.3164.2	mRNA:Solyc01g096740.3.1	87618793	87618819	-	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.7430.2	mRNA:Solyc02g093193.1.1	54775067	54775110	+	1-,2-	alternative acceptor site
SL3.0ch09	mRNA:Solyc09g098030.3.1	mRNA:Solyc09g098010.3.1	72434354	72434369	+	1-,2-	alternative acceptor site
SL3.0ch09	mRNA:Solyc09g098040.3.1	CUFF.26029.2	72458770	72458771	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g005030.3.1	mRNA:Solyc01g005050.3.1	58002	58030	+	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g069180.3.1	CUFF.5704.2	39704332	39704333	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.3262.3	mRNA:Solyc01g098030.3.1	88519320	88519321	+	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g069130.3.1	mRNA:Solyc02g069140.2.1	39656315	39656422	+	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.5563.1	mRNA:Solyc02g067800.3.1	38480970	38480971	+	1-,2-	alternative acceptor site
SL3.0ch07	mRNA:Solyc07g006160.3.1	CUFF.18566.2	998418	998419	+	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.5488.1	mRNA:Solyc02g067000.2.1	37811772	37812150	-	1-,2-	alternative acceptor site
SL3.0ch09	mRNA:Solyc09g091560.3.1	CUFF.25914.2	71299221	71299224	+	1-,2-	alternative acceptor site
SL3.0ch10	CUFF.27954.1	mRNA:Solyc10g074940.2.1	58724711	58724712	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g007790.3.1	CUFF.575.2	1882401	1882402	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.522.2	mRNA:Solyc01g006800.3.1	1366488	1366489	+	1-,2-	alternative acceptor site
SL3.0ch07	mRNA:Solyc07g007870.3.1	CUFF.18698.2	2552242	2552243	+	1-,2-	alternative acceptor site
SL3.0ch10	mRNA:Solyc10g076530.2.1	mRNA:Solyc10g076533.1.1	59612960	59612984	-	1-,2-	alternative acceptor site
SL3.0ch07	CUFF.18754.2	mRNA:Solyc07g008410.3.1	3208623	3208624	+	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.5402.1	CUFF.5402.4	36288310	36288379	+	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.5402.1	CUFF.5402.4	36288666	36288726	+	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g064804.1.1	mRNA:Solyc02g064810.1.1	36521925	36522077	-	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g099640.3.1	mRNA:Solyc01g099645.1.1	89698311	89698760	-	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g099440.3.1	mRNA:Solyc01g099450.3.1	89574184	89574198	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g099230.3.1	CUFF.3347.2	89411797	89411799	+	1-,2-	alternative acceptor site
SL3.0ch10	CUFF.28043.1	mRNA:Solyc10g078300.2.1	60266905	60266907	+	1-,2-	alternative acceptor site
SL3.0ch10	mRNA:Solyc10g080590.2.1	mRNA:Solyc10g080585.1.1	61938543	61938546	-	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g102270.2.1	mRNA:Solyc01g102265.1.1	90972874	90974221	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g102280.3.1	mRNA:Solyc01g102285.1.1	90975928	90975977	-	1-,2-	alternative acceptor site
SL3.0ch10	mRNA:Solyc10g080320.2.1	mRNA:Solyc10g080330.2.1	61742302	61742459	-	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g103250.3.1	mRNA:Solyc01g103245.1.1	91781319	91781331	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g103100.3.1	CUFF.3603.2	91648763	91648764	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g059160.2.1	mRNA:Solyc03g059155.1.1	30066118	30066212	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g102435.1.1	mRNA:Solyc01g102440.3.1	91132374	91132522	-	1-,2-	alternative acceptor site
SL3.0ch08	mRNA:Solyc08g006570.3.1	CUFF.21072.2	1177179	1177181	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g103940.3.1	CUFF.3679.2	92315195	92315196	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.3618.3	CUFF.3618.6	91815700	91815702	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g105660.3.1	CUFF.3885.2	93651044	93651045	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.16867.1	mRNA:Solyc06g050315.1.1	33044186	33044204	-	1-,2-	alternative acceptor site
SL3.0ch12	mRNA:Solyc12g017830.2.1	mRNA:Solyc12g017835.1.1	7453718	7453738	+	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g050170.3.1	CUFF.16846.2	32737634	32737635	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g082395.1.1	mRNA:Solyc03g082400.3.1	53779834	53779836	+	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.9160.1	mRNA:Solyc03g083410.3.1	54711972	54711973	+	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g036240.2.1	CUFF.16664.12	25807450	25807794	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.16664.7	CUFF.16664.9	25808062	25808255	+	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.8753.1	mRNA:Solyc03g063370.3.1	36740947	36741720	-	1-,2-	alternative acceptor site
SL3.0ch05	CUFF.14795.2	mRNA:Solyc05g026060.2.1	39707936	39707937	+	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g053660.3.1	CUFF.17125.2	36590294	36590296	+	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.8838.1	mRNA:Solyc03g065340.3.1	43666460	43666461	+	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.8838.1	mRNA:Solyc03g065340.3.1	43666785	43666787	+	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g051390.3.1	CUFF.16977.2	34817176	34817177	+	1-,2-	alternative acceptor site
SL3.0ch12	mRNA:Solyc12g013970.2.1	mRNA:Solyc12g013990.2.1	4820230	4820237	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g098520.3.1	mRNA:Solyc01g098523.1.1	88889145	88889233	-	1-,2-	alternative acceptor site
SL3.0ch12	mRNA:Solyc12g014400.2.1	mRNA:Solyc12g014397.1.1	5310192	5310276	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g098960.2.1	mRNA:Solyc01g098970.2.1	89204146	89204197	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g099030.3.1	mRNA:Solyc01g099040.3.1	89259325	89259361	-	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g052050.3.1	CUFF.17054.2	35803831	35803833	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.17030.1	mRNA:Solyc06g084760.2.1	35669569	35669570	+	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g044590.2.1	mRNA:Solyc11g044593.1.1	32658830	32658839	-	1-,2-	alternative acceptor site
SL3.0ch07	mRNA:Solyc07g061780.3.1	CUFF.20576.2	64868253	64868255	+	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g042855.1.1	mRNA:Solyc11g042830.1.1	34343444	34343461	-	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g081420.2.1	CUFF.2465.4	80485466	80485467	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.2537.3	CUFF.2537.2	81688644	81688932	-	1-,2-	alternative acceptor site
SL3.0ch11	CUFF.29867.1	mRNA:Solyc11g045510.2.1	30634513	30634518	-	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g028570.1.1	mRNA:Solyc04g028560.3.1	14833384	14833435	+	1-,2-	alternative acceptor site
SL3.0ch12	mRNA:Solyc12g089140.2.1	CUFF.32967.1	65215005	65215256	-	1-,2-	alternative acceptor site
SL3.0ch12	mRNA:Solyc12g088620.1.1	mRNA:Solyc12g088613.1.1	64877719	64877742	-	1-,2-	alternative acceptor site
SL3.0ch04	CUFF.11717.3	mRNA:Solyc04g025300.3.1	24256612	24256613	+	1-,2-	alternative acceptor site
SL3.0ch12	mRNA:Solyc12g049460.2.1	CUFF.32704.3	61991955	61992006	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g068540.3.1	mRNA:Solyc01g068545.1.1	77581614	77581653	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g007590.3.1	mRNA:Solyc03g007595.1.1	2141956	2142012	-	1-,2-	alternative acceptor site
SL3.0ch04	CUFF.11577.2	CUFF.11577.1	18213664	18213717	-	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g005310.2.1	mRNA:Solyc02g005320.2.1	8052042	8052090	-	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g014670.3.1	CUFF.11235.2	4936804	4936805	+	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.4555.1	CUFF.4555.4	7354167	7354169	+	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g050572.1.1	mRNA:Solyc04g050580.1.1	47576577	47576865	+	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g016010.3.1	mRNA:Solyc04g016015.1.1	6620740	6620775	+	1-,2-	alternative acceptor site
SL3.0ch04	CUFF.11299.1	mRNA:Solyc04g015560.3.1	5824283	5824284	+	1-,2-	alternative acceptor site
SL3.0ch07	CUFF.20737.1	mRNA:Solyc07g064260.2.1	66612635	66612636	+	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g021270.3.1	mRNA:Solyc02g021273.1.1	22885230	22885775	-	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.5041.1	mRNA:Solyc02g031770.3.1	27399531	27399532	+	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g040390.2.1	CUFF.30128.2	37946200	37946201	+	1-,2-	alternative acceptor site
SL3.0ch07	mRNA:Solyc07g063040.3.1	CUFF.20674.2	65768493	65768495	+	1-,2-	alternative acceptor site
SL3.0ch07	mRNA:Solyc07g062910.3.1	mRNA:Solyc07g062907.1.1	65672975	65672983	+	1-,2-	alternative acceptor site
SL3.0ch04	CUFF.11968.1	mRNA:Solyc04g049130.3.1	39698219	39698220	+	1-,2-	alternative acceptor site
SL3.0ch04	CUFF.11148.1	mRNA:Solyc04g011480.3.1	3921536	3921537	+	1-,2-	alternative acceptor site
SL3.0ch08	CUFF.23041.1	mRNA:Solyc08g077550.3.1	61649809	61649810	+	1-,2-	alternative acceptor site
SL3.0ch08	mRNA:Solyc08g077690.3.1	mRNA:Solyc08g077685.1.1	61720279	61720285	+	1-,2-	alternative acceptor site
SL3.0ch07	mRNA:Solyc07g063735.1.1	mRNA:Solyc07g063800.2.1	66274073	66274079	-	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g009510.3.1	mRNA:Solyc04g009520.3.1	2942065	2942224	+	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g009435.1.1	mRNA:Solyc04g009440.3.1	2857894	2857930	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g012790.3.1	CUFF.13955.2	5962115	5962116	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g013345.1.1	mRNA:Solyc05g013360.3.1	6443611	6443626	-	1-,2-	alternative acceptor site
SL3.0ch05	CUFF.14059.2	mRNA:Solyc05g014110.3.1	7799995	7799996	+	1-,2-	alternative acceptor site
SL3.0ch07	CUFF.20442.1	mRNA:Solyc07g055160.3.1	63410380	63410422	-	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.10628.1	mRNA:Solyc03g122040.3.1	71525544	71525545	+	1-,2-	alternative acceptor site
SL3.0ch09	mRNA:Solyc09g082505.1.1	CUFF.25682.2	68647353	68647354	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g090860.3.1	CUFF.2840.2	84462412	84462413	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.2828.1	mRNA:Solyc01g090730.3.1	84246980	84246982	+	1-,2-	alternative acceptor site
SL3.0ch12	mRNA:Solyc12g036860.2.1	CUFF.32244.2	48502728	48502729	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.2779.1	mRNA:Solyc01g090170.3.1	83679803	83679804	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g088780.3.1	mRNA:Solyc01g088800.3.1	83397330	83397362	+	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g063360.3.1	CUFF.12537.2	55484083	55484084	+	1-,2-	alternative acceptor site
SL3.0ch12	mRNA:Solyc12g100140.2.1	CUFF.33217.2	67963280	67963281	+	1-,2-	alternative acceptor site
SL3.0ch12	mRNA:Solyc12g100350.2.1	mRNA:Solyc12g100353.1.1	68109475	68109535	+	1-,2-	alternative acceptor site
SL3.0ch08	CUFF.22441.2	CUFF.22441.4	53809374	53809695	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.1709.1	mRNA:Solyc01g057473.1.1	61026111	61026112	+	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.10606.1	mRNA:Solyc03g121730.3.1	71290127	71290129	+	1-,2-	alternative acceptor site
SL3.0ch09	mRNA:Solyc09g005670.2.1	CUFF.23521.2	470297	470300	-	1-,2-	alternative acceptor site
SL3.0ch09	CUFF.23537.1	mRNA:Solyc09g005980.3.1	672910	672911	+	1-,2-	alternative acceptor site
SL3.0ch08	mRNA:Solyc08g066365.1.1	mRNA:Solyc08g066370.2.1	55026974	55027103	+	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g010400.2.1	mRNA:Solyc11g010410.2.1	3482319	3482572	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.1768.1	mRNA:Solyc01g057690.2.1	63469131	63469140	-	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g121130.3.1	mRNA:Solyc03g121140.3.1	70831628	70831914	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g121170.3.1	mRNA:Solyc03g121180.3.1	70840253	70840289	-	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g007940.3.1	mRNA:Solyc04g007945.1.1	1586562	1586594	-	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g008010.3.1	mRNA:Solyc04g008020.3.1	1674739	1675360	-	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g058320.3.1	CUFF.1836.2	66033170	66033171	+	1-,2-	alternative acceptor site
SL3.0ch04	CUFF.12632.2	mRNA:Solyc04g071155.1.1	58162047	58162390	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g120440.2.1	mRNA:Solyc03g120430.3.1	70307901	70307958	-	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g120000.3.1	mRNA:Solyc03g120010.3.1	69992908	69993027	-	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.10473.1	mRNA:Solyc03g120130.3.1	70102493	70102494	+	1-,2-	alternative acceptor site
SL3.0ch08	CUFF.22628.3	mRNA:Solyc08g067730.2.1	56772157	56772181	-	1-,2-	alternative acceptor site
SL3.0ch08	mRNA:Solyc08g068090.3.1	CUFF.22679.3	57236047	57236049	+	1-,2-	alternative acceptor site
SL3.0ch01	CUFF.1263.1	mRNA:Solyc01g020240.3.1	27887233	27887234	+	1-,2-	alternative acceptor site
SL3.0ch08	mRNA:Solyc08g068270.3.1	CUFF.22690.4	57424941	57425140	-	1-,2-	alternative acceptor site
SL3.0ch04	CUFF.10819.1	mRNA:Solyc04g006930.3.1	619540	619541	+	1-,2-	alternative acceptor site
SL3.0ch09	CUFF.23705.1	mRNA:Solyc09g008990.3.1	2359976	2360036	+	1-,2-	alternative acceptor site
SL3.0ch09	CUFF.23705.1	mRNA:Solyc09g009010.3.1	2360605	2360608	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g021640.3.1	CUFF.1339.2	32407053	32407054	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g056290.3.1	CUFF.15816.2	66476147	66476148	+	1-,2-	alternative acceptor site
SL3.0ch08	mRNA:Solyc08g074600.3.1	mRNA:Solyc08g074605.1.1	58847111	58847150	-	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g044490.3.1	mRNA:Solyc01g044480.3.1	44036717	44047598	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g055710.3.1	CUFF.15761.2	66100707	66100709	+	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g077300.3.1	mRNA:Solyc04g077330.3.1	62352794	62352806	+	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g077330.3.1	mRNA:Solyc04g077310.3.1	62356691	62356826	+	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g077330.3.1	mRNA:Solyc04g077380.2.1	62384944	62384981	+	1-,2-	alternative acceptor site
SL3.0ch08	mRNA:Solyc08g075310.3.1	CUFF.22863.2	59537944	59537945	+	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g049910.3.1	CUFF.1496.3	47058247	47059170	-	1-,2-	alternative acceptor site
SL3.0ch01	mRNA:Solyc01g049910.3.1	mRNA:Solyc01g049914.1.1	47072578	47072585	-	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g076610.2.1	mRNA:Solyc04g076620.3.1	61587060	61587095	-	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g076530.3.1	mRNA:Solyc04g076527.1.1	61510989	61511281	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g054540.3.1	CUFF.15671.2	65290675	65290676	+	1-,2-	alternative acceptor site
SL3.0ch05	mRNA:Solyc05g054540.3.1	CUFF.15671.2	65290882	65290883	+	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g078565.1.1	mRNA:Solyc04g078580.1.1	63357646	63357799	-	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.9981.1	mRNA:Solyc03g114965.1.1	66304196	66304197	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g115250.3.1	CUFF.10024.3	66531876	66531877	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g115250.3.1	CUFF.10024.3	66540992	66540993	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g115220.3.1	mRNA:Solyc03g115200.3.1	66481542	66481634	-	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g114640.3.1	CUFF.9952.2	66047654	66047656	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g114300.3.1	CUFF.9916.2	65799471	65799472	+	1-,2-	alternative acceptor site
SL3.0ch11	mRNA:Solyc11g012810.2.1	mRNA:Solyc11g012813.1.1	5594363	5594618	+	1-,2-	alternative acceptor site
SL3.0ch03	mRNA:Solyc03g118943.1.1	mRNA:Solyc03g118950.2.1	69191487	69191785	+	1-,2-	alternative acceptor site
