BLASTN 2.1.3 [Apr-11-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 991533563-27495-9092 Query= (400 letters) Database: nt 868,831 sequences; 3,298,558,333 total letters Score E Sequences producing significant alignments: (bits) Value dbj|AB031069.1|AB031069 Homo sapiens PCCX1 mRNA for protein cont... 793 0.0 ref|NM_014593.1| Homo sapiens CpG binding protein (CGBP), mRNA 779 0.0 gb|AF149758.1|AF149758 Homo sapiens CpG binding protein (CGBP) m... 779 0.0 ref|XM_008699.3| Homo sapiens CpG binding protein (CGBP), mRNA 765 0.0 emb|AL136862.1|HSM801830 Homo sapiens mRNA; cDNA DKFZp434F174 (f... 450 e-124 emb|AJ132339.1|HSA132339 Homo sapiens CpG island sequence, subcl... 446 e-123 emb|AJ236590.1|HSA236590 Homo sapiens chromosome 18 CpG island D... 406 e-111 dbj|AK010337.1|AK010337 Mus musculus ES cells cDNA, RIKEN full-l... 234 3e-59 dbj|AK017941.1|AK017941 Mus musculus adult male thymus cDNA, RIK... 210 5e-52 gb|AC009750.7|AC009750 Drosophila melanogaster, chromosome 2L, r... 46 0.017 gb|AE003580.2|AE003580 Drosophila melanogaster genomic scaffold ... 46 0.017 ref|NC_001905.1| Leishmania major chromosome 1, complete sequence 40 1.0 gb|AE001274.1|AE001274 Leishmania major chromosome 1, complete s... 40 1.0 gb|AC008299.5|AC008299 Drosophila melanogaster, chromosome 3R, r... 38 4.1 gb|AC018662.3|AC018662 Human Chromosome 7 clone RP11-339C9, comp... 38 4.1 gb|AE003774.2|AE003774 Drosophila melanogaster genomic scaffold ... 38 4.1 gb|AC008039.1|AC008039 Homo sapiens clone SCb-391H5 from 7q31, c... 38 4.1 gb|AC005315.2|AC005315 Arabidopsis thaliana chromosome II sectio... 38 4.1 emb|AL353748.13|AL353748 Human DNA sequence from clone RP11-317B... 38 4.1 ALIGNMENTS >dbj|AB031069.1|AB031069 Homo sapiens PCCX1 mRNA for protein containing CXXC domain 1, complete cds Length = 2487 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Plus Query: 1 agatggcggcgctgaggggtcttgggggctctaggccggccacctactggtttgcagcgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agatggcggcgctgaggggtcttgggggctctaggccggccacctactggtttgcagcgg 60 Query: 61 agacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaagcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 agacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaagcg 120 Query: 121 gaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcaggtt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcaggtt 180 Query: 181 cgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatggagggagat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatggagggagat 240 Query: 241 ggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatggggagaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatggggagaat 300 Query: 301 gcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcgggtgtgac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcgggtgtgac 360 Query: 361 aactgcaatgagtggttccatggggactgcatccggatca 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aactgcaatgagtggttccatggggactgcatccggatca 400 >ref|NM_014593.1| Homo sapiens CpG binding protein (CGBP), mRNA Length = 2452 Score = 779 bits (393), Expect = 0.0 Identities = 400/401 (99%), Gaps = 1/401 (0%) Strand = Plus / Plus Query: 1 agatggcggcg-ctgaggggtcttgggggctctaggccggccacctactggtttgcagcg 59 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 agatggcggcgcctgaggggtcttgggggctctaggccggccacctactggtttgcagcg 68 Query: 60 gagacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaagc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 gagacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaagc 128 Query: 120 ggaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcaggt 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 ggaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcaggt 188 Query: 180 tcgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatggagggaga 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 tcgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatggagggaga 248 Query: 240 tggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatggggagaa 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 tggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatggggagaa 308 Query: 300 tgcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcgggtgtga 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 tgcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcgggtgtga 368 Query: 360 caactgcaatgagtggttccatggggactgcatccggatca 400 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 caactgcaatgagtggttccatggggactgcatccggatca 409 >gb|AF149758.1|AF149758 Homo sapiens CpG binding protein (CGBP) mRNA, complete cds Length = 2452 Score = 779 bits (393), Expect = 0.0 Identities = 400/401 (99%), Gaps = 1/401 (0%) Strand = Plus / Plus Query: 1 agatggcggcg-ctgaggggtcttgggggctctaggccggccacctactggtttgcagcg 59 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 agatggcggcgcctgaggggtcttgggggctctaggccggccacctactggtttgcagcg 68 Query: 60 gagacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaagc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 gagacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaagc 128 Query: 120 ggaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcaggt 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 ggaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcaggt 188 Query: 180 tcgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatggagggaga 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 tcgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatggagggaga 248 Query: 240 tggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatggggagaa 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 tggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatggggagaa 308 Query: 300 tgcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcgggtgtga 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 tgcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcgggtgtga 368 Query: 360 caactgcaatgagtggttccatggggactgcatccggatca 400 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 caactgcaatgagtggttccatggggactgcatccggatca 409 >ref|XM_008699.3| Homo sapiens CpG binding protein (CGBP), mRNA Length = 2444 Score = 765 bits (386), Expect = 0.0 Identities = 400/402 (99%), Gaps = 2/402 (0%) Strand = Plus / Plus Query: 1 agatggcggcg-ctgaggggtcttg-ggggctctaggccggccacctactggtttgcagc 58 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1 agatggcggcgcctgaggggtcttgtggggctctaggccggccacctactggtttgcagc 60 Query: 59 ggagacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaag 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggagacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaag 120 Query: 119 cggaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcagg 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cggaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcagg 180 Query: 179 ttcgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatggagggag 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ttcgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatggagggag 240 Query: 239 atggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatggggaga 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 atggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatggggaga 300 Query: 299 atgcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcgggtgtg 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 atgcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcgggtgtg 360 Query: 359 acaactgcaatgagtggttccatggggactgcatccggatca 400 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 acaactgcaatgagtggttccatggggactgcatccggatca 402 >emb|AL136862.1|HSM801830 Homo sapiens mRNA; cDNA DKFZp434F174 (from clone DKFZp434F174); complete cds Length = 2320 Score = 450 bits (227), Expect = e-124 