SL3.0ch11	CUFF.29331.1	mRNA:Solyc11g018530.2.1	8649267	8649282	-	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.10143.1	mRNA:Solyc03g116780.3.1	67545076	67545152	+	1-,2-	alternative acceptor site
SL3.0ch03	CUFF.10143.1	mRNA:Solyc03g116790.3.1	67554765	67554766	+	1-,2-	alternative acceptor site
SL3.0ch11	CUFF.29407.2	mRNA:Solyc11g019920.2.1	9807765	9807766	+	1-,2-	alternative acceptor site
SL3.0ch08	mRNA:Solyc08g062770.3.1	CUFF.22338.2	51950392	51950393	+	1-,2-	alternative acceptor site
SL3.0ch06	CUFF.18254.2	mRNA:Solyc06g082390.3.1	48264442	48264443	+	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g076280.2.1	mRNA:Solyc06g076290.1.1	47545272	47545280	+	1-,2-	alternative acceptor site
SL3.0ch10	mRNA:Solyc10g005770.3.1	mRNA:Solyc10g005780.3.1	619813	619840	-	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.6558.1	mRNA:Solyc02g083450.3.1	47407172	47407173	+	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.6475.1	mRNA:Solyc02g082435.1.1	46683814	46683847	-	1-,2-	alternative acceptor site
SL3.0ch02	CUFF.6475.1	mRNA:Solyc02g082435.1.1	46682434	46683592	-	1-,2-	alternative acceptor site
SL3.0ch06	mRNA:Solyc06g072500.2.1	mRNA:Solyc06g072510.3.1	44855845	44855862	+	1-,2-	alternative acceptor site
SL3.0ch09	CUFF.25029.1	mRNA:Solyc09g059290.3.1	54400076	54400392	+	1-,2-	alternative acceptor site
SL3.0ch09	CUFF.25029.1	mRNA:Solyc09g059290.3.1	54400611	54400612	+	1-,2-	alternative acceptor site
SL3.0ch09	CUFF.25264.1	mRNA:Solyc09g064660.3.1	62212351	62212353	+	1-,2-	alternative acceptor site
SL3.0ch00	mRNA:Solyc00g249200.2.1	mRNA:Solyc00g249205.1.1	19131695	19131813	-	1-,2-	alternative acceptor site
SL3.0ch04	mRNA:Solyc04g079780.3.1	mRNA:Solyc04g079790.3.1	64203467	64203472	-	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g088430.1.1	mRNA:Solyc02g088423.1.1	51157475	51157600	+	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g087760.3.1	CUFF.6970.2	50707566	50707567	+	1-,2-	alternative acceptor site
SL3.0ch04	CUFF.13318.1	mRNA:Solyc04g081200.3.1	65285542	65285544	+	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g087470.3.1	mRNA:Solyc02g087465.1.1	50539701	50539709	-	1-,2-	alternative acceptor site
SL3.0ch02	mRNA:Solyc02g087130.3.1	CUFF.6907.2	50270381	50270382	+	1-,2-	alternative acceptor site
SL3.0ch12	CUFF.31024.1	mRNA:Solyc12g007000.2.1	1441085	1442700	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	CUFF.14916.1	mRNA:Solyc05g032700.3.1	45958786	45960743	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.609.1	mRNA:Solyc01g008190.3.1	2277323	2277805	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.629.1	CUFF.629.2	2419732	2420294	+	1^2-3^4-5^6-,0	complex events
SL3.0ch09	mRNA:Solyc09g014160.2.1	CUFF.23956.2	5596356	5598637	+	1^2-3^4-5^6-,0	complex events
SL3.0ch09	CUFF.23832.1	mRNA:Solyc09g010320.3.1	3699947	3704282	-	1^2-3^4-5^6-,0	complex events
SL3.0ch05	CUFF.15262.3	mRNA:Solyc05g046287.1.1	59327097	59327650	+	1^2-3^4-5^6-,0	complex events
SL3.0ch08	CUFF.21990.2	CUFF.21990.3	38124563	38125087	-	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.28454.2	mRNA:Solyc10g084745.1.1	64282396	64283568	-	1^2-3^4-5^6-,0	complex events
SL3.0ch08	CUFF.21968.1	mRNA:Solyc08g029220.2.1	37500690	37503364	+	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.19845.1	mRNA:Solyc07g042293.1.1	55539577	55540862	-	1^2-3^4-5^6-,0	complex events
SL3.0ch08	CUFF.21435.1	mRNA:Solyc08g016210.3.1	7096415	7097418	-	1^2-3^4-5^6-,0	complex events
SL3.0ch08	CUFF.21443.1	mRNA:Solyc08g016310.3.1	7195045	7197765	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.9413.2	mRNA:Solyc03g096620.2.1	60268555	60268913	+	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.12429.2	CUFF.12429.1	54158329	54158816	+	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.6111.1	mRNA:Solyc02g077920.3.1	43311339	43312683	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.9439.1	mRNA:Solyc03g096965.1.1	60776039	60776834	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.9485.3	CUFF.9485.2	61229736	61232624	-	1^2-3^4-5^6-,0	complex events
SL3.0ch07	mRNA:Solyc07g049210.3.1	CUFF.20112.1	59624538	59627935	-	1^2-3^4-5^6-,0	complex events
SL3.0ch11	CUFF.28911.2	CUFF.28911.3	3087680	3088308	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.9257.2	mRNA:Solyc03g093630.2.1	56587056	56587235	-	1^2-3^4-5^6-,0	complex events
SL3.0ch11	mRNA:Solyc11g008540.2.1	CUFF.28873.2	2721065	2721856	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.16437.2	mRNA:Solyc06g019200.3.1	18186142	18186626	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	mRNA:Solyc02g079360.2.1	CUFF.6232.2	44510322	44511825	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	mRNA:Solyc03g095290.3.1	mRNA:Solyc03g095305.1.1	57750708	57750995	+	1^2-3^4-5^6-,0	complex events
SL3.0ch07	mRNA:Solyc07g047620.2.1	CUFF.20054.2	58987916	58989852	-	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.20091.1	mRNA:Solyc07g048090.2.1	59404155	59404533	-	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.20056.1	mRNA:Solyc07g047680.2.1	59041302	59041526	+	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.5728.1	mRNA:Solyc02g069430.3.1	39890349	39891035	+	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.5816.1	mRNA:Solyc02g070390.3.1	40685101	40686673	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.5836.1	mRNA:Solyc02g070710.2.1	40934890	40935107	-	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.17297.1	CUFF.17297.2	38671054	38673766	+	1^2-3^4-5^6-,0	complex events
SL3.0ch00	mRNA:Solyc00g014830.3.1	CUFF.138.2	10122271	10125507	-	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.16040.1	mRNA:Solyc06g008180.2.1	2054608	2055409	-	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.17500.1	mRNA:Solyc06g065300.3.1	40840110	40841175	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.5931.1	mRNA:Solyc02g071675.1.1	41613586	41614077	+	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.5915.1	mRNA:Solyc02g071587.1.1	41554325	41554862	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	mRNA:Solyc02g070855.1.1	CUFF.5852.2	41011047	41011394	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.16100.2	CUFF.16100.1	2752957	2753613	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.5996.1	mRNA:Solyc02g072530.2.1	42288711	42289758	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	CUFF.15430.2	mRNA:Solyc05g051340.2.1	62462794	62464573	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	mRNA:Solyc06g066035.1.1	CUFF.17562.3	41510388	41512096	-	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.15943.1	mRNA:Solyc06g005980.3.1	966511	967265	-	1^2-3^4-5^6-,0	complex events
SL3.0ch06	mRNA:Solyc06g007430.2.1	CUFF.15993.2	1445598	1447359	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	mRNA:Solyc06g069460.2.1	CUFF.17748.2	43325965	43326253	-	1^2-3^4-5^6-,0	complex events
SL3.0ch11	mRNA:Solyc11g071420.2.1	CUFF.30723.3	55200264	55200537	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.9808.1	mRNA:Solyc03g113060.3.1	64839338	64840606	-	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.17734.3	mRNA:Solyc06g069350.2.1	43217926	43218877	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.4145.2	mRNA:Solyc01g108990.3.1	96007659	96008716	-	1^2-3^4-5^6-,0	complex events
SL3.0ch11	CUFF.30573.1	mRNA:Solyc11g068710.2.1	53632576	53632830	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.17846.2	mRNA:Solyc06g072012.1.1	44527665	44528243	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.17821.2	mRNA:Solyc06g071620.3.1	44250066	44254626	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.4007.1	mRNA:Solyc01g107270.3.1	94766890	94767913	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.4031.1	mRNA:Solyc01g107625.1.1	95010451	95011708	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.4066.1	CUFF.4066.2	95307283	95309531	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.4066.1	mRNA:Solyc01g108035.1.1	95307283	95309531	+	1^2-3^4-5^6-,0	complex events
SL3.0ch11	CUFF.30363.1	CUFF.30363.2	50770815	50772252	-	1^2-3^4-5^6-,0	complex events
SL3.0ch12	CUFF.31817.1	mRNA:Solyc12g070113.1.1	29623497	29624346	+	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.27513.1	mRNA:Solyc10g049920.2.1	47047844	47049497	-	1^2-3^4-5^6-,0	complex events
SL3.0ch12	CUFF.32047.1	mRNA:Solyc12g035420.2.1	40381454	40381919	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.8493.1	mRNA:Solyc03g053105.1.1	24264141	24265471	-	1^2-3^4-5^6-,0	complex events
SL3.0ch05	mRNA:Solyc05g018233.1.1	mRNA:Solyc05g018235.1.1	20275193	20276058	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.8411.2	mRNA:Solyc03g071533.1.1	20027136	20027811	-	1^2-3^4-5^6-,0	complex events
SL3.0ch05	CUFF.14276.1	mRNA:Solyc05g016240.3.1	15267725	15268219	-	1^2-3^4-5^6-,0	complex events
SL3.0ch05	CUFF.14163.2	CUFF.14163.3	10568950	10570169	+	1^2-3^4-5^6-,0	complex events
SL3.0ch10	mRNA:Solyc10g052545.1.1	CUFF.27709.2	52872741	52873209	+	1^2-3^4-5^6-,0	complex events
SL3.0ch09	CUFF.26040.2	mRNA:Solyc09g098130.2.1	72532985	72533205	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	mRNA:Solyc01g095600.3.1	CUFF.3064.2	86689862	86692794	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	mRNA:Solyc01g095990.3.1	mRNA:Solyc01g095995.1.1	86981789	86982601	+	1^2-3^4-5^6-,0	complex events
SL3.0ch08	mRNA:Solyc08g006470.3.1	mRNA:Solyc08g006475.1.1	1068024	1069710	+	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.19038.2	mRNA:Solyc07g018035.1.1	8929792	8930860	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.5504.1	mRNA:Solyc02g067120.3.1	37910426	37912168	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.5515.1	CUFF.5515.3	38019693	38025871	-	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.27892.1	CUFF.27892.4	57346877	57347351	+	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.27892.1	CUFF.27892.3	57346877	57347561	+	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.27892.1	CUFF.27892.5	57347084	57347561	+	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.5543.1	mRNA:Solyc02g067620.2.1	38319698	38321717	-	1^2-3^4-5^6-,0	complex events
SL3.0ch09	CUFF.25943.1	mRNA:Solyc09g091855.1.1	71542291	71542961	-	1^2-3^4-5^6-,0	complex events
SL3.0ch10	mRNA:Solyc10g074850.2.1	CUFF.27942.3	58627717	58628153	+	1^2-3^4-5^6-,0	complex events
SL3.0ch02	mRNA:Solyc02g065080.3.1	CUFF.5429.1	36816110	36824181	-	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.28110.1	mRNA:Solyc10g079120.2.1	60859197	60859854	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.3364.1	mRNA:Solyc01g099450.3.1	89572137	89574184	+	1^2-3^4-5^6-,0	complex events
SL3.0ch10	mRNA:Solyc10g080450.2.1	CUFF.28226.2	61851526	61851881	-	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.19352.1	mRNA:Solyc07g025490.2.1	28714115	28718833	-	1^2-3^4-5^6-,0	complex events
SL3.0ch10	mRNA:Solyc10g080180.2.1	CUFF.28201.3	61671224	61671465	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.3497.2	CUFF.3497.3	90715286	90716246	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.3613.2	mRNA:Solyc01g103240.3.1	91770349	91771518	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.8603.1	mRNA:Solyc03g058917.1.1	28957490	28959170	+	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.19275.4	CUFF.19275.2	24476714	24477556	+	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.28168.1	mRNA:Solyc10g079830.2.1	61444391	61445179	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.3702.1	mRNA:Solyc01g104160.3.1	92522410	92525653	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	mRNA:Solyc01g103785.1.1	CUFF.3669.2	92197060	92198195	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.3650.1	mRNA:Solyc01g103610.3.1	92059897	92060552	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.3774.1	mRNA:Solyc01g104500.2.1	92860658	92861528	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.3738.1	mRNA:Solyc01g104432.1.1	92717474	92718090	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	mRNA:Solyc01g104434.1.1	CUFF.3748.4	92744243	92745558	-	1^2-3^4-5^6-,0	complex events
SL3.0ch08	CUFF.21243.3	CUFF.21243.1	2641590	2642347	-	1^2-3^4-5^6-,0	complex events
SL3.0ch08	CUFF.21243.3	CUFF.21243.1	2640538	2640818	-	1^2-3^4-5^6-,0	complex events
SL3.0ch08	mRNA:Solyc08g013750.3.1	mRNA:Solyc08g013754.1.1	3215210	3215387	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.16928.1	mRNA:Solyc06g050833.1.1	33733550	33738720	-	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.16789.2	mRNA:Solyc06g048637.1.1	31509004	31509486	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.16807.1	mRNA:Solyc06g048865.1.1	31922840	31924461	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	mRNA:Solyc05g021145.1.1	CUFF.14509.2	26560637	26561017	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.9188.1	mRNA:Solyc03g083665.1.1	55051879	55052159	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	mRNA:Solyc03g063493.1.1	CUFF.8758.2	36822246	36822488	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.8753.1	CUFF.8753.4	36741720	36742273	-	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.27331.2	mRNA:Solyc10g047540.2.1	41019916	41020148	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.17210.3	mRNA:Solyc06g054455.1.1	37340867	37341227	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	mRNA:Solyc06g054455.1.1	CUFF.17210.5	37340773	37341126	+	1^2-3^4-5^6-,0	complex events
SL3.0ch12	mRNA:Solyc12g015730.2.1	CUFF.31419.2	5715995	5716394	+	1^2-3^4-5^6-,0	complex events
SL3.0ch06	CUFF.17092.2	mRNA:Solyc06g053370.2.1	36207396	36208812	-	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.27181.1	mRNA:Solyc10g045175.1.1	31827387	31827790	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	mRNA:Solyc03g013270.1.1	mRNA:Solyc03g013304.1.1	47777550	47778674	-	1^2-3^4-5^6-,0	complex events
SL3.0ch12	mRNA:Solyc12g014140.2.1	CUFF.31370.2	4951685	4952019	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	mRNA:Solyc01g098450.3.1	CUFF.3295.2	88846786	88849822	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	mRNA:Solyc01g098790.2.1	mRNA:Solyc01g098805.1.1	89093917	89094498	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	mRNA:Solyc03g077925.1.1	CUFF.8905.2	49982692	49983010	+	1^2-3^4-5^6-,0	complex events
SL3.0ch12	CUFF.32580.1	mRNA:Solyc12g043090.2.1	59686842	59688834	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.7747.1	mRNA:Solyc03g007395.1.1	1938269	1940968	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.7705.2	mRNA:Solyc03g006760.3.1	1291835	1293427	+	1^2-3^4-5^6-,0	complex events
SL3.0ch12	CUFF.32557.1	mRNA:Solyc12g042880.2.1	59267167	59268702	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.7706.1	mRNA:Solyc03g006780.2.1	1308377	1309763	+	1^2-3^4-5^6-,0	complex events
SL3.0ch12	CUFF.32562.1	mRNA:Solyc12g042960.2.1	59401402	59402387	+	1^2-3^4-5^6-,0	complex events
SL3.0ch10	mRNA:Solyc10g009100.2.1	CUFF.26427.2	3104702	3105265	-	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.18474.1	mRNA:Solyc07g005240.3.1	215076	216408	-	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.26324.2	mRNA:Solyc10g007780.2.1	2005611	2005843	+	1^2-3^4-5^6-,0	complex events
SL3.0ch08	mRNA:Solyc08g083210.3.1	mRNA:Solyc08g083215.1.1	65869239	65870215	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	mRNA:Solyc01g086745.1.1	mRNA:Solyc01g086750.3.1	81574515	81576012	-	1^2-3^4-5^6-,0	complex events
SL3.0ch08	CUFF.23333.1	mRNA:Solyc08g081880.2.1	64924374	64925008	+	1^2-3^4-5^6-,0	complex events
SL3.0ch11	CUFF.29870.2	CUFF.29870.3	30652362	30653033	-	1^2-3^4-5^6-,0	complex events
SL3.0ch12	CUFF.32541.1	mRNA:Solyc12g042560.2.1	58833032	58833571	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.11560.1	mRNA:Solyc04g026315.1.1	17107948	17108377	-	1^2-3^4-5^6-,0	complex events
SL3.0ch12	mRNA:Solyc12g088250.2.1	CUFF.32933.2	64693707	64694089	+	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.12398.1	mRNA:Solyc04g054910.3.1	53347111	53347660	+	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.11493.1	mRNA:Solyc04g039800.2.1	12541714	12541926	+	1^2-3^4-5^6-,0	complex events
SL3.0ch12	mRNA:Solyc12g089195.1.1	CUFF.32973.2	65300474	65300668	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.11697.2	mRNA:Solyc04g025450.2.1	22832970	22834292	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	mRNA:Solyc03g007530.3.1	mRNA:Solyc03g007545.1.1	2111479	2112052	+	1^2-3^4-5^6-,0	complex events
SL3.0ch12	mRNA:Solyc12g056290.2.1	CUFF.32801.3	63189775	63190759	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.7779.2	CUFF.7779.3	2433664	2434447	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	mRNA:Solyc04g050225.1.1	CUFF.12118.2	46218310	46219221	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	mRNA:Solyc04g014540.2.1	CUFF.11221.3	4815624	4815841	+	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.12305.1	mRNA:Solyc04g051880.2.1	51114928	51117622	-	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.20743.1	mRNA:Solyc07g064320.2.1	66649704	66650043	-	1^2-3^4-5^6-,0	complex events
SL3.0ch07	mRNA:Solyc07g065220.2.1	mRNA:Solyc07g065230.1.1	67211417	67211756	+	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.20822.1	mRNA:Solyc07g065445.1.1	67323138	67323611	-	1^2-3^4-5^6-,0	complex events
SL3.0ch08	mRNA:Solyc08g080225.1.1	CUFF.23222.3	63678395	63679423	-	1^2-3^4-5^6-,0	complex events
SL3.0ch08	CUFF.23191.1	mRNA:Solyc08g079640.2.1	63239053	63239760	+	1^2-3^4-5^6-,0	complex events
SL3.0ch09	CUFF.25364.1	mRNA:Solyc09g065580.3.1	63966032	63968056	+	1^2-3^4-5^6-,0	complex events
SL3.0ch11	CUFF.30108.2	CUFF.30108.1	36454198	36455025	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.11981.1	mRNA:Solyc04g049150.2.1	39843490	39846678	+	1^2-3^4-5^6-,0	complex events
SL3.0ch04	mRNA:Solyc04g011610.2.1	CUFF.11157.3	4049454	4050325	+	1^2-3^4-5^6-,0	complex events
SL3.0ch04	mRNA:Solyc04g011460.2.1	CUFF.11146.2	3900709	3901034	-	1^2-3^4-5^6-,0	complex events
SL3.0ch11	mRNA:Solyc11g039980.2.1	mRNA:Solyc11g039990.1.1	40538985	40539264	+	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.20704.1	mRNA:Solyc07g063475.1.1	66093263	66094681	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	mRNA:Solyc05g012690.3.1	CUFF.13950.2	5882661	5883443	-	1^2-3^4-5^6-,0	complex events
SL3.0ch05	CUFF.13867.1	mRNA:Solyc05g011960.3.1	5178350	5179121	+	1^2-3^4-5^6-,0	complex events
SL3.0ch09	mRNA:Solyc09g066500.3.1	mRNA:Solyc09g066505.1.1	65137932	65140074	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	mRNA:Solyc05g013970.3.1	CUFF.14054.2	7472602	7473741	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	CUFF.13671.1	mRNA:Solyc05g008300.2.1	2673225	2674115	-	1^2-3^4-5^6-,0	complex events
SL3.0ch05	mRNA:Solyc05g008440.2.1	CUFF.13681.2	2798296	2798517	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	mRNA:Solyc05g008440.2.1	CUFF.13681.3	2798127	2798454	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	CUFF.13625.1	mRNA:Solyc05g007810.3.1	2246652	2247254	-	1^2-3^4-5^6-,0	complex events
SL3.0ch05	CUFF.13620.2	mRNA:Solyc05g007755.1.1	2221522	2221974	+	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.20472.1	mRNA:Solyc07g055630.3.1	63723997	63724696	-	1^2-3^4-5^6-,0	complex events
SL3.0ch07	CUFF.20474.1	mRNA:Solyc07g055640.1.1	63731274	63732885	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	mRNA:Solyc05g010240.3.1	mRNA:Solyc05g010245.1.1	4420599	4421608	+	1^2-3^4-5^6-,0	complex events
SL3.0ch07	mRNA:Solyc07g055020.3.1	CUFF.20421.3	63302829	63303483	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.3033.1	mRNA:Solyc01g095060.3.1	86298484	86300826	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	mRNA:Solyc03g031440.3.1	CUFF.7930.3	4011431	4011889	+	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.7901.1	CUFF.7901.3	3704928	3705613	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.2970.3	mRNA:Solyc01g094540.3.1	85847607	85848189	-	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.26959.1	mRNA:Solyc10g039360.2.1	21374558	21375480	+	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.2720.1	CUFF.2720.3	83281471	83282645	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	CUFF.2626.3	CUFF.2626.1	82225025	82228000	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.8356.1	mRNA:Solyc03g046275.1.1	12151208	12152601	+	1^2-3^4-5^6-,0	complex events
SL3.0ch10	mRNA:Solyc10g018540.2.1	CUFF.26669.2	8705024	8705461	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	mRNA:Solyc04g063340.2.1	CUFF.12536.2	55458168	55460373	+	1^2-3^4-5^6-,0	complex events
SL3.0ch09	CUFF.23469.1	mRNA:Solyc09g005170.2.1	156736	157193	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.12480.1	CUFF.12480.3	55043553	55047261	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	mRNA:Solyc04g009300.3.1	CUFF.11036.2	2743134	2743940	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.12648.2	mRNA:Solyc04g071285.1.1	58300865	58301379	+	1^2-3^4-5^6-,0	complex events
SL3.0ch08	mRNA:Solyc08g067740.3.1	CUFF.22628.1	56771801	56772262	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	mRNA:Solyc03g119570.2.1	CUFF.10424.2	69616246	69617343	+	1^2-3^4-5^6-,0	complex events
SL3.0ch04	mRNA:Solyc04g005410.2.1	CUFF.10777.2	287336	287785	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.12786.1	mRNA:Solyc04g072600.2.1	59655103	59656078	+	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.12806.1	CUFF.12807.1	59866514	59868427	-	1^2-3^4-5^6-,0	complex events
SL3.0ch08	CUFF.22824.1	mRNA:Solyc08g074865.1.1	59124991	59125389	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	CUFF.15686.1	mRNA:Solyc05g054800.2.1	65473169	65473975	-	1^2-3^4-5^6-,0	complex events
SL3.0ch04	CUFF.12987.2	mRNA:Solyc04g076940.3.1	61966515	61967016	+	1^2-3^4-5^6-,0	complex events
SL3.0ch05	mRNA:Solyc05g053900.3.1	CUFF.15619.2	64770321	64771385	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	mRNA:Solyc03g115163.1.1	CUFF.10006.3	66453668	66454213	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.10006.3	CUFF.10006.6	66458858	66459355	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.9958.1	mRNA:Solyc03g114705.1.1	66087102	66087753	+	1^2-3^4-5^6-,0	complex events
SL3.0ch11	CUFF.29119.2	mRNA:Solyc11g012570.2.1	5376633	5378271	-	1^2-3^4-5^6-,0	complex events
SL3.0ch12	CUFF.33085.1	mRNA:Solyc12g096710.2.1	66501532	66503397	+	1^2-3^4-5^6-,0	complex events
SL3.0ch11	CUFF.29232.1	mRNA:Solyc11g013390.2.1	6374284	6374601	-	1^2-3^4-5^6-,0	complex events
SL3.0ch03	CUFF.10127.2	mRNA:Solyc03g116465.1.1	67367078	67367676	-	1^2-3^4-5^6-,0	complex events
SL3.0ch06	mRNA:Solyc06g074200.3.1	CUFF.18016.1	46018384	46019073	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.6585.2	CUFF.6585.3	47606710	47609425	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.6490.3	mRNA:Solyc02g082613.1.1	46822403	46822889	+	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.6490.2	mRNA:Solyc02g082613.1.1	46822569	46823163	+	1^2-3^4-5^6-,0	complex events
SL3.0ch10	CUFF.26306.1	mRNA:Solyc10g007500.3.1	1822899	1823251	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	mRNA:Solyc02g086210.3.1	mRNA:Solyc02g086213.1.1	49577505	49581325	-	1^2-3^4-5^6-,0	complex events
SL3.0ch00	CUFF.266.1	mRNA:Solyc00g104940.1.1	14967653	14968211	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	mRNA:Solyc01g065840.3.1	CUFF.1998.2	72243649	72244574	+	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.6638.1	mRNA:Solyc02g084315.1.1	48003041	48004523	+	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.6614.1	mRNA:Solyc02g084117.1.1	47872448	47873249	-	1^2-3^4-5^6-,0	complex events
SL3.0ch00	CUFF.384.1	mRNA:Solyc00g273110.2.1	19693870	19695342	-	1^2-3^4-5^6-,0	complex events
SL3.0ch00	CUFF.155.2	CUFF.155.4	11017530	11018305	-	1^2-3^4-5^6-,0	complex events
SL3.0ch00	CUFF.155.3	CUFF.155.4	11018225	11018470	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	mRNA:Solyc02g088940.3.1	CUFF.7045.4	51501588	51502156	+	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.7014.1	CUFF.7014.2	51128243	51130878	-	1^2-3^4-5^6-,0	complex events
SL3.0ch02	CUFF.6988.3	CUFF.6988.2	50937789	50939169	-	1^2-3^4-5^6-,0	complex events
SL3.0ch01	mRNA:Solyc01g008400.3.1	mRNA:Solyc01g008405.1.1	2419732	2420581	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch09	CUFF.23851.1	mRNA:Solyc09g010560.2.1	3920997	3925132	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch08	mRNA:Solyc08g042060.2.1	CUFF.21731.4	24001073	24003257	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch11	CUFF.28687.1	CUFF.28687.3	997030	997750	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	CUFF.19717.5	CUFF.19717.2	51091530	51092060	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	CUFF.19717.4	CUFF.19717.2	51091530	51092186	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	CUFF.19717.3	CUFF.19717.2	51091530	51092186	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	CUFF.20262.1	mRNA:Solyc07g052855.1.1	61424016	61425609	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	CUFF.20276.2	mRNA:Solyc07g053020.2.1	61566764	61569676	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	mRNA:Solyc07g053100.3.1	CUFF.20279.2	61688702	61689552	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch02	mRNA:Solyc02g077320.3.1	CUFF.6060.1	42858226	42859037	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch00	CUFF.78.1	mRNA:Solyc00g009030.2.1	7800884	7802082	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch02	CUFF.6236.1	mRNA:Solyc02g079390.3.1	44525234	44527124	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	mRNA:Solyc07g048085.1.1	mRNA:Solyc07g048090.2.1	59404155	59404533	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	CUFF.20062.1	mRNA:Solyc07g047820.2.1	59152596	59155685	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	mRNA:Solyc07g045120.2.1	mRNA:Solyc07g045105.1.1	58345228	58347152	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch06	CUFF.17297.1	mRNA:Solyc06g060535.1.1	38670869	38673766	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch06	CUFF.16100.3	CUFF.16100.6	2752957	2754393	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch06	CUFF.17427.2	mRNA:Solyc06g063015.1.1	39900017	39901290	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch06	CUFF.17629.3	CUFF.17629.2	42246168	42247923	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch06	CUFF.17677.1	mRNA:Solyc06g068630.3.1	42657470	42662462	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch06	CUFF.17821.1	mRNA:Solyc06g071620.3.1	44250066	44255151	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	CUFF.4007.2	mRNA:Solyc01g107270.3.1	94767892	94769859	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	mRNA:Solyc01g108070.3.1	mRNA:Solyc01g108083.1.1	95332627	95333423	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	mRNA:Solyc01g108210.3.1	CUFF.4090.3	95466801	95468486	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch11	CUFF.30363.1	mRNA:Solyc11g065135.1.1	50770815	50772252	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch03	CUFF.8411.1	mRNA:Solyc03g071533.1.1	20026053	20027233	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch05	mRNA:Solyc05g015433.1.1	CUFF.14163.3	10568467	10570169	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch09	mRNA:Solyc09g098420.2.1	CUFF.26076.2	72735298	72739533	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	CUFF.3094.2	mRNA:Solyc01g095990.3.1	86981789	86984771	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch02	CUFF.5515.3	mRNA:Solyc02g067275.1.1	38019693	38025871	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch10	CUFF.27892.1	mRNA:Solyc10g055770.2.1	57346877	57347561	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch02	CUFF.5165.3	mRNA:Solyc02g036310.3.1	30973693	30974539	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	CUFF.3497.2	mRNA:Solyc01g100960.3.1	90715286	90716246	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	CUFF.19275.4	CUFF.19275.3	24476714	24477788	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	CUFF.3738.2	mRNA:Solyc01g104432.1.1	92718051	92719914	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	mRNA:Solyc01g105775.1.1	CUFF.3891.3	93715464	93717334	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	CUFF.3915.2	mRNA:Solyc01g106177.1.1	94019689	94020368	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch03	CUFF.8944.1	mRNA:Solyc03g078210.3.1	51610532	51616188	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch06	CUFF.17184.1	mRNA:Solyc06g054290.2.1	37211913	37212353	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch10	CUFF.27331.3	mRNA:Solyc10g047540.2.1	41021284	41021640	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch12	CUFF.31327.2	mRNA:Solyc12g013865.1.1	4654492	4654923	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch03	CUFF.7739.3	mRNA:Solyc03g007280.3.1	1846898	1847329	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch03	CUFF.7739.1	mRNA:Solyc03g007280.3.1	1845149	1845877	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	mRNA:Solyc07g062040.3.1	mRNA:Solyc07g062045.1.1	65007069	65008103	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	CUFF.18472.1	mRNA:Solyc07g005230.2.1	207161	209682	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch08	mRNA:Solyc08g083290.3.1	CUFF.23446.2	65922407	65923913	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	CUFF.2537.2	mRNA:Solyc01g086895.1.1	81689476	81690572	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch12	CUFF.32509.1	mRNA:Solyc12g042230.2.1	58304451	58305089	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch11	mRNA:Solyc11g045480.2.1	CUFF.29870.2	30652362	30653197	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch04	CUFF.12348.1	mRNA:Solyc04g054290.2.1	52219467	52220341	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch07	mRNA:Solyc07g065445.1.1	CUFF.20822.6	67323138	67324364	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch11	CUFF.30108.1	mRNA:Solyc11g042523.1.1	36454198	36455025	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch11	CUFF.30188.2	CUFF.30188.1	40539315	40540162	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch09	CUFF.25571.1	mRNA:Solyc09g074940.2.1	67157393	67159872	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch05	CUFF.13903.1	mRNA:Solyc05g012257.1.1	5545972	5546539	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch05	CUFF.13873.1	mRNA:Solyc05g012045.1.1	5273711	5274884	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch05	CUFF.13619.1	mRNA:Solyc05g007740.2.1	2208663	2211117	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch09	mRNA:Solyc09g090810.2.1	CUFF.25846.2	70700813	70703232	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch03	CUFF.10694.1	mRNA:Solyc03g123800.2.1	72028450	72029732	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch03	CUFF.7901.3	mRNA:Solyc03g026250.2.1	3704722	3705613	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch03	mRNA:Solyc03g032050.3.1	mRNA:Solyc03g032055.1.1	4594730	4595582	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	CUFF.2860.1	mRNA:Solyc01g091140.3.1	84718932	84719727	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch01	CUFF.2626.2	CUFF.2626.1	82225025	82228171	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch03	CUFF.8285.1	mRNA:Solyc03g044673.1.1	10358645	10359630	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch09	CUFF.23505.2	CUFF.23505.1	353638	354423	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch04	mRNA:Solyc04g063300.2.1	CUFF.12530.2	55438352	55440830	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch11	mRNA:Solyc11g010330.2.1	CUFF.28946.2	3405780	3407433	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch11	CUFF.28962.1	mRNA:Solyc11g010625.1.1	3691341	3691915	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch05	CUFF.15821.1	mRNA:Solyc05g056420.3.1	66567300	66569671	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch04	CUFF.12786.1	CUFF.12786.5	59658326	59659343	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch09	CUFF.23809.1	mRNA:Solyc09g010095.1.1	3484820	3487598	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch04	mRNA:Solyc04g077480.3.1	mRNA:Solyc04g077485.1.1	62486003	62486930	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch05	CUFF.15728.1	mRNA:Solyc05g055380.2.1	65893942	65894348	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch04	CUFF.12962.1	mRNA:Solyc04g076720.2.1	61707552	61710120	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch05	mRNA:Solyc05g052630.3.1	CUFF.15533.2	63697541	63700387	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch11	CUFF.29310.2	CUFF.29310.1	8189324	8190247	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch11	CUFF.29310.1	mRNA:Solyc11g017320.2.1	8189720	8190317	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch06	CUFF.18209.1	mRNA:Solyc06g082040.2.1	48041104	48044088	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch09	CUFF.24665.2	CUFF.24665.1	34669504	34671176	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch06	mRNA:Solyc06g074050.2.1	CUFF.18010.2	45919334	45920133	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch10	CUFF.26250.1	CUFF.26250.2	1316291	1316816	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch06	CUFF.17873.1	mRNA:Solyc06g072410.2.1	44817590	44819474	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch09	CUFF.25255.1	mRNA:Solyc09g064610.3.1	62156539	62157656	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch00	mRNA:Solyc00g201160.3.1	CUFF.347.2	17910783	17911793	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch02	CUFF.6624.1	CUFF.6624.2	47916193	47918632	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch02	mRNA:Solyc02g088983.1.1	CUFF.7062.3	51541577	51543465	+	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch00	CUFF.155.2	CUFF.155.4	11018605	11019000	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch04	mRNA:Solyc04g080510.3.1	CUFF.13255.2	64753286	64754742	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch02	CUFF.7014.1	mRNA:Solyc02g088395.1.1	51128243	51131049	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch02	mRNA:Solyc02g086970.3.1	CUFF.6900.1	50175954	50177452	-	1^2-3^4-5^6-7^8-,0	complex events
SL3.0ch05	mRNA:Solyc05g042182.1.1	CUFF.15114.3	56281254	56281322	+	1-2^,0	exon skipping
SL3.0ch07	mRNA:Solyc07g039525.1.1	mRNA:Solyc07g039530.1.1	47777771	47777836	-	1-2^,0	exon skipping
SL3.0ch02	mRNA:Solyc02g080940.3.1	mRNA:Solyc02g080950.2.1	45586886	45586903	+	1-2^,0	exon skipping
SL3.0ch09	mRNA:Solyc09g042300.2.1	mRNA:Solyc09g042305.1.1	22993077	22993107	-	1-2^,0	exon skipping
SL3.0ch09	mRNA:Solyc09g018920.2.1	mRNA:Solyc09g018905.1.1	17741071	17741275	+	1-2^,0	exon skipping
SL3.0ch06	mRNA:Solyc06g034063.1.1	mRNA:Solyc06g034070.2.1	23665423	23665470	-	1-2^,0	exon skipping
SL3.0ch06	mRNA:Solyc06g034063.1.1	mRNA:Solyc06g034070.2.1	23664843	23664890	-	1-2^,0	exon skipping
SL3.0ch01	CUFF.4371.2	mRNA:Solyc01g111933.1.1	98000998	98001264	+	1-2^,0	exon skipping
SL3.0ch07	mRNA:Solyc07g043687.1.1	mRNA:Solyc07g043690.2.1	57794014	57794070	+	1-2^,0	exon skipping
SL3.0ch11	mRNA:Solyc11g072320.2.1	mRNA:Solyc11g072330.2.1	55831432	55831480	+	1-2^,0	exon skipping
SL3.0ch06	CUFF.17767.2	mRNA:Solyc06g069665.1.1	43515688	43515723	+	1-2^,0	exon skipping
SL3.0ch06	CUFF.17767.2	mRNA:Solyc06g069665.1.1	43516398	43516556	+	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g097710.3.1	mRNA:Solyc03g097715.1.1	61486416	61486471	+	1-2^,0	exon skipping
SL3.0ch01	CUFF.4046.1	mRNA:Solyc01g107937.1.1	95213791	95213961	+	1-2^,0	exon skipping
SL3.0ch11	mRNA:Solyc11g065557.1.1	mRNA:Solyc11g065560.1.1	51390817	51390843	+	1-2^,0	exon skipping
SL3.0ch05	CUFF.14245.2	mRNA:Solyc05g015940.2.1	13081151	13081281	-	1-2^,0	exon skipping
SL3.0ch05	CUFF.14283.2	CUFF.14283.3	15429729	15429797	+	1-2^,0	exon skipping
SL3.0ch09	mRNA:Solyc09g098370.3.1	mRNA:Solyc09g098360.3.1	72699070	72699207	+	1-2^,0	exon skipping
SL3.0ch01	CUFF.3164.2	CUFF.3164.3	87619437	87619486	-	1-2^,0	exon skipping
SL3.0ch02	CUFF.7430.2	mRNA:Solyc02g093193.1.1	54777584	54777712	+	1-2^,0	exon skipping
SL3.0ch02	CUFF.5488.1	mRNA:Solyc02g067000.2.1	37814665	37814728	-	1-2^,0	exon skipping
SL3.0ch10	mRNA:Solyc10g055610.2.1	mRNA:Solyc10g055617.1.1	56996805	56996914	+	1-2^,0	exon skipping
SL3.0ch07	mRNA:Solyc07g006850.2.1	mRNA:Solyc07g006870.3.1	1722716	1722909	+	1-2^,0	exon skipping
SL3.0ch07	CUFF.18725.3	mRNA:Solyc07g008090.3.1	2783085	2783138	-	1-2^,0	exon skipping
SL3.0ch02	CUFF.5402.1	mRNA:Solyc02g064590.2.1	36278507	36278551	+	1-2^,0	exon skipping
SL3.0ch02	CUFF.5402.1	mRNA:Solyc02g064590.2.1	36280451	36280519	+	1-2^,0	exon skipping
SL3.0ch07	mRNA:Solyc07g021640.2.1	mRNA:Solyc07g021650.2.1	20530795	20530981	+	1-2^,0	exon skipping
SL3.0ch07	mRNA:Solyc07g021415.1.1	mRNA:Solyc07g021430.1.1	17989969	17990046	-	1-2^,0	exon skipping
SL3.0ch01	mRNA:Solyc01g099440.3.1	mRNA:Solyc01g099450.3.1	89573285	89573337	+	1-2^,0	exon skipping
SL3.0ch02	CUFF.5289.2	mRNA:Solyc02g062110.3.1	34242295	34242417	-	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g058930.3.1	mRNA:Solyc03g058940.3.1	29077583	29077708	-	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g059127.1.1	mRNA:Solyc03g059140.3.1	30055567	30055638	+	1-2^,0	exon skipping
SL3.0ch01	mRNA:Solyc01g102460.3.1	mRNA:Solyc01g102450.3.1	91134011	91134456	-	1-2^,0	exon skipping
SL3.0ch08	mRNA:Solyc08g007470.2.1	mRNA:Solyc08g007475.1.1	2042804	2043007	+	1-2^,0	exon skipping
SL3.0ch01	mRNA:Solyc01g105820.3.1	mRNA:Solyc01g105827.1.1	93760248	93760314	+	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g081260.3.1	mRNA:Solyc03g081270.2.1	53588323	53588361	-	1-2^,0	exon skipping
SL3.0ch12	mRNA:Solyc12g010010.2.1	mRNA:Solyc12g010015.1.1	3143992	3144147	+	1-2^,0	exon skipping
SL3.0ch12	mRNA:Solyc12g014400.2.1	mRNA:Solyc12g014397.1.1	5306202	5306276	+	1-2^,0	exon skipping
SL3.0ch11	mRNA:Solyc11g044593.1.1	mRNA:Solyc11g044595.1.1	32660091	32660135	-	1-2^,0	exon skipping
SL3.0ch10	mRNA:Solyc10g008010.3.1	CUFF.26332.2	2176913	2177065	+	1-2^,0	exon skipping
SL3.0ch01	mRNA:Solyc01g073750.3.1	mRNA:Solyc01g073755.1.1	81031222	81031272	+	1-2^,0	exon skipping
SL3.0ch04	mRNA:Solyc04g054470.3.1	mRNA:Solyc04g054475.1.1	52508634	52508675	+	1-2^,0	exon skipping
SL3.0ch12	mRNA:Solyc12g088620.1.1	mRNA:Solyc12g088613.1.1	64878301	64878354	-	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g025410.3.1	mRNA:Solyc03g025370.3.1	2829912	2829990	-	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g007590.3.1	mRNA:Solyc03g007595.1.1	2140153	2140317	-	1-2^,0	exon skipping
SL3.0ch02	mRNA:Solyc02g005513.1.1	mRNA:Solyc02g005530.2.1	9546936	9546998	-	1-2^,0	exon skipping
SL3.0ch04	mRNA:Solyc04g015060.2.1	mRNA:Solyc04g015050.3.1	5252531	5252608	+	1-2^,0	exon skipping
SL3.0ch02	CUFF.4480.1	mRNA:Solyc02g050187.1.1	4148978	4149082	+	1-2^,0	exon skipping
SL3.0ch02	mRNA:Solyc02g021270.3.1	mRNA:Solyc02g021277.1.1	22887772	22887828	-	1-2^,0	exon skipping
SL3.0ch02	mRNA:Solyc02g030100.3.1	mRNA:Solyc02g030105.1.1	25622175	25622243	+	1-2^,0	exon skipping
SL3.0ch07	mRNA:Solyc07g063735.1.1	mRNA:Solyc07g063780.2.1	66265543	66265722	-	1-2^,0	exon skipping
SL3.0ch05	mRNA:Solyc05g012930.3.1	mRNA:Solyc05g012940.3.1	6051800	6051829	+	1-2^,0	exon skipping
SL3.0ch05	mRNA:Solyc05g013345.1.1	mRNA:Solyc05g013360.3.1	6444186	6444221	-	1-2^,0	exon skipping
SL3.0ch09	mRNA:Solyc09g090750.3.1	mRNA:Solyc09g090760.3.1	70664061	70664147	+	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g031750.2.1	mRNA:Solyc03g031755.1.1	4246375	4246414	+	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g031740.2.1	mRNA:Solyc03g031730.3.1	4213463	4213537	-	1-2^,0	exon skipping
SL3.0ch01	mRNA:Solyc01g090920.3.1	mRNA:Solyc01g090925.1.1	84491488	84491528	-	1-2^,0	exon skipping
SL3.0ch01	CUFF.2818.2	mRNA:Solyc01g090640.3.1	84166137	84166214	-	1-2^,0	exon skipping
SL3.0ch01	mRNA:Solyc01g088400.3.1	mRNA:Solyc01g088410.3.1	83089302	83089403	+	1-2^,0	exon skipping
SL3.0ch12	mRNA:Solyc12g100350.2.1	mRNA:Solyc12g100353.1.1	68105529	68105687	+	1-2^,0	exon skipping
SL3.0ch08	CUFF.22441.2	mRNA:Solyc08g065600.1.1	53809374	53809610	+	1-2^,0	exon skipping
SL3.0ch08	mRNA:Solyc08g065590.2.1	mRNA:Solyc08g065600.1.1	53810513	53810557	+	1-2^,0	exon skipping
SL3.0ch04	mRNA:Solyc04g058065.1.1	CUFF.12501.2	55124903	55124987	+	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g121010.3.1	CUFF.10541.2	70736100	70736207	+	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g121010.3.1	CUFF.10541.2	70739447	70739515	+	1-2^,0	exon skipping
SL3.0ch09	CUFF.23555.1	mRNA:Solyc09g007170.3.1	803065	803199	-	1-2^,0	exon skipping
SL3.0ch04	mRNA:Solyc04g007960.3.1	mRNA:Solyc04g007970.3.1	1630154	1630222	-	1-2^,0	exon skipping
SL3.0ch04	mRNA:Solyc04g007960.3.1	mRNA:Solyc04g007970.3.1	1626238	1626327	-	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g120000.3.1	mRNA:Solyc03g120010.3.1	69996050	69996156	-	1-2^,0	exon skipping
SL3.0ch08	CUFF.22628.2	mRNA:Solyc08g067730.2.1	56776267	56776323	-	1-2^,0	exon skipping
SL3.0ch01	mRNA:Solyc01g020520.3.1	CUFF.1325.3	31045316	31045381	+	1-2^,0	exon skipping
SL3.0ch04	mRNA:Solyc04g077615.1.1	mRNA:Solyc04g077650.3.1	62676924	62677010	+	1-2^,0	exon skipping
SL3.0ch04	mRNA:Solyc04g077615.1.1	mRNA:Solyc04g077660.3.1	62680442	62680555	+	1-2^,0	exon skipping
SL3.0ch04	mRNA:Solyc04g077615.1.1	mRNA:Solyc04g077660.3.1	62682087	62682167	+	1-2^,0	exon skipping
SL3.0ch04	mRNA:Solyc04g076530.3.1	mRNA:Solyc04g076527.1.1	61509107	61509220	+	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g115660.3.1	CUFF.10066.3	66785595	66785663	+	1-2^,0	exon skipping
SL3.0ch04	mRNA:Solyc04g078400.3.1	mRNA:Solyc04g078410.3.1	63231718	63231771	+	1-2^,0	exon skipping
SL3.0ch03	CUFF.10358.1	CUFF.10358.2	69207030	69207108	-	1-2^,0	exon skipping
SL3.0ch11	mRNA:Solyc11g013290.2.1	mRNA:Solyc11g013293.1.1	6204078	6204170	-	1-2^,0	exon skipping
SL3.0ch03	mRNA:Solyc03g116930.3.1	mRNA:Solyc03g116935.1.1	67696376	67696425	-	1-2^,0	exon skipping
SL3.0ch06	CUFF.18307.3	mRNA:Solyc06g083090.3.1	48699995	48700061	-	1-2^,0	exon skipping
SL3.0ch06	mRNA:Solyc06g074300.3.1	mRNA:Solyc06g074310.3.1	46063595	46064692	-	1-2^,0	exon skipping
SL3.0ch09	mRNA:Solyc09g056130.3.1	mRNA:Solyc09g056135.1.1	47372018	47372073	-	1-2^,0	exon skipping
SL3.0ch01	mRNA:Solyc01g067273.1.1	CUFF.2141.4	75490138	75490193	+	1-2^,0	exon skipping
SL3.0ch01	CUFF.2135.4	mRNA:Solyc01g067230.3.1	75446318	75446412	+	1-2^,0	exon skipping
SL3.0ch02	mRNA:Solyc02g088940.3.1	mRNA:Solyc02g088945.1.1	51503632	51503714	+	1-2^,0	exon skipping
SL3.0ch02	CUFF.7051.1	mRNA:Solyc02g088954.1.1	51513108	51513307	+	1-2^,0	exon skipping
SL3.0ch02	mRNA:Solyc02g088780.3.1	mRNA:Solyc02g088770.3.1	51373102	51373215	-	1-2^,0	exon skipping
SL3.0ch05	mRNA:Solyc05g045777.1.1	mRNA:Solyc05g045790.1.1	58430207	58430278	+	1^4-,2^3-	complex events
SL3.0ch09	mRNA:Solyc09g011570.3.1	mRNA:Solyc09g011580.2.1	4860000	4860568	+	1^4-,2^3-	complex events
SL3.0ch01	mRNA:Solyc01g014143.1.1	mRNA:Solyc01g014150.1.1	11651524	11652270	+	1^4-,2^3-	complex events
SL3.0ch02	CUFF.6357.3	mRNA:Solyc02g081250.2.1	45846284	45848126	+	1^4-,2^3-	complex events
SL3.0ch11	mRNA:Solyc11g005710.2.1	mRNA:Solyc11g005715.1.1	564935	565829	+	1^4-,2^3-	complex events
SL3.0ch07	mRNA:Solyc07g052453.1.1	mRNA:Solyc07g052470.3.1	61093201	61093564	+	1^4-,2^3-	complex events
SL3.0ch03	mRNA:Solyc03g097590.3.1	CUFF.9494.2	61360787	61360955	-	1^4-,2^3-	complex events
SL3.0ch03	mRNA:Solyc03g097690.3.1	mRNA:Solyc03g097695.1.1	61448497	61448659	-	1^4-,2^3-	complex events
SL3.0ch06	CUFF.17412.1	mRNA:Solyc06g062890.3.1	39812157	39814796	+	1^4-,2^3-	complex events
SL3.0ch02	CUFF.7175.3	CUFF.7175.4	52678399	52679690	+	1^4-,2^3-	complex events
SL3.0ch01	CUFF.3177.2	mRNA:Solyc01g096960.3.1	87832441	87836619	-	1^4-,2^3-	complex events
SL3.0ch02	mRNA:Solyc02g068990.3.1	mRNA:Solyc02g068995.1.1	39515691	39515850	-	1^4-,2^3-	complex events
SL3.0ch10	mRNA:Solyc10g055610.2.1	mRNA:Solyc10g055613.1.1	56991115	56991415	+	1^4-,2^3-	complex events
SL3.0ch02	CUFF.5515.1	mRNA:Solyc02g067260.2.1	38017683	38018984	-	1^4-,2^3-	complex events
SL3.0ch02	mRNA:Solyc02g065350.3.1	mRNA:Solyc02g065360.3.1	37119429	37119730	+	1^4-,2^3-	complex events
SL3.0ch10	mRNA:Solyc10g079130.2.1	mRNA:Solyc10g079135.1.1	60868468	60868746	-	1^4-,2^3-	complex events
SL3.0ch03	mRNA:Solyc03g059150.3.1	mRNA:Solyc03g059160.2.1	30059044	30059218	+	1^4-,2^3-	complex events
SL3.0ch01	mRNA:Solyc01g106250.3.1	mRNA:Solyc01g106230.3.1	94084850	94085459	-	1^4-,2^3-	complex events
SL3.0ch06	mRNA:Solyc06g050650.1.1	mRNA:Solyc06g050645.1.1	33471102	33471353	+	1^4-,2^3-	complex events
SL3.0ch03	mRNA:Solyc03g078535.1.1	mRNA:Solyc03g078540.1.1	52559698	52560037	+	1^4-,2^3-	complex events
SL3.0ch06	CUFF.16736.2	CUFF.16736.1	28974272	28974859	+	1^4-,2^3-	complex events
SL3.0ch01	CUFF.3302.2	mRNA:Solyc01g098610.3.1	88951613	88953447	-	1^4-,2^3-	complex events
SL3.0ch07	CUFF.18472.3	mRNA:Solyc07g005215.1.1	207102	207548	-	1^4-,2^3-	complex events
SL3.0ch01	mRNA:Solyc01g081177.1.1	mRNA:Solyc01g081190.3.1	80338895	80339281	+	1^4-,2^3-	complex events
SL3.0ch11	CUFF.29818.3	CUFF.29818.1	25155042	25156336	-	1^4-,2^3-	complex events
SL3.0ch04	mRNA:Solyc04g055203.1.1	mRNA:Solyc04g055240.1.1	53807969	53808721	+	1^4-,2^3-	complex events
SL3.0ch05	CUFF.13564.1	mRNA:Solyc05g006703.1.1	1370624	1370825	+	1^4-,2^3-	complex events
SL3.0ch07	CUFF.20747.2	mRNA:Solyc07g064380.3.1	66693503	66694741	-	1^4-,2^3-	complex events
SL3.0ch09	CUFF.25354.1	mRNA:Solyc09g065493.1.1	63847687	63848172	-	1^4-,2^3-	complex events
SL3.0ch08	CUFF.23020.1	mRNA:Solyc08g077335.1.1	61352952	61355694	+	1^4-,2^3-	complex events
SL3.0ch01	CUFF.2983.2	mRNA:Solyc01g094620.3.1	85924270	85924576	-	1^4-,2^3-	complex events
SL3.0ch12	mRNA:Solyc12g038045.1.1	mRNA:Solyc12g038070.1.1	49480935	49481013	+	1^4-,2^3-	complex events
SL3.0ch01	mRNA:Solyc01g094237.1.1	mRNA:Solyc01g094250.3.1	85671077	85671196	+	1^4-,2^3-	complex events
SL3.0ch01	mRNA:Solyc01g088327.1.1	mRNA:Solyc01g088340.2.1	82994834	82995264	-	1^4-,2^3-	complex events
SL3.0ch10	CUFF.26650.1	mRNA:Solyc10g018420.2.1	7776076	7776327	-	1^4-,2^3-	complex events
SL3.0ch04	mRNA:Solyc04g064800.3.1	mRNA:Solyc04g064795.1.1	55964048	55964494	-	1^4-,2^3-	complex events
SL3.0ch01	mRNA:Solyc01g057360.1.1	mRNA:Solyc01g057355.1.1	60762569	60762754	-	1^4-,2^3-	complex events
SL3.0ch04	mRNA:Solyc04g071140.3.1	CUFF.12632.2	58162651	58163187	+	1^4-,2^3-	complex events
SL3.0ch05	CUFF.15654.2	mRNA:Solyc05g054300.2.1	65090734	65091577	+	1^4-,2^3-	complex events
SL3.0ch11	mRNA:Solyc11g050822.1.1	mRNA:Solyc11g050850.1.1	16526849	16527212	+	1^4-,2^3-	complex events
SL3.0ch11	mRNA:Solyc11g050826.1.1	mRNA:Solyc11g050880.2.1	16708357	16708466	+	1^4-,2^3-	complex events
SL3.0ch12	CUFF.32998.2	mRNA:Solyc12g094585.1.1	65743090	65743495	-	1^4-,2^3-	complex events
SL3.0ch12	mRNA:Solyc12g096630.2.1	mRNA:Solyc12g096635.1.1	66447994	66448112	+	1^4-,2^3-	complex events
SL3.0ch08	mRNA:Solyc08g061730.2.1	mRNA:Solyc08g061698.1.1	49513510	49513912	+	1^4-,2^3-	complex events
SL3.0ch03	mRNA:Solyc03g118175.1.1	mRNA:Solyc03g118180.3.1	68605733	68606126	+	1^4-,2^3-	complex events
SL3.0ch11	mRNA:Solyc11g017090.2.1	mRNA:Solyc11g017077.1.1	7887065	7887316	-	1^4-,2^3-	complex events
SL3.0ch03	mRNA:Solyc03g117055.1.1	mRNA:Solyc03g117060.3.1	67803244	67804413	-	1^4-,2^3-	complex events
SL3.0ch06	CUFF.18299.1	mRNA:Solyc06g082910.3.1	48589966	48590752	+	1^4-,2^3-	complex events
SL3.0ch06	mRNA:Solyc06g082895.1.1	mRNA:Solyc06g082900.3.1	48576200	48577406	+	1^4-,2^3-	complex events
SL3.0ch06	mRNA:Solyc06g075500.3.1	mRNA:Solyc06g075510.3.1	47003363	47003944	-	1^4-,2^3-	complex events
SL3.0ch06	mRNA:Solyc06g075520.3.1	mRNA:Solyc06g075513.1.1	47038899	47039967	+	1^4-,2^3-	complex events
SL3.0ch10	mRNA:Solyc10g007360.3.1	CUFF.26295.3	1743465	1743648	-	1^4-,2^3-	complex events
SL3.0ch09	mRNA:Solyc09g059345.1.1	mRNA:Solyc09g059400.3.1	54619897	54620602	+	1^4-,2^3-	complex events
SL3.0ch02	mRNA:Solyc02g086540.2.1	mRNA:Solyc02g086550.3.1	49853160	49853570	-	1^4-,2^3-	complex events
SL3.0ch02	CUFF.6844.1	mRNA:Solyc02g086440.3.1	49747601	49748034	+	1^4-,2^3-	complex events
SL3.0ch09	mRNA:Solyc09g061650.1.1	mRNA:Solyc09g061635.1.1	60376736	60377075	-	1^4-,2^3-	complex events
SL3.0ch09	mRNA:Solyc09g061685.1.1	mRNA:Solyc09g061690.1.1	60422940	60423234	-	1^4-,2^3-	complex events
SL3.0ch01	mRNA:Solyc01g066795.1.1	mRNA:Solyc01g066800.1.1	74799913	74800067	-	1^4-,2^3-	complex events
SL3.0ch00	mRNA:Solyc00g188855.1.1	mRNA:Solyc00g195360.1.1	17754280	17754511	+	1^4-,2^3-	complex events
SL3.0ch02	CUFF.7045.2	mRNA:Solyc02g088945.1.1	51502382	51502592	+	1^4-,2^3-	complex events
SL3.0ch02	CUFF.7051.1	mRNA:Solyc02g088954.1.1	51513409	51514235	+	1^4-,2^3-	complex events
SL3.0ch06	mRNA:Solyc06g083950.2.1	mRNA:Solyc06g083937.1.1	49280092	49280432	-	1^4-,2^3-	complex events
SL3.0ch00	mRNA:Solyc00g084650.2.1	mRNA:Solyc00g084750.3.1	14209809	14210367	-	1^4-,2^3-	complex events
SL3.0ch06	mRNA:Solyc06g083470.3.1	mRNA:Solyc06g083480.3.1	48924608	48925427	-	1^4-,2^3-	complex events
SL3.0ch01	CUFF.629.1	mRNA:Solyc01g008400.3.1	2420514	2420803	+	1^2-,3^4-	complex events
SL3.0ch09	CUFF.24142.1	CUFF.24142.2	11276356	11277099	-	1^2-,3^4-	complex events
SL3.0ch09	CUFF.23900.1	CUFF.23900.3	4686372	4686685	+	1^2-,3^4-	complex events
SL3.0ch10	CUFF.28400.1	CUFF.28400.2	63841025	63845569	+	1^2-,3^4-	complex events
SL3.0ch07	CUFF.19717.5	CUFF.19717.4	51092010	51092186	-	1^2-,3^4-	complex events
SL3.0ch08	CUFF.21515.2	CUFF.21515.3	10906522	10907618	+	1^2-,3^4-	complex events
SL3.0ch09	CUFF.24346.2	CUFF.24346.1	18320166	18321170	-	1^2-,3^4-	complex events
SL3.0ch00	mRNA:Solyc00g008080.1.1	mRNA:Solyc00g008090.2.1	7082968	7083073	-	1^2-,3^4-	complex events
SL3.0ch03	CUFF.9485.3	CUFF.9485.2	61225756	61226183	-	1^2-,3^4-	complex events
SL3.0ch06	CUFF.17412.2	CUFF.17412.1	39812147	39813457	+	1^2-,3^4-	complex events
SL3.0ch11	CUFF.30854.2	CUFF.30854.1	56480642	56481825	+	1^2-,3^4-	complex events
SL3.0ch06	CUFF.17645.1	mRNA:Solyc06g068210.2.1	42369015	42369165	-	1^2-,3^4-	complex events
SL3.0ch06	CUFF.17586.1	CUFF.17586.2	41839531	41839832	-	1^2-,3^4-	complex events
SL3.0ch05	mRNA:Solyc05g051994.1.1	mRNA:Solyc05g052010.2.1	63193200	63193953	+	1^2-,3^4-	complex events
SL3.0ch03	CUFF.9669.1	mRNA:Solyc03g111430.2.1	63507536	63507992	-	1^2-,3^4-	complex events
SL3.0ch01	CUFF.4007.1	CUFF.4007.2	94767048	94768722	-	1^2-,3^4-	complex events
SL3.0ch03	CUFF.8426.3	CUFF.8426.4	20417826	20418288	+	1^2-,3^4-	complex events
SL3.0ch08	CUFF.20973.1	CUFF.20973.2	428713	430565	+	1^2-,3^4-	complex events
SL3.0ch10	CUFF.27892.3	CUFF.27892.5	57346877	57347159	+	1^2-,3^4-	complex events
SL3.0ch07	CUFF.19275.2	CUFF.19275.3	24476925	24477241	+	1^2-,3^4-	complex events
SL3.0ch12	CUFF.31413.1	CUFF.31413.3	5671710	5672078	+	1^2-,3^4-	complex events
SL3.0ch06	mRNA:Solyc06g053675.1.1	mRNA:Solyc06g053690.2.1	36632894	36633099	-	1^2-,3^4-	complex events
SL3.0ch03	CUFF.8857.2	CUFF.8857.1	45955292	45955527	-	1^2-,3^4-	complex events
SL3.0ch03	CUFF.7739.2	CUFF.7739.1	1845149	1845995	+	1^2-,3^4-	complex events
SL3.0ch10	CUFF.26449.3	CUFF.26449.2	3403307	3403878	-	1^2-,3^4-	complex events
SL3.0ch11	CUFF.30085.2	CUFF.30085.1	34310537	34310831	-	1^2-,3^4-	complex events
SL3.0ch11	CUFF.30038.2	CUFF.30038.4	33177109	33177380	-	1^2-,3^4-	complex events
SL3.0ch11	CUFF.29818.3	CUFF.29818.2	25155042	25155562	-	1^2-,3^4-	complex events
SL3.0ch04	CUFF.11489.1	CUFF.11489.4	12538830	12539126	+	1^2-,3^4-	complex events
SL3.0ch04	CUFF.12218.2	CUFF.12218.1	49262726	49265248	-	1^2-,3^4-	complex events
SL3.0ch05	mRNA:Solyc05g006010.3.1	mRNA:Solyc05g005990.3.1	734606	735340	-	1^2-,3^4-	complex events
SL3.0ch04	CUFF.12263.2	CUFF.12263.1	50231910	50232683	+	1^2-,3^4-	complex events
SL3.0ch07	CUFF.20743.1	CUFF.20743.2	66649595	66649894	-	1^2-,3^4-	complex events
SL3.0ch07	CUFF.20743.3	CUFF.20743.2	66649537	66649839	-	1^2-,3^4-	complex events
SL3.0ch11	CUFF.30108.2	CUFF.30108.3	36454198	36454539	-	1^2-,3^4-	complex events
SL3.0ch08	CUFF.23020.1	mRNA:Solyc08g077340.2.1	61352373	61353599	+	1^2-,3^4-	complex events
SL3.0ch05	CUFF.13861.3	CUFF.13861.4	5075344	5075744	+	1^2-,3^4-	complex events
SL3.0ch05	CUFF.14059.2	CUFF.14059.1	7797891	7799996	+	1^2-,3^4-	complex events
SL3.0ch05	CUFF.13681.2	CUFF.13681.3	2798127	2798517	+	1^2-,3^4-	complex events
SL3.0ch07	CUFF.20458.2	CUFF.20458.1	63570656	63571099	-	1^2-,3^4-	complex events
SL3.0ch09	CUFF.25752.3	CUFF.25752.4	69410599	69410924	-	1^2-,3^4-	complex events
SL3.0ch09	CUFF.25752.3	CUFF.25752.2	69410401	69410756	-	1^2-,3^4-	complex events
SL3.0ch12	CUFF.32235.3	CUFF.32235.4	48398969	48399427	+	1^2-,3^4-	complex events
SL3.0ch01	CUFF.1684.1	CUFF.1684.2	60498682	60499620	-	1^2-,3^4-	complex events
SL3.0ch11	CUFF.28962.1	CUFF.28962.2	3691284	3691767	+	1^2-,3^4-	complex events
SL3.0ch05	mRNA:Solyc05g056320.3.1	CUFF.15818.2	66506261	66506999	-	1^2-,3^4-	complex events
SL3.0ch08	CUFF.22828.2	CUFF.22828.3	59157594	59160070	+	1^2-,3^4-	complex events
SL3.0ch05	CUFF.15654.2	CUFF.15654.1	65091087	65091660	+	1^2-,3^4-	complex events
SL3.0ch03	CUFF.10235.1	CUFF.10235.2	68252189	68253739	-	1^2-,3^4-	complex events
SL3.0ch09	CUFF.24873.2	CUFF.24873.1	48761646	48763000	+	1^2-,3^4-	complex events
SL3.0ch10	mRNA:Solyc10g006200.3.1	CUFF.26190.8	897782	899097	-	1^2-,3^4-	complex events
SL3.0ch09	CUFF.24800.3	CUFF.24800.4	46294605	46295084	+	1^2-,3^4-	complex events
SL3.0ch02	CUFF.6496.4	CUFF.6496.3	46854045	46855491	+	1^2-,3^4-	complex events
SL3.0ch06	CUFF.17917.1	CUFF.17917.3	45103446	45103820	+	1^2-,3^4-	complex events
SL3.0ch02	CUFF.6871.1	CUFF.6871.2	49923265	49926044	-	1^2-,3^4-	complex events
SL3.0ch02	CUFF.7018.4	CUFF.7018.6	51177707	51178848	+	1^2-,3^4-	complex events
SL3.0ch09	mRNA:Solyc09g015830.2.1	mRNA:Solyc09g015840.3.1	11276988	11277426	-	1^3-,2^4-	complex events
SL3.0ch07	mRNA:Solyc07g052720.3.1	mRNA:Solyc07g052703.1.1	61292108	61292270	+	1^3-,2^4-	complex events
SL3.0ch06	mRNA:Solyc06g011495.1.1	mRNA:Solyc06g011500.2.1	7951033	7952308	-	1^3-,2^4-	complex events
SL3.0ch02	mRNA:Solyc02g071640.2.1	mRNA:Solyc02g071645.1.1	41596858	41597264	+	1^3-,2^4-	complex events
SL3.0ch06	mRNA:Solyc06g063130.3.1	mRNA:Solyc06g063140.3.1	39995869	39996462	+	1^3-,2^4-	complex events
SL3.0ch06	CUFF.17412.2	mRNA:Solyc06g062890.3.1	39812147	39814796	+	1^3-,2^4-	complex events
SL3.0ch05	mRNA:Solyc05g050740.3.1	CUFF.15375.2	61719680	61722023	+	1^3-,2^4-	complex events
SL3.0ch11	mRNA:Solyc11g065780.2.1	mRNA:Solyc11g065790.1.1	51679162	51679278	+	1^3-,2^4-	complex events
SL3.0ch03	mRNA:Solyc03g111060.3.1	mRNA:Solyc03g111055.1.1	63222196	63222383	+	1^3-,2^4-	complex events
SL3.0ch10	mRNA:Solyc10g050405.1.1	mRNA:Solyc10g050420.2.1	49604638	49605686	-	1^3-,2^4-	complex events
SL3.0ch05	mRNA:Solyc05g018125.1.1	mRNA:Solyc05g018130.3.1	20062477	20063028	+	1^3-,2^4-	complex events
SL3.0ch07	CUFF.18697.2	mRNA:Solyc07g007850.2.1	2526028	2530896	-	1^3-,2^4-	complex events
SL3.0ch07	CUFF.19272.1	mRNA:Solyc07g025090.1.1	24248304	24250465	-	1^3-,2^4-	complex events
SL3.0ch01	mRNA:Solyc01g105820.3.1	mRNA:Solyc01g105827.1.1	93759930	93760020	+	1^3-,2^4-	complex events
SL3.0ch06	mRNA:Solyc06g050180.2.1	mRNA:Solyc06g050200.2.1	32759372	32759467	+	1^3-,2^4-	complex events
SL3.0ch06	CUFF.16664.2	mRNA:Solyc06g036233.1.1	25804358	25804510	+	1^3-,2^4-	complex events
SL3.0ch05	CUFF.14769.1	mRNA:Solyc05g025905.1.1	37902906	37903188	+	1^3-,2^4-	complex events
SL3.0ch01	mRNA:Solyc01g099030.3.1	mRNA:Solyc01g099060.2.1	89274909	89274991	-	1^3-,2^4-	complex events
SL3.0ch06	mRNA:Solyc06g051980.3.1	mRNA:Solyc06g051970.3.1	35734092	35734257	-	1^3-,2^4-	complex events
SL3.0ch06	CUFF.17030.1	mRNA:Solyc06g084760.2.1	35667389	35668621	+	1^3-,2^4-	complex events
SL3.0ch08	mRNA:Solyc08g080590.3.1	mRNA:Solyc08g080585.1.1	63966044	63966629	+	1^3-,2^4-	complex events
SL3.0ch09	CUFF.25423.2	mRNA:Solyc09g066155.1.1	64832324	64832435	-	1^3-,2^4-	complex events
SL3.0ch08	mRNA:Solyc08g078120.1.1	CUFF.23074.6	62077944	62078086	-	1^3-,2^4-	complex events
SL3.0ch01	mRNA:Solyc01g094230.3.1	mRNA:Solyc01g094233.1.1	85662475	85663504	+	1^3-,2^4-	complex events
SL3.0ch12	CUFF.32251.2	mRNA:Solyc12g036915.1.1	49010585	49011030	+	1^3-,2^4-	complex events
SL3.0ch12	mRNA:Solyc12g100350.2.1	mRNA:Solyc12g100353.1.1	68103569	68103723	+	1^3-,2^4-	complex events
SL3.0ch09	mRNA:Solyc09g005523.1.1	mRNA:Solyc09g005530.3.1	349990	350110	+	1^3-,2^4-	complex events
SL3.0ch11	mRNA:Solyc11g011290.2.1	mRNA:Solyc11g011285.1.1	4334923	4335385	+	1^3-,2^4-	complex events
SL3.0ch04	CUFF.12697.2	mRNA:Solyc04g071730.3.1	58780387	58780665	+	1^3-,2^4-	complex events
SL3.0ch04	mRNA:Solyc04g077330.3.1	mRNA:Solyc04g077310.3.1	62353891	62354025	+	1^3-,2^4-	complex events
SL3.0ch08	CUFF.22873.1	mRNA:Solyc08g075420.3.1	59668654	59669399	-	1^3-,2^4-	complex events
SL3.0ch04	CUFF.12947.1	mRNA:Solyc04g076695.1.1	61673800	61677954	-	1^3-,2^4-	complex events
SL3.0ch05	CUFF.15654.1	mRNA:Solyc05g054300.2.1	65090734	65091660	+	1^3-,2^4-	complex events
SL3.0ch01	mRNA:Solyc01g059990.3.1	mRNA:Solyc01g059967.1.1	69331538	69331628	+	1^3-,2^4-	complex events
SL3.0ch01	mRNA:Solyc01g060245.1.1	mRNA:Solyc01g060250.2.1	69904943	69906973	+	1^3-,2^4-	complex events
SL3.0ch11	mRNA:Solyc11g013700.1.1	mRNA:Solyc11g013683.1.1	6984521	6984787	+	1^3-,2^4-	complex events
SL3.0ch10	CUFF.26190.1	CUFF.26190.5	900172	900578	-	1^3-,2^4-	complex events
SL3.0ch02	CUFF.6490.3	CUFF.6490.2	46818589	46820706	+	1^3-,2^4-	complex events
SL3.0ch02	mRNA:Solyc02g082557.1.1	mRNA:Solyc02g082560.1.1	46788395	46788552	-	1^3-,2^4-	complex events
SL3.0ch02	mRNA:Solyc02g085750.3.1	mRNA:Solyc02g085745.1.1	49186172	49186369	+	1^3-,2^4-	complex events
SL3.0ch00	mRNA:Solyc00g157080.2.1	mRNA:Solyc00g157083.1.1	16663439	16664602	+	1^3-,2^4-	complex events
SL3.0ch01	CUFF.2135.4	mRNA:Solyc01g067230.3.1	75445237	75445421	+	1^3-,2^4-	complex events
SL3.0ch04	mRNA:Solyc04g079030.2.1	mRNA:Solyc04g079025.1.1	63716207	63716282	+	1^3-,2^4-	complex events
SL3.0ch04	mRNA:Solyc04g079060.3.1	mRNA:Solyc04g079043.1.1	63728704	63729166	-	1^3-,2^4-	complex events
SL3.0ch08	mRNA:Solyc08g029150.2.1	CUFF.21990.2	38124563	38125087	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch08	mRNA:Solyc08g029150.2.1	CUFF.21990.3	38125240	38125754	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch07	mRNA:Solyc07g041490.2.1	CUFF.19784.2	53430250	53431209	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch11	CUFF.28687.1	CUFF.28687.4	997030	997750	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch07	mRNA:Solyc07g040880.3.1	CUFF.19717.2	51091530	51092186	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch00	CUFF.20.2	mRNA:Solyc00g005285.1.1	2355269	2356462	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch02	mRNA:Solyc02g077950.2.1	CUFF.6114.2	43338562	43340325	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch02	CUFF.5836.2	mRNA:Solyc02g070710.2.1	40934756	40935107	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch06	CUFF.16100.1	CUFF.16100.3	2752957	2754569	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch11	CUFF.30800.2	mRNA:Solyc11g072380.2.1	55853308	55855433	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch01	CUFF.4143.1	mRNA:Solyc01g108973.1.1	95995987	95996488	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch01	mRNA:Solyc01g109790.3.1	mRNA:Solyc01g109795.1.1	96549165	96550389	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch01	CUFF.4034.1	mRNA:Solyc01g107675.1.1	95038799	95039872	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch10	mRNA:Solyc10g051225.1.1	CUFF.27683.2	51724138	51724803	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch01	CUFF.3364.1	mRNA:Solyc01g099440.3.1	89571926	89574198	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch10	CUFF.28206.1	mRNA:Solyc10g080260.2.1	61720479	61722881	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch07	CUFF.19275.4	mRNA:Solyc07g025105.1.1	24476714	24477788	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch08	CUFF.21243.2	mRNA:Solyc08g008180.2.1	2640666	2641652	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch03	CUFF.8973.2	mRNA:Solyc03g078480.2.1	52418753	52419218	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch01	CUFF.3300.1	mRNA:Solyc01g098527.1.1	88899719	88902523	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch03	CUFF.7739.2	CUFF.7739.1	1847140	1847757	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch03	CUFF.7739.2	mRNA:Solyc03g007280.3.1	1845362	1846071	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch08	CUFF.23326.2	CUFF.23326.1	64846690	64847484	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch04	CUFF.11481.1	mRNA:Solyc04g039930.3.1	12380329	12380905	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch11	CUFF.30188.2	mRNA:Solyc11g039980.2.1	40538707	40539264	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch07	mRNA:Solyc07g054190.3.1	CUFF.20352.2	62679617	62681071	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch01	CUFF.2626.1	mRNA:Solyc01g087400.3.1	82225025	82228171	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch05	mRNA:Solyc05g056420.3.1	mRNA:Solyc05g056425.1.1	66567300	66569671	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch04	mRNA:Solyc04g074160.2.1	CUFF.12835.2	60235294	60237818	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch04	CUFF.12786.1	mRNA:Solyc04g072605.1.1	59658058	59659343	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch01	CUFF.1507.2	mRNA:Solyc01g049975.1.1	47693722	47694655	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch05	mRNA:Solyc05g055010.3.1	CUFF.15704.2	65634562	65635873	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch09	CUFF.24665.1	mRNA:Solyc09g048970.2.1	34669159	34671176	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch10	CUFF.26250.2	mRNA:Solyc10g006890.3.1	1316291	1316816	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch02	CUFF.6624.1	mRNA:Solyc02g084167.1.1	47916193	47918764	-	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch02	CUFF.7045.2	mRNA:Solyc02g088940.3.1	51501213	51502326	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch06	CUFF.18443.1	mRNA:Solyc06g084590.3.1	49709044	49710338	+	1^2-3^4-5^6-7^8-9^10-,0	complex events
SL3.0ch01	mRNA:Solyc01g011090.3.1	mRNA:Solyc01g011091.1.1	7553419	7554000	+	1-2^3-4^,0	complex events
SL3.0ch10	mRNA:Solyc10g084810.2.1	mRNA:Solyc10g084820.2.1	64343926	64344200	-	1-2^3-4^,0	complex events
SL3.0ch12	mRNA:Solyc12g005220.2.1	mRNA:Solyc12g005230.2.1	145236	145554	+	1-2^3-4^,0	complex events
SL3.0ch11	mRNA:Solyc11g072140.2.1	mRNA:Solyc11g072150.2.1	55682860	55683064	-	1-2^3-4^,0	complex events
SL3.0ch06	mRNA:Solyc06g068740.3.1	mRNA:Solyc06g068760.3.1	42733972	42734150	+	1-2^3-4^,0	complex events
SL3.0ch06	mRNA:Solyc06g071460.3.1	mRNA:Solyc06g071470.3.1	44108991	44109664	+	1-2^3-4^,0	complex events
SL3.0ch01	CUFF.3973.1	CUFF.3973.2	94538301	94538555	+	1-2^3-4^,0	complex events
SL3.0ch01	CUFF.3973.2	mRNA:Solyc01g106950.3.1	94538300	94538555	+	1-2^3-4^,0	complex events
SL3.0ch05	mRNA:Solyc05g018125.1.1	mRNA:Solyc05g018130.3.1	20060879	20061202	+	1-2^3-4^,0	complex events
SL3.0ch01	CUFF.3164.2	CUFF.3164.3	87620432	87620601	-	1-2^3-4^,0	complex events
SL3.0ch01	CUFF.3164.2	mRNA:Solyc01g096740.3.1	87616717	87617043	-	1-2^3-4^,0	complex events
SL3.0ch08	mRNA:Solyc08g005790.3.1	mRNA:Solyc08g005800.3.1	616345	616654	+	1-2^3-4^,0	complex events
SL3.0ch08	mRNA:Solyc08g005710.3.1	mRNA:Solyc08g005720.3.1	567123	567465	+	1-2^3-4^,0	complex events
SL3.0ch02	mRNA:Solyc02g069130.3.1	mRNA:Solyc02g069140.2.1	39654468	39655336	+	1-2^3-4^,0	complex events
SL3.0ch02	mRNA:Solyc02g068120.3.1	mRNA:Solyc02g068125.1.1	38730675	38730823	-	1-2^3-4^,0	complex events
SL3.0ch10	mRNA:Solyc10g080320.2.1	mRNA:Solyc10g080330.2.1	61741454	61742084	-	1-2^3-4^,0	complex events
SL3.0ch03	mRNA:Solyc03g082380.3.1	mRNA:Solyc03g082367.1.1	53747742	53748164	-	1-2^3-4^,0	complex events
SL3.0ch01	CUFF.2537.3	mRNA:Solyc01g086895.1.1	81689531	81689953	-	1-2^3-4^,0	complex events
SL3.0ch01	mRNA:Solyc01g068590.3.1	mRNA:Solyc01g068630.3.1	77647878	77648139	+	1-2^3-4^,0	complex events
SL3.0ch09	mRNA:Solyc09g066140.3.1	mRNA:Solyc09g066145.1.1	64781548	64781715	+	1-2^3-4^,0	complex events
SL3.0ch01	mRNA:Solyc01g094320.3.1	mRNA:Solyc01g094315.1.1	85716428	85716646	-	1-2^3-4^,0	complex events
SL3.0ch01	mRNA:Solyc01g088780.3.1	mRNA:Solyc01g088800.3.1	83398367	83399459	+	1-2^3-4^,0	complex events
SL3.0ch04	mRNA:Solyc04g077615.1.1	mRNA:Solyc04g077650.3.1	62677666	62677975	+	1-2^3-4^,0	complex events
SL3.0ch03	mRNA:Solyc03g115025.1.1	mRNA:Solyc03g115030.3.1	66365350	66365659	+	1-2^3-4^,0	complex events
SL3.0ch10	mRNA:Solyc10g005950.3.1	mRNA:Solyc10g005955.1.1	725534	725722	+	1-2^3-4^,0	complex events
SL3.0ch10	CUFF.26190.1	mRNA:Solyc10g006157.1.1	893922	894894	-	1-2^3-4^,0	complex events
SL3.0ch06	mRNA:Solyc06g073140.2.1	mRNA:Solyc06g073160.3.1	45201984	45202248	-	1-2^3-4^,0	complex events
SL3.0ch06	mRNA:Solyc06g072620.3.1	mRNA:Solyc06g072640.1.1	44940457	44940829	+	1-2^3-4^,0	complex events
SL3.0ch05	mRNA:Solyc05g005750.3.1	mRNA:Solyc05g005755.1.1	572734	574353	+	1-2^3-4^,0	complex events
SL3.0ch06	mRNA:Solyc06g083950.2.1	mRNA:Solyc06g083937.1.1	49279292	49279928	-	1-2^3-4^,0	complex events
SL3.0ch12	mRNA:Solyc12g008665.1.1	mRNA:Solyc12g008680.2.1	2059393	2059562	+	1^3-4^,2^	complex events
SL3.0ch01	mRNA:Solyc01g008080.3.1	mRNA:Solyc01g008090.3.1	2156408	2156526	-	1^3-4^,2^	complex events
SL3.0ch07	mRNA:Solyc07g052720.3.1	CUFF.20247.5	61304525	61304727	+	1^3-4^,2^	complex events
SL3.0ch00	mRNA:Solyc00g007560.2.1	mRNA:Solyc00g007555.1.1	6675600	6676624	+	1^3-4^,2^	complex events
SL3.0ch02	CUFF.6130.1	mRNA:Solyc02g078215.1.1	43534023	43535039	+	1^3-4^,2^	complex events
SL3.0ch02	CUFF.5733.2	mRNA:Solyc02g069515.1.1	39959517	39959887	+	1^3-4^,2^	complex events
SL3.0ch03	CUFF.9709.1	mRNA:Solyc03g111680.3.1	63806994	63807251	-	1^3-4^,2^	complex events
SL3.0ch12	mRNA:Solyc12g021310.2.1	mRNA:Solyc12g021313.1.1	15386058	15386899	-	1^3-4^,2^	complex events
SL3.0ch02	CUFF.7405.2	CUFF.7405.1	54612134	54612922	-	1^3-4^,2^	complex events
SL3.0ch10	mRNA:Solyc10g054305.1.1	mRNA:Solyc10g054320.2.1	55176944	55181707	-	1^3-4^,2^	complex events
SL3.0ch02	CUFF.5402.4	mRNA:Solyc02g064630.3.1	36292719	36295046	+	1^3-4^,2^	complex events
SL3.0ch01	mRNA:Solyc01g099640.3.1	mRNA:Solyc01g099645.1.1	89699199	89703163	-	1^3-4^,2^	complex events
SL3.0ch07	mRNA:Solyc07g024095.1.1	mRNA:Solyc07g025090.1.1	24248343	24250465	-	1^3-4^,2^	complex events
SL3.0ch01	mRNA:Solyc01g103295.1.1	CUFF.3618.3	91794914	91796749	+	1^3-4^,2^	complex events
SL3.0ch03	mRNA:Solyc03g083000.3.1	mRNA:Solyc03g083005.1.1	54273187	54273670	+	1^3-4^,2^	complex events
SL3.0ch06	mRNA:Solyc06g036240.2.1	mRNA:Solyc06g036236.1.1	25806605	25806755	+	1^3-4^,2^	complex events
SL3.0ch12	mRNA:Solyc12g013970.2.1	mRNA:Solyc12g013990.2.1	4822134	4822239	+	1^3-4^,2^	complex events
SL3.0ch04	mRNA:Solyc04g051380.1.1	mRNA:Solyc04g051374.1.1	50388818	50389331	-	1^3-4^,2^	complex events
SL3.0ch05	CUFF.13564.1	mRNA:Solyc05g006710.3.1	1370870	1373316	+	1^3-4^,2^	complex events
SL3.0ch05	mRNA:Solyc05g013345.1.1	mRNA:Solyc05g013360.3.1	6445176	6446180	-	1^3-4^,2^	complex events
SL3.0ch01	mRNA:Solyc01g087330.3.1	mRNA:Solyc01g087332.1.1	82161535	82161819	-	1^3-4^,2^	complex events
SL3.0ch04	mRNA:Solyc04g071715.1.1	mRNA:Solyc04g071730.3.1	58780387	58780567	+	1^3-4^,2^	complex events
SL3.0ch01	mRNA:Solyc01g020220.2.1	mRNA:Solyc01g020230.3.1	27854513	27854719	+	1^3-4^,2^	complex events
SL3.0ch04	mRNA:Solyc04g077330.3.1	mRNA:Solyc04g077380.2.1	62384292	62384463	+	1^3-4^,2^	complex events
SL3.0ch05	mRNA:Solyc05g052430.2.1	mRNA:Solyc05g052460.3.1	63525650	63530637	-	1^3-4^,2^	complex events
SL3.0ch01	CUFF.1944.2	mRNA:Solyc01g060455.1.1	70967109	70967832	-	1^3-4^,2^	complex events
SL3.0ch04	mRNA:Solyc04g079300.3.1	mRNA:Solyc04g079305.1.1	63896727	63896868	-	1^3-4^,2^	complex events
SL3.0ch04	mRNA:Solyc04g079047.1.1	mRNA:Solyc04g079070.3.1	63741696	63742264	-	1^3-4^,2^	complex events
SL3.0ch01	mRNA:Solyc01g016697.1.1	mRNA:Solyc01g016700.3.1	21322597	21322912	-	1^,2^3-4^	complex events
SL3.0ch03	mRNA:Solyc03g097560.3.1	mRNA:Solyc03g097580.3.1	61328124	61328526	-	1^,2^3-4^	complex events
SL3.0ch11	mRNA:Solyc11g067170.2.1	mRNA:Solyc11g067190.2.1	53239293	53239613	-	1^,2^3-4^	complex events
SL3.0ch02	mRNA:Solyc02g090500.3.1	CUFF.7175.3	52678399	52679605	+	1^,2^3-4^	complex events
SL3.0ch01	mRNA:Solyc01g097190.3.1	mRNA:Solyc01g097210.3.1	88015270	88016213	+	1^,2^3-4^	complex events
SL3.0ch01	CUFF.3164.2	CUFF.3164.3	87620033	87620242	-	1^,2^3-4^	complex events
SL3.0ch02	mRNA:Solyc02g062110.3.1	mRNA:Solyc02g062130.3.1	34248486	34248862	-	1^,2^3-4^	complex events
SL3.0ch06	mRNA:Solyc06g050650.1.1	mRNA:Solyc06g050645.1.1	33469645	33470316	+	1^,2^3-4^	complex events
SL3.0ch03	CUFF.9000.1	mRNA:Solyc03g078820.2.1	52954972	52955119	-	1^,2^3-4^	complex events
SL3.0ch04	mRNA:Solyc04g019315.1.1	CUFF.11458.3	11902413	11903534	+	1^,2^3-4^	complex events
SL3.0ch04	mRNA:Solyc04g014400.3.1	mRNA:Solyc04g014440.3.1	4675798	4676481	-	1^,2^3-4^	complex events
SL3.0ch07	CUFF.20747.2	mRNA:Solyc07g064373.1.1	66695211	66697332	-	1^,2^3-4^	complex events
SL3.0ch01	mRNA:Solyc01g094237.1.1	mRNA:Solyc01g094260.3.1	85680325	85681840	+	1^,2^3-4^	complex events
SL3.0ch10	mRNA:Solyc10g012253.1.1	mRNA:Solyc10g012260.1.1	4780876	4781394	+	1^,2^3-4^	complex events
SL3.0ch08	mRNA:Solyc08g065590.2.1	mRNA:Solyc08g065600.1.1	53809775	53810110	+	1^,2^3-4^	complex events
SL3.0ch03	mRNA:Solyc03g120580.3.1	mRNA:Solyc03g120600.3.1	70436877	70437779	-	1^,2^3-4^	complex events
SL3.0ch11	mRNA:Solyc11g011380.2.1	mRNA:Solyc11g011390.2.1	4458119	4458276	+	1^,2^3-4^	complex events
SL3.0ch01	mRNA:Solyc01g020220.2.1	mRNA:Solyc01g020230.3.1	27858583	27858665	+	1^,2^3-4^	complex events
SL3.0ch08	mRNA:Solyc08g068250.3.1	CUFF.22690.4	57424659	57425095	-	1^,2^3-4^	complex events
SL3.0ch06	CUFF.18307.3	mRNA:Solyc06g083090.3.1	48702791	48704108	-	1^,2^3-4^	complex events
SL3.0ch02	CUFF.6621.4	mRNA:Solyc02g084170.2.1	47905678	47906053	-	1^,2^3-4^	complex events
SL3.0ch07	CUFF.19848.1	mRNA:Solyc07g042330.2.1	55611175	55611601	+	1-2^3-,4-	complex events
SL3.0ch07	mRNA:Solyc07g053560.3.1	mRNA:Solyc07g053565.1.1	62106999	62107441	-	1-2^3-,4-	complex events
SL3.0ch01	mRNA:Solyc01g110735.1.1	mRNA:Solyc01g110770.2.1	97256200	97256395	-	1-2^3-,4-	complex events
SL3.0ch11	mRNA:Solyc11g072320.2.1	mRNA:Solyc11g072330.2.1	55839597	55840475	+	1-2^3-,4-	complex events
SL3.0ch06	mRNA:Solyc06g007850.3.1	mRNA:Solyc06g007855.1.1	1747047	1748375	-	1-2^3-,4-	complex events
SL3.0ch02	CUFF.5471.3	mRNA:Solyc02g065685.1.1	37419745	37420167	+	1-2^3-,4-	complex events
SL3.0ch01	mRNA:Solyc01g103250.3.1	mRNA:Solyc01g103245.1.1	91784170	91784620	+	1-2^3-,4-	complex events
SL3.0ch06	mRNA:Solyc06g043170.3.1	mRNA:Solyc06g043175.1.1	29726372	29726945	+	1-2^3-,4-	complex events
SL3.0ch05	mRNA:Solyc05g021110.2.1	mRNA:Solyc05g021105.1.1	26374309	26375096	-	1-2^3-,4-	complex events
SL3.0ch05	mRNA:Solyc05g021180.2.1	mRNA:Solyc05g021167.1.1	26617250	26618776	-	1-2^3-,4-	complex events
SL3.0ch06	mRNA:Solyc06g036240.2.1	CUFF.16664.9	25807450	25807794	+	1-2^3-,4-	complex events
SL3.0ch04	mRNA:Solyc04g050840.1.1	mRNA:Solyc04g050850.2.1	48661143	48661302	-	1-2^3-,4-	complex events
SL3.0ch04	mRNA:Solyc04g016010.3.1	mRNA:Solyc04g016015.1.1	6622364	6623274	+	1-2^3-,4-	complex events
SL3.0ch01	mRNA:Solyc01g094240.3.1	mRNA:Solyc01g094237.1.1	85666886	85667133	+	1-2^3-,4-	complex events
SL3.0ch10	mRNA:Solyc10g009530.3.1	CUFF.26477.4	3653431	3654967	+	1-2^3-,4-	complex events
SL3.0ch03	mRNA:Solyc03g121010.3.1	mRNA:Solyc03g121020.3.1	70739770	70740951	+	1-2^3-,4-	complex events
SL3.0ch03	CUFF.10529.3	mRNA:Solyc03g120820.3.1	70568214	70568643	-	1-2^3-,4-	complex events
SL3.0ch01	mRNA:Solyc01g017827.1.1	mRNA:Solyc01g017840.1.1	25675851	25675935	+	1-2^3-,4-	complex events
SL3.0ch11	mRNA:Solyc11g020180.2.1	mRNA:Solyc11g020160.2.1	10411030	10411860	+	1-2^3-,4-	complex events
SL3.0ch06	mRNA:Solyc06g072500.2.1	mRNA:Solyc06g072510.3.1	44855090	44855716	+	1-2^3-,4-	complex events
SL3.0ch04	mRNA:Solyc04g080810.3.1	mRNA:Solyc04g080820.2.1	64981396	64982123	-	1-2^3-,4-	complex events
SL3.0ch07	mRNA:Solyc07g042830.3.1	CUFF.19897.1	56472824	56479053	-	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch11	CUFF.28687.1	mRNA:Solyc11g006245.1.1	997030	997750	+	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch07	CUFF.19449.1	mRNA:Solyc07g032020.2.1	33702512	33706930	+	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch01	CUFF.4143.2	mRNA:Solyc01g108973.1.1	95996330	95997192	-	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch01	CUFF.3748.1	mRNA:Solyc01g104433.1.1	92739326	92742140	-	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch12	mRNA:Solyc12g043030.2.1	CUFF.32570.1	59655343	59656933	+	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch10	CUFF.26356.2	mRNA:Solyc10g008230.2.1	2329559	2332750	+	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch08	mRNA:Solyc08g078750.3.1	CUFF.23130.1	62604351	62605016	-	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch02	CUFF.4815.2	mRNA:Solyc02g020890.3.1	20766982	20769198	+	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch09	CUFF.25614.2	mRNA:Solyc09g075760.3.1	67809330	67812454	+	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch04	mRNA:Solyc04g057890.3.1	mRNA:Solyc04g057895.1.1	54949486	54951837	-	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch09	mRNA:Solyc09g005523.1.1	CUFF.23505.1	353638	354603	+	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch08	CUFF.22830.1	mRNA:Solyc08g074897.1.1	59173658	59175016	+	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch02	CUFF.6511.1	mRNA:Solyc02g082763.1.1	46977047	46978907	+	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch02	mRNA:Solyc02g086750.2.1	CUFF.6882.2	50004140	50007221	+	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch02	mRNA:Solyc02g085315.1.1	CUFF.6716.6	48883027	48884259	-	1^2-3^4-5^6-7^8-9^10-11^12-,0	complex events
SL3.0ch05	CUFF.15390.2	CUFF.15390.3	61845699	61847266	+	1-3^4-,2-	complex events
SL3.0ch01	CUFF.3359.2	CUFF.3359.3	89562156	89562461	+	1-3^4-,2-	complex events
SL3.0ch05	mRNA:Solyc05g018655.1.1	mRNA:Solyc05g018660.1.1	22787583	22787746	+	1-3^4-,2-	complex events
SL3.0ch06	CUFF.16664.6	CUFF.16664.12	25807450	25808255	+	1-3^4-,2-	complex events
SL3.0ch12	mRNA:Solyc12g009960.2.1	CUFF.31190.2	3117222	3118358	+	1-3^4-,2-	complex events
SL3.0ch03	mRNA:Solyc03g006080.3.1	CUFF.7646.2	763065	763404	+	1-3^4-,2-	complex events
SL3.0ch09	CUFF.25336.1	mRNA:Solyc09g065280.3.1	63582451	63583104	+	1-3^4-,2-	complex events
SL3.0ch04	CUFF.11148.1	mRNA:Solyc04g011490.3.1	3921536	3921613	+	1-3^4-,2-	complex events
SL3.0ch08	mRNA:Solyc08g077690.3.1	CUFF.23047.2	61720279	61722239	+	1-3^4-,2-	complex events
SL3.0ch04	mRNA:Solyc04g072440.3.1	CUFF.12764.2	59542291	59542940	+	1-3^4-,2-	complex events
SL3.0ch01	CUFF.1427.1	mRNA:Solyc01g028860.3.1	40994647	40995165	+	1-3^4-,2-	complex events
SL3.0ch04	mRNA:Solyc04g077330.3.1	mRNA:Solyc04g077360.3.1	62373064	62373302	+	1-3^4-,2-	complex events
SL3.0ch03	CUFF.10056.1	mRNA:Solyc03g115550.3.1	66706205	66706560	+	1-3^4-,2-	complex events
SL3.0ch02	CUFF.7045.2	mRNA:Solyc02g088940.3.1	51497423	51497622	+	1-3^4-,2-	complex events
SL3.0ch06	CUFF.18443.1	mRNA:Solyc06g084590.3.1	49710850	49710959	+	1-3^4-,2-	complex events
SL3.0ch12	mRNA:Solyc12g006990.2.1	CUFF.31020.2	1429231	1429819	-	1-2^4-,3-	complex events
SL3.0ch07	mRNA:Solyc07g053110.3.1	mRNA:Solyc07g053120.3.1	61692789	61693051	-	1-2^4-,3-	complex events
SL3.0ch05	CUFF.15390.3	mRNA:Solyc05g050810.3.1	61845699	61847266	+	1-2^4-,3-	complex events
SL3.0ch02	mRNA:Solyc02g091620.2.1	mRNA:Solyc02g091625.1.1	53509879	53510368	+	1-2^4-,3-	complex events
SL3.0ch02	CUFF.5402.1	CUFF.5402.4	36292202	36292390	+	1-2^4-,3-	complex events
SL3.0ch02	CUFF.5289.2	CUFF.5289.3	34237221	34240647	-	1-2^4-,3-	complex events
SL3.0ch06	mRNA:Solyc06g050200.2.1	mRNA:Solyc06g050185.1.1	32760258	32760409	+	1-2^4-,3-	complex events
SL3.0ch03	mRNA:Solyc03g062740.3.1	mRNA:Solyc03g062745.1.1	34275735	34283471	+	1-2^4-,3-	complex events
SL3.0ch12	mRNA:Solyc12g089140.2.1	mRNA:Solyc12g089147.1.1	65214933	65215256	-	1-2^4-,3-	complex events
SL3.0ch07	mRNA:Solyc07g062910.3.1	mRNA:Solyc07g062920.3.1	65677380	65677595	+	1-2^4-,3-	complex events
SL3.0ch01	mRNA:Solyc01g057170.3.1	mRNA:Solyc01g057175.1.1	59426244	59426480	+	1-2^4-,3-	complex events
SL3.0ch03	mRNA:Solyc03g117470.3.1	mRNA:Solyc03g117480.3.1	68104114	68104291	-	1-2^4-,3-	complex events
SL3.0ch01	mRNA:Solyc01g067273.1.1	mRNA:Solyc01g067275.1.1	75479655	75480261	+	1-2^4-,3-	complex events
SL3.0ch06	mRNA:Solyc06g071395.1.1	mRNA:Solyc06g071410.3.1	44070237	44070780	-	1-,2-3^4-	complex events
SL3.0ch02	mRNA:Solyc02g090040.2.1	mRNA:Solyc02g090047.1.1	52346883	52348517	+	1-,2-3^4-	complex events
SL3.0ch02	CUFF.5488.1	mRNA:Solyc02g067000.2.1	37812463	37813247	-	1-,2-3^4-	complex events
SL3.0ch02	mRNA:Solyc02g065690.3.1	mRNA:Solyc02g065685.1.1	37420842	37421389	+	1-,2-3^4-	complex events
SL3.0ch06	mRNA:Solyc06g035480.3.1	mRNA:Solyc06g035455.1.1	24453608	24453812	-	1-,2-3^4-	complex events
SL3.0ch03	mRNA:Solyc03g122150.3.1	mRNA:Solyc03g122155.1.1	71571956	71572121	+	1-,2-3^4-	complex events
SL3.0ch02	mRNA:Solyc02g055530.3.1	mRNA:Solyc02g055535.1.1	2260676	2261368	+	1-,2-3^4-	complex events
SL3.0ch08	mRNA:Solyc08g066365.1.1	mRNA:Solyc08g066370.2.1	55027596	55027918	+	1-,2-3^4-	complex events
SL3.0ch03	mRNA:Solyc03g119670.3.1	mRNA:Solyc03g119675.1.1	69719693	69720665	+	1-,2-3^4-	complex events
SL3.0ch04	mRNA:Solyc04g076525.1.1	mRNA:Solyc04g076530.3.1	61504446	61506454	+	1-,2-3^4-	complex events
SL3.0ch11	mRNA:Solyc11g013083.1.1	mRNA:Solyc11g013090.2.1	5938757	5940973	+	1-,2-3^4-	complex events
SL3.0ch10	CUFF.26190.1	mRNA:Solyc10g006190.3.1	900172	900731	-	1-,2-3^4-	complex events
SL3.0ch10	CUFF.26190.5	mRNA:Solyc10g006190.3.1	900208	900731	-	1-,2-3^4-	complex events
SL3.0ch06	CUFF.17734.2	CUFF.17734.3	43213167	43218877	+	1^2-,3^4-5^6-	complex events
SL3.0ch02	CUFF.7175.2	CUFF.7175.4	52678839	52679902	+	1^2-,3^4-5^6-	complex events
SL3.0ch02	CUFF.5417.1	CUFF.5417.2	36523346	36523795	+	1^2-,3^4-5^6-	complex events
SL3.0ch01	CUFF.3650.1	CUFF.3650.5	92059897	92060921	-	1^2-,3^4-5^6-	complex events
SL3.0ch01	CUFF.3882.1	CUFF.3882.2	93600324	93601245	-	1^2-,3^4-5^6-	complex events
SL3.0ch01	CUFF.2162.2	CUFF.2162.1	76193717	76194690	+	1^2-,3^4-5^6-	complex events
SL3.0ch05	CUFF.13625.2	CUFF.13625.1	2246848	2247890	-	1^2-,3^4-5^6-	complex events
SL3.0ch04	CUFF.12491.2	CUFF.12491.3	55086568	55087298	+	1^2-,3^4-5^6-	complex events
SL3.0ch04	CUFF.12805.2	CUFF.12805.1	59850308	59851119	-	1^2-,3^4-5^6-	complex events
SL3.0ch02	CUFF.6443.2	CUFF.6443.1	46433104	46434384	-	1^2-,3^4-5^6-	complex events
SL3.0ch09	CUFF.25266.1	CUFF.25266.3	62246721	62247871	+	1^2-,3^4-5^6-	complex events
SL3.0ch02	CUFF.6638.1	CUFF.6638.2	48005365	48007218	+	1^2-,3^4-5^6-	complex events
SL3.0ch05	mRNA:Solyc05g043200.1.1	mRNA:Solyc05g042184.1.1	56309047	56309190	-	1^2-4^,3^	complex events
SL3.0ch10	mRNA:Solyc10g086560.2.1	CUFF.28567.2	65474010	65474777	-	1^2-4^,3^	complex events
SL3.0ch02	mRNA:Solyc02g071365.1.1	mRNA:Solyc02g071430.3.1	41450811	41451039	-	1^2-4^,3^	complex events
SL3.0ch05	CUFF.14283.1	CUFF.14283.2	15428414	15429797	+	1^2-4^,3^	complex events
SL3.0ch01	CUFF.3825.1	mRNA:Solyc01g104935.1.1	93155586	93155780	-	1^2-4^,3^	complex events
SL3.0ch08	CUFF.21216.2	mRNA:Solyc08g008010.3.1	2503899	2504348	-	1^2-4^,3^	complex events
SL3.0ch04	CUFF.11512.1	mRNA:Solyc04g039650.3.1	13388343	13388443	-	1^2-4^,3^	complex events
SL3.0ch12	CUFF.32711.2	mRNA:Solyc12g049510.2.1	62094626	62096130	-	1^2-4^,3^	complex events
SL3.0ch04	CUFF.12167.1	mRNA:Solyc04g050470.3.1	47213331	47213478	-	1^2-4^,3^	complex events
SL3.0ch03	mRNA:Solyc03g044480.3.1	CUFF.8273.2	9366386	9366868	-	1^2-4^,3^	complex events
SL3.0ch10	CUFF.26190.1	CUFF.26190.5	902985	903132	-	1^2-4^,3^	complex events
SL3.0ch08	mRNA:Solyc08g029150.2.1	CUFF.21990.4	38124861	38125552	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch08	CUFF.21833.1	mRNA:Solyc08g023420.2.1	27999823	28001231	+	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch01	mRNA:Solyc01g112170.3.1	CUFF.4387.1	98150248	98154059	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch10	CUFF.27942.1	mRNA:Solyc10g074850.2.1	58627717	58628523	+	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch01	mRNA:Solyc01g101020.3.1	CUFF.3502.2	90765011	90768823	+	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch03	CUFF.9132.5	mRNA:Solyc03g083147.1.1	54411776	54413074	+	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch01	mRNA:Solyc01g098520.3.1	CUFF.3300.1	88893251	88895865	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch07	CUFF.18472.1	mRNA:Solyc07g005215.1.1	206792	209665	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch08	CUFF.23326.3	mRNA:Solyc08g081760.2.1	64845798	64847484	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch03	CUFF.10061.3	CUFF.10061.2	66725679	66727071	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch02	mRNA:Solyc02g088010.3.1	CUFF.6980.1	50877290	50881052	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-,0	complex events
SL3.0ch11	CUFF.28687.3	CUFF.28687.4	997212	997518	+	1^2-3^4-,5^6-	complex events
SL3.0ch08	CUFF.21573.1	CUFF.21573.3	13397079	13398430	+	1^2-3^4-,5^6-	complex events
SL3.0ch07	CUFF.19038.2	CUFF.19038.3	8929331	8930860	-	1^2-3^4-,5^6-	complex events
SL3.0ch06	CUFF.17092.1	CUFF.17092.2	36207169	36208812	-	1^2-3^4-,5^6-	complex events
SL3.0ch04	CUFF.11259.2	CUFF.11259.3	5179912	5180953	+	1^2-3^4-,5^6-	complex events
SL3.0ch03	CUFF.7930.2	CUFF.7930.4	4011431	4011889	+	1^2-3^4-,5^6-	complex events
SL3.0ch03	CUFF.8289.3	CUFF.8289.4	10482872	10484491	+	1^2-3^4-,5^6-	complex events
SL3.0ch04	CUFF.12569.3	CUFF.12569.4	55821786	55822687	-	1^2-3^4-,5^6-	complex events
SL3.0ch09	CUFF.24842.1	mRNA:Solyc09g056135.1.1	47370657	47373136	-	1^2-3^4-,5^6-	complex events
SL3.0ch02	CUFF.6633.2	CUFF.6633.3	47989892	47994540	+	1^2-3^4-,5^6-	complex events
SL3.0ch00	CUFF.155.2	CUFF.155.3	11017894	11018470	-	1^2-3^4-,5^6-	complex events
SL3.0ch06	mRNA:Solyc06g034063.1.1	mRNA:Solyc06g034070.2.1	23668760	23670326	-	1^5-,2^3-4^6-	complex events
SL3.0ch01	mRNA:Solyc01g097210.3.1	mRNA:Solyc01g097195.1.1	88025519	88025762	+	1^5-,2^3-4^6-	complex events
SL3.0ch01	mRNA:Solyc01g095907.1.1	mRNA:Solyc01g095910.1.1	86930342	86931231	-	1^5-,2^3-4^6-	complex events
SL3.0ch08	mRNA:Solyc08g015696.1.1	CUFF.21401.2	5522584	5524800	-	1^5-,2^3-4^6-	complex events
SL3.0ch07	mRNA:Solyc07g021415.1.1	mRNA:Solyc07g021430.1.1	17990231	17990972	-	1^5-,2^3-4^6-	complex events
SL3.0ch03	mRNA:Solyc03g082700.3.1	mRNA:Solyc03g082710.3.1	54051764	54052346	-	1^5-,2^3-4^6-	complex events
SL3.0ch04	mRNA:Solyc04g081760.3.1	mRNA:Solyc04g081755.1.1	65772160	65773602	+	1^5-,2^3-4^6-	complex events
SL3.0ch01	CUFF.2818.2	mRNA:Solyc01g090645.1.1	84164477	84165113	-	1^5-,2^3-4^6-	complex events
SL3.0ch05	mRNA:Solyc05g054295.1.1	mRNA:Solyc05g054300.2.1	65090734	65091660	+	1^5-,2^3-4^6-	complex events
SL3.0ch10	mRNA:Solyc10g006157.1.1	CUFF.26190.5	900172	900578	-	1^5-,2^3-4^6-	complex events
SL3.0ch06	mRNA:Solyc06g009385.1.1	mRNA:Solyc06g009390.3.1	3310410	3310689	-	1^3-4^6-,2^5-	complex events
SL3.0ch01	CUFF.3221.1	mRNA:Solyc01g097425.1.1	88152529	88153227	+	1^3-4^6-,2^5-	complex events
SL3.0ch10	mRNA:Solyc10g076500.2.1	mRNA:Solyc10g076490.1.1	59575696	59576286	-	1^3-4^6-,2^5-	complex events
SL3.0ch03	mRNA:Solyc03g025410.3.1	mRNA:Solyc03g025370.3.1	2828195	2829215	-	1^3-4^6-,2^5-	complex events
SL3.0ch02	mRNA:Solyc02g030510.1.1	mRNA:Solyc02g030505.1.1	26763875	26764343	+	1^3-4^6-,2^5-	complex events
SL3.0ch08	mRNA:Solyc08g061710.2.1	mRNA:Solyc08g061692.1.1	49498948	49499649	+	1^3-4^6-,2^5-	complex events
SL3.0ch09	CUFF.25029.1	mRNA:Solyc09g059285.1.1	54400159	54400776	+	1^3-4^6-,2^5-	complex events
SL3.0ch02	CUFF.6621.4	mRNA:Solyc02g084170.2.1	47903748	47904376	-	1^3-4^6-,2^5-	complex events
SL3.0ch05	CUFF.15262.2	CUFF.15262.3	59325220	59327650	+	1^2-,3^4-5^6-7^8-	complex events
SL3.0ch08	CUFF.21065.1	mRNA:Solyc08g006470.3.1	1067809	1069710	+	1^2-,3^4-5^6-7^8-	complex events
SL3.0ch06	CUFF.17210.2	CUFF.17210.3	37340773	37341227	+	1^2-,3^4-5^6-7^8-	complex events
SL3.0ch10	CUFF.27181.1	CUFF.27181.2	31827306	31827790	+	1^2-,3^4-5^6-7^8-	complex events
SL3.0ch03	CUFF.7705.2	CUFF.7705.3	1291544	1293427	+	1^2-,3^4-5^6-7^8-	complex events
SL3.0ch08	mRNA:Solyc08g081840.3.1	CUFF.23331.2	64911441	64914581	+	1^2-,3^4-5^6-7^8-	complex events
SL3.0ch05	mRNA:Solyc05g050805.1.1	mRNA:Solyc05g050810.3.1	61845699	61847086	+	1-2^,3-4^	complex events
SL3.0ch02	mRNA:Solyc02g069080.3.1	CUFF.5696.3	39624151	39624223	-	1-2^,3-4^	complex events
SL3.0ch01	mRNA:Solyc01g099500.1.1	mRNA:Solyc01g099487.1.1	89610079	89610692	+	1-2^,3-4^	complex events
SL3.0ch08	mRNA:Solyc08g006910.3.1	mRNA:Solyc08g006917.1.1	1473955	1474143	+	1-2^,3-4^	complex events
SL3.0ch12	mRNA:Solyc12g014400.2.1	mRNA:Solyc12g014397.1.1	5309012	5309396	+	1-2^,3-4^	complex events
SL3.0ch04	mRNA:Solyc04g076610.2.1	mRNA:Solyc04g076620.3.1	61585650	61586845	-	1-2^,3-4^	complex events
SL3.0ch02	mRNA:Solyc02g091530.3.1	mRNA:Solyc02g091525.1.1	53439138	53439249	+	1^2-3^,4^	complex events
SL3.0ch11	CUFF.30038.2	CUFF.30038.1	33177198	33177380	-	1^2-3^,4^	complex events
SL3.0ch05	mRNA:Solyc05g012190.3.1	mRNA:Solyc05g012205.1.1	5462860	5464025	-	1^2-3^,4^	complex events
SL3.0ch09	mRNA:Solyc09g008290.3.1	mRNA:Solyc09g008295.1.1	1750203	1750664	-	1^2-3^,4^	complex events
SL3.0ch05	CUFF.15730.3	CUFF.15730.4	65932980	65933439	-	1^2-3^,4^	complex events
SL3.0ch04	CUFF.13240.2	mRNA:Solyc04g080285.1.1	64600743	64600918	+	1^2-3^,4^	complex events
SL3.0ch09	CUFF.24142.2	mRNA:Solyc09g015830.2.1	11276356	11277426	-	1^3-5^6-,2^4-	complex events
SL3.0ch09	mRNA:Solyc09g037125.1.1	mRNA:Solyc09g037130.2.1	21127305	21127505	+	1^3-5^6-,2^4-	complex events
SL3.0ch07	CUFF.20247.2	mRNA:Solyc07g052703.1.1	61292108	61292830	+	1^3-5^6-,2^4-	complex events
SL3.0ch03	mRNA:Solyc03g113610.3.1	mRNA:Solyc03g113615.1.1	65162090	65163396	-	1^3-5^6-,2^4-	complex events
SL3.0ch08	mRNA:Solyc08g075410.3.1	mRNA:Solyc08g075420.3.1	59667772	59669399	-	1^3-5^6-,2^4-	complex events
SL3.0ch06	CUFF.17767.2	mRNA:Solyc06g069665.1.1	43507616	43508069	+	1-2^3-4^5-6^,0	complex events
SL3.0ch10	CUFF.27774.1	mRNA:Solyc10g054280.2.1	55143236	55144284	-	1-2^3-4^5-6^,0	complex events
SL3.0ch04	mRNA:Solyc04g014870.3.1	mRNA:Solyc04g014875.1.1	5124070	5125191	+	1-2^3-4^5-6^,0	complex events
SL3.0ch03	mRNA:Solyc03g118175.1.1	mRNA:Solyc03g118180.3.1	68606269	68607354	+	1-2^3-4^5-6^,0	complex events
SL3.0ch12	mRNA:Solyc12g098420.2.1	CUFF.33123.4	66916161	66917677	+	1-2^3-4^5-6^,0	complex events
SL3.0ch05	CUFF.14283.1	CUFF.14283.3	15427236	15429729	+	1^4-5^6-,2^3-	complex events
SL3.0ch02	CUFF.5515.1	CUFF.5515.2	38016709	38018984	-	1^4-5^6-,2^3-	complex events
SL3.0ch01	mRNA:Solyc01g105820.3.1	mRNA:Solyc01g105823.1.1	93753300	93754994	+	1^4-5^6-,2^3-	complex events
SL3.0ch04	mRNA:Solyc04g050860.2.1	mRNA:Solyc04g050862.1.1	48696529	48697384	+	1^4-5^6-,2^3-	complex events
SL3.0ch02	CUFF.6642.1	mRNA:Solyc02g084350.3.1	48019299	48020492	-	1^4-5^6-,2^3-	complex events
SL3.0ch02	CUFF.7430.4	mRNA:Solyc02g093197.1.1	54784968	54786207	+	1^6-,2^3-4^5-	complex events
SL3.0ch01	mRNA:Solyc01g095740.3.1	mRNA:Solyc01g095745.1.1	86825681	86825873	-	1^6-,2^3-4^5-	complex events
SL3.0ch12	mRNA:Solyc12g013670.2.1	mRNA:Solyc12g013665.1.1	4508361	4508459	+	1^6-,2^3-4^5-	complex events
SL3.0ch06	mRNA:Solyc06g053510.3.1	mRNA:Solyc06g053520.3.1	36399345	36400354	+	1^6-,2^3-4^5-	complex events
SL3.0ch02	mRNA:Solyc02g014340.1.1	mRNA:Solyc02g014325.1.1	16254895	16255636	+	1^6-,2^3-4^5-	complex events
SL3.0ch08	CUFF.21990.4	CUFF.21990.3	38124999	38127167	-	1^2-5^6-7^8-,3^4-	complex events
SL3.0ch07	CUFF.20319.2	CUFF.20319.3	62132420	62132767	+	1^2-5^6-7^8-,3^4-	complex events
SL3.0ch06	CUFF.17210.2	CUFF.17210.5	37340561	37341126	+	1^2-5^6-7^8-,3^4-	complex events
SL3.0ch03	CUFF.7930.3	CUFF.7930.4	4011819	4012420	+	1^2-5^6-7^8-,3^4-	complex events
SL3.0ch02	mRNA:Solyc02g070330.3.1	mRNA:Solyc02g070340.3.1	40678804	40682185	+	1-2^3-4^5-6^7-8^,0	complex events
SL3.0ch08	mRNA:Solyc08g005710.3.1	mRNA:Solyc08g005720.3.1	568420	570218	+	1-2^3-4^5-6^7-8^,0	complex events
SL3.0ch10	mRNA:Solyc10g006215.1.1	mRNA:Solyc10g006220.3.1	904397	905238	-	1-2^3-4^5-6^7-8^,0	complex events
SL3.0ch02	mRNA:Solyc02g084170.2.1	mRNA:Solyc02g084163.1.1	47906245	47907023	-	1-2^3-4^5-6^7-8^,0	complex events
SL3.0ch02	CUFF.5927.3	mRNA:Solyc02g071670.3.1	41601204	41605313	+	1^,2^3-4^5-6^	complex events
SL3.0ch02	mRNA:Solyc02g093190.3.1	mRNA:Solyc02g093197.1.1	54784968	54786000	+	1^,2^3-4^5-6^	complex events
SL3.0ch08	mRNA:Solyc08g005314.1.1	mRNA:Solyc08g005330.1.1	254488	255888	+	1^,2^3-4^5-6^	complex events
SL3.0ch12	CUFF.32430.1	mRNA:Solyc12g040520.2.1	55113875	55115128	-	1^,2^3-4^5-6^	complex events
SL3.0ch01	mRNA:Solyc01g107680.3.1	mRNA:Solyc01g107695.1.1	95043630	95046589	+	1^3-4^,2^5-6^	complex events
SL3.0ch01	mRNA:Solyc01g107420.2.1	mRNA:Solyc01g107415.1.1	94885727	94886900	+	1^3-4^,2^5-6^	complex events
SL3.0ch04	mRNA:Solyc04g054510.3.1	mRNA:Solyc04g054520.3.1	52579613	52582555	-	1^3-4^,2^5-6^	complex events
SL3.0ch01	mRNA:Solyc01g060460.2.1	mRNA:Solyc01g060455.1.1	70967109	70967983	-	1^3-4^,2^5-6^	complex events
SL3.0ch10	mRNA:Solyc10g049665.1.1	mRNA:Solyc10g049680.1.1	46299603	46299991	+	1^3-4^5-,2^6-	complex events
SL3.0ch01	mRNA:Solyc01g099920.3.1	CUFF.3419.2	89919594	89921247	-	1^3-4^5-,2^6-	complex events
SL3.0ch10	mRNA:Solyc10g044745.1.1	mRNA:Solyc10g044750.2.1	27623012	27623480	-	1^3-4^5-,2^6-	complex events
SL3.0ch04	mRNA:Solyc04g076170.1.1	mRNA:Solyc04g076157.1.1	61197957	61198342	-	1^3-4^5-,2^6-	complex events
SL3.0ch02	CUFF.7156.3	mRNA:Solyc02g090135.1.1	52416267	52416917	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-15^16-,0	complex events
SL3.0ch08	CUFF.23326.1	mRNA:Solyc08g081760.2.1	64845798	64847705	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-15^16-,0	complex events
SL3.0ch03	mRNA:Solyc03g115590.3.1	CUFF.10061.2	66725679	66727071	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-15^16-,0	complex events
SL3.0ch03	CUFF.10006.3	mRNA:Solyc03g115167.1.1	66456197	66457574	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-15^16-,0	complex events
SL3.0ch10	mRNA:Solyc10g062055.1.1	mRNA:Solyc10g062060.1.1	23961662	23962311	+	1^8-,2^3-4^5-6^7-	complex events
SL3.0ch01	mRNA:Solyc01g098520.3.1	mRNA:Solyc01g098523.1.1	88889751	88891492	-	1^8-,2^3-4^5-6^7-	complex events
SL3.0ch12	mRNA:Solyc12g036600.2.1	mRNA:Solyc12g036595.1.1	47269381	47269596	-	1^8-,2^3-4^5-6^7-	complex events
SL3.0ch06	CUFF.18307.3	mRNA:Solyc06g083090.3.1	48697613	48699421	-	1^8-,2^3-4^5-6^7-	complex events
SL3.0ch07	CUFF.18472.2	CUFF.18472.1	204907	209682	-	1^2-3^4-5^6-,7^8-9^10-	complex events
SL3.0ch07	CUFF.20743.1	CUFF.20743.3	66649537	66650043	-	1^2-3^4-5^6-,7^8-9^10-	complex events
SL3.0ch01	CUFF.2970.1	CUFF.2970.3	85847409	85848189	-	1^2-3^4-5^6-,7^8-9^10-	complex events
SL3.0ch09	CUFF.25255.3	CUFF.25255.1	62154855	62157656	-	1^2-3^4-5^6-,7^8-9^10-	complex events
SL3.0ch01	CUFF.629.2	mRNA:Solyc01g008400.3.1	2419732	2420803	+	1^2-3^4-5^6-7^8-,9^10-	complex events
SL3.0ch02	CUFF.6624.1	CUFF.6624.4	47914668	47918764	-	1^2-3^4-5^6-7^8-,9^10-	complex events
SL3.0ch02	CUFF.7062.1	CUFF.7062.3	51541577	51543674	+	1^2-3^4-5^6-7^8-,9^10-	complex events
SL3.0ch09	CUFF.23870.1	mRNA:Solyc09g010910.2.1	4243982	4244911	+	1-3^4-5^6-,2-	complex events
SL3.0ch01	CUFF.2162.1	mRNA:Solyc01g067570.3.1	76194158	76194690	+	1-3^4-5^6-,2-	complex events
SL3.0ch08	mRNA:Solyc08g074865.1.1	CUFF.22824.4	59125084	59125389	+	1-3^4-5^6-,2-	complex events
SL3.0ch11	CUFF.28781.1	mRNA:Solyc11g007340.2.1	1717545	1722888	+	1^2-3^4-6^,5^	complex events
SL3.0ch05	CUFF.15390.2	CUFF.15390.5	61845240	61847086	+	1^2-3^4-6^,5^	complex events
SL3.0ch02	CUFF.7014.1	CUFF.7014.3	51127886	51128783	-	1^2-3^4-6^,5^	complex events
SL3.0ch11	mRNA:Solyc11g007340.2.1	mRNA:Solyc11g007345.1.1	1721956	1722888	+	1^2-3^4-5^,6^	complex events
SL3.0ch03	CUFF.9323.3	mRNA:Solyc03g095377.1.1	57878266	57881042	+	1^2-3^4-5^,6^	complex events
SL3.0ch02	mRNA:Solyc02g014095.1.1	mRNA:Solyc02g014130.2.1	15488672	15489759	-	1^2-3^4-5^,6^	complex events
SL3.0ch06	mRNA:Solyc06g031675.1.1	mRNA:Solyc06g031690.3.1	20706059	20706732	+	1-3^5-6^,2-4^	complex events
SL3.0ch06	mRNA:Solyc06g008065.1.1	CUFF.16033.2	1954545	1954888	-	1-3^5-6^,2-4^	complex events
SL3.0ch05	mRNA:Solyc05g013203.1.1	mRNA:Solyc05g013210.3.1	6277811	6278078	+	1-3^5-6^,2-4^	complex events
SL3.0ch02	CUFF.5836.1	CUFF.5836.2	40932379	40934884	-	1^2-3^4-5^6-,7^8-	complex events
SL3.0ch01	CUFF.4143.2	CUFF.4143.1	95996227	95997192	-	1^2-3^4-5^6-,7^8-	complex events
SL3.0ch08	CUFF.21243.3	CUFF.21243.2	2640538	2641652	-	1^2-3^4-5^6-,7^8-	complex events
SL3.0ch02	mRNA:Solyc02g089780.3.1	mRNA:Solyc02g089790.3.1	52119113	52119258	+	1-3^,2-4^	complex events
SL3.0ch09	mRNA:Solyc09g091560.3.1	mRNA:Solyc09g091565.1.1	71299221	71299320	+	1-3^,2-4^	complex events
SL3.0ch04	CUFF.11577.1	mRNA:Solyc04g026227.1.1	18213623	18213717	-	1-3^,2-4^	complex events
SL3.0ch02	CUFF.7156.3	mRNA:Solyc02g090135.1.1	52419957	52420936	-	1^2-3^4-5^6-7^8-9^10-11^12-13^14-15^16-17^18-19^20-,0	complex events
SL3.0ch10	CUFF.27331.3	mRNA:Solyc10g047540.2.1	41019916	41021130	+	1^2-3^4-5^6-7^8-9^10-11^12-13^14-15^16-17^18-19^20-,0	complex events
SL3.0ch10	CUFF.27331.2	mRNA:Solyc10g047540.2.1	41021088	41022164	+	1^2-3^4-5^6-7^8-9^10-11^12-13^14-15^16-17^18-19^20-,0	complex events
SL3.0ch08	mRNA:Solyc08g005350.3.1	mRNA:Solyc08g005318.1.1	264447	274872	+	1^10-,2^3-4^5-6^7-8^9-	complex events
SL3.0ch07	mRNA:Solyc07g005020.3.1	mRNA:Solyc07g005030.3.1	47685	48619	-	1^10-,2^3-4^5-6^7-8^9-	complex events
SL3.0ch11	mRNA:Solyc11g017090.2.1	mRNA:Solyc11g017077.1.1	7884130	7886607	-	1^10-,2^3-4^5-6^7-8^9-	complex events
SL3.0ch01	mRNA:Solyc01g099920.3.1	mRNA:Solyc01g099930.3.1	89919584	89920145	-	1-2^3-4^6-,5-	complex events
SL3.0ch12	mRNA:Solyc12g049190.2.1	mRNA:Solyc12g049200.1.1	61551051	61551566	+	1-2^3-4^6-,5-	complex events
SL3.0ch04	mRNA:Solyc04g079047.1.1	mRNA:Solyc04g079070.3.1	63738808	63739941	-	1-2^3-4^6-,5-	complex events
SL3.0ch01	mRNA:Solyc01g104910.3.1	mRNA:Solyc01g104915.1.1	93122386	93123812	-	1^3-4^5-6^,2^	complex events
SL3.0ch02	CUFF.6496.3	mRNA:Solyc02g082650.3.1	46853865	46855383	+	1^3-4^5-6^,2^	complex events
SL3.0ch02	CUFF.7014.2	mRNA:Solyc02g088400.3.1	51127886	51128221	-	1^3-4^5-6^,2^	complex events
SL3.0ch06	mRNA:Solyc06g036240.2.1	CUFF.16664.7	25805527	25805938	+	1^,2^3-4^5-6^7-8^	complex events
SL3.0ch03	mRNA:Solyc03g025410.3.1	mRNA:Solyc03g025390.3.1	2842944	2844223	-	1^,2^3-4^5-6^7-8^	complex events
SL3.0ch03	mRNA:Solyc03g025410.3.1	mRNA:Solyc03g025400.3.1	2848610	2849929	-	1^,2^3-4^5-6^7-8^	complex events
SL3.0ch10	mRNA:Solyc10g083630.2.1	mRNA:Solyc10g083635.1.1	63541284	63541853	-	1^2-3^4-5^8-,6^7-	complex events
SL3.0ch02	CUFF.7045.3	mRNA:Solyc02g088945.1.1	51501981	51502592	+	1^2-3^4-5^8-,6^7-	complex events
SL3.0ch07	CUFF.19449.2	CUFF.19449.1	33700544	33706930	+	1^2-,3^4-5^6-7^8-9^10-11^12-	complex events
SL3.0ch08	CUFF.23326.2	CUFF.23326.3	64846690	64847705	-	1^2-,3^4-5^6-7^8-9^10-11^12-	complex events
SL3.0ch06	mRNA:Solyc06g031675.1.1	mRNA:Solyc06g031690.3.1	20702266	20705956	+	1-2^3-4^5-6^7-8^10-,9-	complex events
SL3.0ch02	mRNA:Solyc02g091620.2.1	mRNA:Solyc02g091625.1.1	53507639	53509515	+	1-2^3-4^5-6^7-8^10-,9-	complex events
SL3.0ch06	CUFF.16033.3	mRNA:Solyc06g008065.1.1	1954545	1954888	-	1-4^,2-3^	complex events
SL3.0ch01	mRNA:Solyc01g105820.3.1	mRNA:Solyc01g105827.1.1	93759608	93759808	+	1-4^,2-3^	complex events
SL3.0ch05	mRNA:Solyc05g050805.1.1	CUFF.15390.5	61845240	61847086	+	1^2-3^5-6^,4^	complex events
SL3.0ch03	mRNA:Solyc03g034200.3.1	mRNA:Solyc03g034201.1.1	5922188	5922927	-	1^2-3^5-6^,4^	complex events
SL3.0ch05	CUFF.15390.3	CUFF.15390.5	61845240	61847266	+	1^2-3^5-,4^6-	complex events
SL3.0ch09	CUFF.23505.2	mRNA:Solyc09g005523.1.1	348733	350110	+	1^2-3^5-,4^6-	complex events
SL3.0ch06	CUFF.17767.2	mRNA:Solyc06g069665.1.1	43510451	43511602	+	1-2^3-4^5-6^7-,8-	complex events
SL3.0ch06	CUFF.18307.3	mRNA:Solyc06g083090.3.1	48695648	48696399	-	1-2^3-4^5-6^7-,8-	complex events
SL3.0ch02	CUFF.5289.1	CUFF.5289.3	34237221	34240647	-	1-2^8-,3-4^5-6^7-	complex events
SL3.0ch05	mRNA:Solyc05g055420.3.1	CUFF.15730.4	65935311	65936506	-	1-2^8-,3-4^5-6^7-	complex events
SL3.0ch08	CUFF.21243.1	CUFF.21243.2	2640666	2641745	-	1^2-,3^4-5^6-7^8-9^10-	complex events
SL3.0ch03	CUFF.7739.3	CUFF.7739.1	1846010	1847329	+	1^2-,3^4-5^6-7^8-9^10-	complex events
SL3.0ch12	mRNA:Solyc12g019627.1.1	mRNA:Solyc12g019680.1.1	10999684	11000295	-	1^2-3^,4^5-6^	complex events
SL3.0ch08	mRNA:Solyc08g065600.1.1	CUFF.22441.4	53809610	53810110	+	1^2-3^,4^5-6^	complex events
SL3.0ch03	mRNA:Solyc03g059435.1.1	CUFF.8664.3	31926561	31927204	-	1^5-6^8-,2^3-4^7-	complex events
SL3.0ch12	mRNA:Solyc12g056690.1.1	mRNA:Solyc12g056673.1.1	63646723	63647348	-	1^5-6^8-,2^3-4^7-	complex events
SL3.0ch10	CUFF.26324.1	CUFF.26324.2	2005457	2005913	+	1^2-5^6-,3^4-	complex events
SL3.0ch00	mRNA:Solyc00g084650.2.1	mRNA:Solyc00g084760.1.1	14211128	14211484	-	1^2-5^6-,3^4-	complex events
SL3.0ch05	CUFF.13564.1	mRNA:Solyc05g006705.1.1	1373828	1375074	+	1-2^3-4^5-,6-	complex events
SL3.0ch02	CUFF.6511.4	CUFF.6511.3	46980011	46981213	+	1-2^3-4^5-,6-	complex events
SL3.0ch04	mRNA:Solyc04g071140.3.1	mRNA:Solyc04g071155.1.1	58162047	58163187	+	1-4^5-,2-3^6-	complex events
SL3.0ch02	CUFF.6624.2	mRNA:Solyc02g084180.2.1	47918800	47920452	-	1-4^5-,2-3^6-	complex events
SL3.0ch08	mRNA:Solyc08g068250.3.1	mRNA:Solyc08g068270.3.1	57423166	57424333	-	1-2^5-,3-4^6-	complex events
SL3.0ch03	mRNA:Solyc03g117470.3.1	mRNA:Solyc03g117480.3.1	68100103	68101207	-	1-2^5-,3-4^6-	complex events
SL3.0ch03	CUFF.10358.1	CUFF.10358.2	69204262	69205115	-	1^2-3^6-,4^5-	complex events
SL3.0ch02	CUFF.7045.4	mRNA:Solyc02g088945.1.1	51502277	51502592	+	1^2-3^6-,4^5-	complex events
SL3.0ch11	CUFF.29304.1	mRNA:Solyc11g017230.2.1	8035283	8036130	-	1-,2-3^4-5^6-7^8-	complex events
SL3.0ch02	CUFF.7051.1	mRNA:Solyc02g088952.1.1	51510928	51511774	+	1-,2-3^4-5^6-7^8-	complex events
SL3.0ch06	mRNA:Solyc06g076250.3.1	CUFF.18159.2	47509841	47510718	+	1^2-3^5-6^7-8^,4^	complex events
SL3.0ch02	CUFF.7014.1	mRNA:Solyc02g088400.3.1	51127886	51128546	-	1^2-3^5-6^7-8^,4^	complex events
SL3.0ch02	CUFF.6496.4	mRNA:Solyc02g082650.3.1	46853865	46855491	+	1^4-5^6-7^8-,2^3-	complex events
SL3.0ch02	mRNA:Solyc02g088950.2.1	mRNA:Solyc02g088954.1.1	51513409	51515170	+	1^4-5^6-7^8-,2^3-	complex events
SL3.0ch12	mRNA:Solyc12g006990.2.1	mRNA:Solyc12g006995.1.1	1429165	1429819	-	1-2^4-,3-5^6-	complex events
SL3.0ch01	mRNA:Solyc01g008980.3.1	mRNA:Solyc01g008977.1.1	2932034	2933618	+	1-2^3-4^5-6^8-9^10-,7-	complex events
SL3.0ch09	mRNA:Solyc09g015630.2.1	mRNA:Solyc09g015613.1.1	10502121	10504358	-	1^2-4^5-6^7-8^9-10^11-12^13-14^15-16^17-18^19-20^21-22^23-24^25-26^27-28^29-30^32-33^35-36^38-39^40-,3^31-34^37-	complex events
SL3.0ch05	mRNA:Solyc05g041715.1.1	mRNA:Solyc05g041720.1.1	54283882	54287463	-	1^6-7^10-,2^3-4^5-8^9-11^12-	complex events
SL3.0ch09	mRNA:Solyc09g015490.3.1	mRNA:Solyc09g015495.1.1	9225387	9226327	-	1-6^,2-3^4-5^	complex events
SL3.0ch05	mRNA:Solyc05g045930.1.1	mRNA:Solyc05g045923.1.1	58471195	58473209	+	1^2-4^10-,3^5-6^7-8^9-	complex events
SL3.0ch01	mRNA:Solyc01g010470.2.1	mRNA:Solyc01g010465.1.1	5307745	5309159	+	1^4-6^8-,2^3-5^7-	complex events
SL3.0ch08	CUFF.21990.2	CUFF.21990.4	38124563	38125552	-	1^2-3^4-5^6-7^8-,9^10-11^12-	complex events
SL3.0ch08	CUFF.21990.2	CUFF.21990.3	38125193	38125754	-	1^2-3^4-5^6-7^8-9^10-11^,12^	complex events
SL3.0ch10	mRNA:Solyc10g083710.2.1	mRNA:Solyc10g083720.2.1	63605191	63606336	+	1-2^6-,3-4^5-	complex events
SL3.0ch09	mRNA:Solyc09g042300.2.1	mRNA:Solyc09g042305.1.1	22991850	22992837	-	1^3-5^6-7^8-,2^4-	complex events
SL3.0ch09	CUFF.24326.2	mRNA:Solyc09g018845.1.1	17582868	17583137	+	1^3-5^7-,2^4-6^8-	complex events
SL3.0ch07	CUFF.20319.3	CUFF.20319.4	62132483	62132859	+	1^2-7^8-,3^4-5^6-	complex events
SL3.0ch01	mRNA:Solyc01g111100.4.1	mRNA:Solyc01g111105.1.1	97394562	97395758	-	1^3-4^8-,2^5-6^7-	complex events
SL3.0ch03	mRNA:Solyc03g095370.3.1	mRNA:Solyc03g095377.1.1	57878266	57881042	+	1^2-3^5-6^,4^7-8^	complex events
SL3.0ch02	mRNA:Solyc02g070920.3.1	mRNA:Solyc02g070915.1.1	41066880	41069039	-	1^5-6^8-9^10-,2^3-4^7-	complex events
SL3.0ch05	mRNA:Solyc05g050740.3.1	mRNA:Solyc05g050735.1.1	61719680	61722170	+	1^3-5^,2^4-6^	complex events
SL3.0ch05	mRNA:Solyc05g050740.3.1	mRNA:Solyc05g050735.1.1	61722483	61725650	+	1^5-6^9-10^13-,2^3-4^7-8^11-12^14-	complex events
SL3.0ch11	mRNA:Solyc11g072140.2.1	mRNA:Solyc11g072150.2.1	55680315	55681246	-	1-2^3-,4-5^6-	complex events
SL3.0ch11	mRNA:Solyc11g069930.2.1	mRNA:Solyc11g069925.1.1	54823818	54827344	+	1^7-,2^3-4^5-6^8-	complex events
SL3.0ch01	CUFF.4133.3	mRNA:Solyc01g108935.1.1	95979757	95980738	+	1-3^5-,2-4^6-	complex events
SL3.0ch03	CUFF.8411.2	CUFF.8411.1	20026053	20027811	-	1^2-3^4-,5^6-7^8-9^10-	complex events
SL3.0ch02	mRNA:Solyc02g090040.2.1	mRNA:Solyc02g090043.1.1	52343487	52345250	+	1-2^4-5^11-12^,3-6^7-8^9-10^	complex events
SL3.0ch12	mRNA:Solyc12g021313.1.1	mRNA:Solyc12g021317.1.1	15397811	15398109	-	1^4-6^,2^3-5^	complex events
SL3.0ch03	mRNA:Solyc03g058243.1.1	mRNA:Solyc03g058250.1.1	25770317	25770780	-	1-2^4-5^6-7^8-,3-	complex events
SL3.0ch02	mRNA:Solyc02g092145.1.1	mRNA:Solyc02g092150.3.1	53977320	53977601	+	1-4^6-,2-3^5-	complex events
SL3.0ch01	CUFF.410.2	mRNA:Solyc01g005100.3.1	94017	95656	-	1^2-3^4-5^6-7^8-10^,9^	complex events
SL3.0ch01	mRNA:Solyc01g005380.2.1	mRNA:Solyc01g005385.1.1	263296	263567	+	1-2^3-5^,4-6^	complex events
SL3.0ch02	CUFF.5515.3	CUFF.5515.2	38016709	38025871	-	1^2-3^4-5^6-7^8-10^11-,9^12-13^14-	complex events
SL3.0ch02	mRNA:Solyc02g064595.1.1	mRNA:Solyc02g064630.3.1	36292202	36295046	+	1-2^4-5^7-8^,3-6^	complex events
SL3.0ch02	mRNA:Solyc02g036270.3.1	CUFF.5164.1	30964243	30966871	+	1^4-5^7-,2^3-6^8-	complex events
SL3.0ch01	CUFF.3738.2	CUFF.3738.1	92717360	92719914	-	1^2-3^4-5^6-11^12-,7^8-9^10-	complex events
SL3.0ch01	mRNA:Solyc01g104340.2.1	mRNA:Solyc01g104345.1.1	92632416	92635320	+	1^5-6^7-8^11-12^14-,2^3-4^9-10^13-	complex events
SL3.0ch01	mRNA:Solyc01g105190.3.1	mRNA:Solyc01g105225.1.1	93352884	93354751	+	1^2-3^6-7^8-9^10-11^13-14^15-18^19-,4^5-12^16-17^20-	complex events
SL3.0ch03	CUFF.8973.2	mRNA:Solyc03g078480.2.1	52417047	52417923	+	1^5-7^11-13^16-,2^3-4^6-8^9-10^12-14^15-	complex events
SL3.0ch03	CUFF.8973.2	CUFF.8973.5	52417047	52417667	+	1^5-7^9-,2^3-4^6-8^10-	complex events
SL3.0ch03	CUFF.8973.2	CUFF.8973.5	52418753	52419334	+	1^2-3^4-5^6-7^8-9^10-,11^12-	complex events
SL3.0ch03	mRNA:Solyc03g078480.2.1	CUFF.8973.5	52417748	52418108	+	1^4-,2^3-5^6-7^8-	complex events
SL3.0ch03	mRNA:Solyc03g078280.2.1	mRNA:Solyc03g078270.1.1	51727121	51727595	+	1^3-5^6-7^9-,2^4-8^10-	complex events
SL3.0ch06	CUFF.16736.1	mRNA:Solyc06g043275.1.1	28973545	28974561	+	1^2-3^6-7^8-,4^5-	complex events
SL3.0ch06	CUFF.16664.6	CUFF.16664.9	25807450	25808255	+	1-2^3-5^6-,4-	complex events
SL3.0ch10	CUFF.27331.3	CUFF.27331.2	41020178	41022164	+	1^2-3^4-5^6-,7^8-9^10-11^12-13^14-15^16-	complex events
SL3.0ch06	CUFF.17210.3	CUFF.17210.5	37340561	37341227	+	1^2-5^6-,3^4-7^8-	complex events
SL3.0ch10	mRNA:Solyc10g045585.1.1	mRNA:Solyc10g045590.1.1	34738716	34739620	+	1-2^3-4^5-6^7-8^9-10^11-12^13-14^15-16^17-,18-	complex events
SL3.0ch08	mRNA:Solyc08g082830.3.1	mRNA:Solyc08g082840.2.1	65618312	65619036	-	1^3-4^5-6^7-,2^8-	complex events
SL3.0ch03	CUFF.7739.2	CUFF.7739.3	1845430	1847757	+	1^2-3^4-5^6-11^12-13^14-15^16-,7^8-9^10-	complex events
SL3.0ch11	CUFF.30085.2	mRNA:Solyc11g042883.1.1	34310537	34310831	-	1^2-4^5-6^7-,3^8-	complex events
SL3.0ch07	CUFF.18472.3	CUFF.18472.2	207713	210103	-	1^2-3^9-11^13-,4^5-6^7-8^10-12^14-15^16-	complex events
SL3.0ch07	CUFF.18472.3	CUFF.18472.1	206792	210103	-	1^2-,3^4-5^6-7^8-9^10-11^12-13^14-15^16-	complex events
SL3.0ch07	CUFF.18472.3	mRNA:Solyc07g005230.2.1	207618	209682	-	1^7-9^11-13^16-,2^3-4^5-6^8-10^12-14^15-	complex events
SL3.0ch07	CUFF.18472.2	mRNA:Solyc07g005215.1.1	204907	209682	-	1^7-9^11-16^17-,2^3-4^5-6^8-10^12-13^14-15^18-19^20-21^22-23^24-	complex events
SL3.0ch07	mRNA:Solyc07g005215.1.1	mRNA:Solyc07g005230.2.1	206792	209682	-	1^7-9^11-13^16-18^19-,2^3-4^5-6^8-10^12-14^15-17^20-21^22-	complex events
SL3.0ch01	mRNA:Solyc01g073745.1.1	mRNA:Solyc01g073750.3.1	81002881	81003304	+	1^4-5^,2^3-6^	complex events
SL3.0ch11	mRNA:Solyc11g028315.1.1	mRNA:Solyc11g028330.2.1	21340959	21343150	+	1-2^7-8^,3-4^5-6^9-10^	complex events
SL3.0ch04	mRNA:Solyc04g081755.1.1	mRNA:Solyc04g081800.2.1	65787769	65788061	+	1-3^4-5^7-,2-6^8-	complex events
SL3.0ch12	mRNA:Solyc12g049460.2.1	CUFF.32704.3	62012082	62013906	+	1-2^3-4^5-6^7-8^9-10^14-,11-12^13-	complex events
SL3.0ch12	CUFF.32686.2	mRNA:Solyc12g049190.2.1	61550513	61550763	+	1^2-4^6-,3^5-	complex events
SL3.0ch12	CUFF.32686.2	mRNA:Solyc12g049190.2.1	61551051	61552059	+	1-2^3-4^6-,5-7^8-	complex events
SL3.0ch04	CUFF.11577.2	mRNA:Solyc04g026220.3.1	18192355	18193383	-	1^12-,2^3-4^5-6^7-8^9-10^11-	complex events
SL3.0ch04	mRNA:Solyc04g050840.1.1	CUFF.12207.2	48659966	48660565	-	1-4^6-8^10-,2-3^5-7^9-	complex events
SL3.0ch07	CUFF.20747.1	CUFF.20747.2	66693196	66694741	-	1^4-,2^3-5^6-	complex events
SL3.0ch11	CUFF.30188.1	mRNA:Solyc11g039980.2.1	40538707	40540162	+	1^2-3^4-5^6-7^8-9^10-11^12-13^14-15^16-17^18-,0	complex events
SL3.0ch08	mRNA:Solyc08g078115.1.1	mRNA:Solyc08g078120.1.1	62075571	62078086	-	1^3-6^7-8^9-10^11-12^13-14^15-16^17-18^19-,2^4-5^20-	complex events
SL3.0ch03	CUFF.7930.2	CUFF.7930.3	4011431	4012420	+	1^2-3^4-7^8-9^10-,5^6-	complex events
SL3.0ch03	mRNA:Solyc03g031740.2.1	mRNA:Solyc03g031730.3.1	4209336	4212149	-	1^3-4^5-6^7-8^,2^	complex events
SL3.0ch01	CUFF.2601.1	mRNA:Solyc01g087336.1.1	82180175	82182069	-	1^3-4^5-6^7-8^9-10^11-12^13-14^15-16^17-18^19-20^21-22^23-25^26-27^28-29^30-,2^24-	complex events
SL3.0ch01	CUFF.2601.2	mRNA:Solyc01g087336.1.1	82180534	82182069	-	1^3-4^5-6^7-8^9-10^11-12^13-14^15-16^17-18^19-20^21-22^23-,2^24-	complex events
SL3.0ch08	mRNA:Solyc08g066120.3.1	mRNA:Solyc08g066140.3.1	54619826	54620781	+	1^2-3^5-7^8-9^10-11^12-13^14-,4^6-	complex events
SL3.0ch04	mRNA:Solyc04g072065.1.1	mRNA:Solyc04g072100.1.1	59237893	59238148	+	1^3-4^5-7^8-,2^6-	complex events
SL3.0ch04	mRNA:Solyc04g007825.1.1	mRNA:Solyc04g007830.3.1	1505307	1505970	+	1^2-4^5-,3^6-	complex events
SL3.0ch04	mRNA:Solyc04g071140.3.1	mRNA:Solyc04g071155.1.1	58161360	58161828	+	1^2-4^8-,3^5-6^7-	complex events
SL3.0ch04	CUFF.12632.2	mRNA:Solyc04g071155.1.1	58161230	58161828	+	1^2-3^4-6^10-,5^7-8^9-	complex events
SL3.0ch08	mRNA:Solyc08g068250.3.1	mRNA:Solyc08g068270.3.1	57424659	57425140	-	1-2^,3-4^5-6^	complex events
SL3.0ch05	mRNA:Solyc05g055100.2.1	mRNA:Solyc05g055105.1.1	65750729	65751318	-	1^2-3^5-8^9-,4^6-7^10-	complex events
SL3.0ch05	mRNA:Solyc05g052430.2.1	mRNA:Solyc05g052460.3.1	63524343	63525199	-	1^5-6^,2^3-4^	complex events
SL3.0ch03	CUFF.10358.2	mRNA:Solyc03g118995.1.1	69204207	69205115	-	1^2-3^7-,4^5-6^8-	complex events
SL3.0ch03	CUFF.10127.1	CUFF.10127.2	67365233	67366257	-	1^2-3^4-,5^6-7^8-	complex events
SL3.0ch11	mRNA:Solyc11g018857.1.1	mRNA:Solyc11g019860.2.1	9719493	9720688	+	1^3-4^9-,2^5-6^7-8^10-	complex events
SL3.0ch06	mRNA:Solyc06g076253.1.1	mRNA:Solyc06g076230.1.1	47511048	47513111	-	1^3-4^5-6^7-8^9-10^11-12^13-14^15-16^17-18^19-20^21-22^23-24^25-26^27-28^29-30^31-32^34-35^36-37^38-,2^33-	complex events
SL3.0ch06	mRNA:Solyc06g076250.3.1	mRNA:Solyc06g076257.1.1	47509841	47510718	+	1^2-3^4-5^6-7^9-10^11-12^,8^	complex events
SL3.0ch06	mRNA:Solyc06g074240.2.1	mRNA:Solyc06g074250.3.1	46044737	46045810	-	1^3-6^7-8^,2^4-5^	complex events
SL3.0ch10	CUFF.26190.1	mRNA:Solyc10g006157.1.1	895956	899097	-	1^2-4^,3^5-6^7-8^	complex events
SL3.0ch10	mRNA:Solyc10g006690.3.1	mRNA:Solyc10g006670.1.1	1161062	1161323	-	1^5-8^,2^3-4^6-7^	complex events
SL3.0ch02	CUFF.6511.1	CUFF.6511.2	46975995	46979217	+	1^4-5^6-7^8-9^10-11^12-,2^3-	complex events
SL3.0ch02	CUFF.6511.1	CUFF.6511.4	46975297	46979811	+	1^2-4^5-15^16-,3^6-7^8-9^10-11^12-13^14-	complex events
SL3.0ch02	CUFF.6511.2	CUFF.6511.4	46977516	46979811	+	1^3-6^8-10^11-,2^4-5^7-9^12-13^14-	complex events
SL3.0ch02	CUFF.6511.2	CUFF.6511.4	46980011	46981954	+	1-2^3-4^5-,6-7^8-9^10-	complex events
SL3.0ch02	CUFF.6511.2	mRNA:Solyc02g082763.1.1	46977516	46978696	+	1^3-5^7-8^10-,2^4-6^9-	complex events
SL3.0ch02	CUFF.6490.3	CUFF.6490.2	46821019	46825508	+	1^2-3^4-7^8-,5^6-9^10-11^12-	complex events
SL3.0ch02	CUFF.6490.2	CUFF.6490.1	46818589	46823163	+	1^2-3^4-9^11-,5^6-7^8-10^12-13^14-	complex events
SL3.0ch02	CUFF.6490.2	mRNA:Solyc02g082630.2.1	46822057	46823163	+	1^2-4^6-7^8-,3^5-	complex events
SL3.0ch02	CUFF.6490.1	mRNA:Solyc02g082613.1.1	46822403	46822889	+	1^3-4^5-6^8-,2^7-	complex events
SL3.0ch02	mRNA:Solyc02g082617.1.1	CUFF.6496.4	46852974	46853991	+	1-2^3-4^8-,5-6^7-	complex events
SL3.0ch02	mRNA:Solyc02g082617.1.1	CUFF.6496.3	46852938	46854317	+	1^2-3^4-5^8-9^10-,6^7-	complex events
SL3.0ch02	mRNA:Solyc02g082617.1.1	mRNA:Solyc02g082650.3.1	46852974	46855383	+	1-2^3-4^9-10^11-12^,5-6^7-8^13-14^15-16^	complex events
SL3.0ch02	CUFF.6475.1	mRNA:Solyc02g082435.1.1	46684085	46686551	-	1^2-3^4-5^6-7^,8^9-10^11-12^	complex events
SL3.0ch09	mRNA:Solyc09g059285.1.1	mRNA:Solyc09g059290.3.1	54400076	54400776	+	1-2^5-6^8-,3-4^7-	complex events
SL3.0ch09	CUFF.25255.3	CUFF.25255.2	62154855	62157306	-	1^2-5^6-,3^4-7^8-9^10-	complex events
SL3.0ch01	CUFF.2135.4	mRNA:Solyc01g067215.1.1	75446579	75448754	+	1^6-7^8-,2^3-4^5-	complex events
SL3.0ch02	CUFF.6638.1	mRNA:Solyc02g084310.2.1	47999311	48001294	+	1^3-,2^4-5^6-	complex events
SL3.0ch02	CUFF.6621.5	mRNA:Solyc02g084170.2.1	47903531	47904376	-	1^3-4^6-,2^5-7^8-	complex events
SL3.0ch00	CUFF.155.1	CUFF.155.3	11017530	11018470	-	1^2-3^4-5^6-9^10-,7^8-	complex events
SL3.0ch02	mRNA:Solyc02g088940.3.1	mRNA:Solyc02g088945.1.1	51501213	51502592	+	1^2-3^4-5^6-7^8-9^10-11^14-,12^13-	complex events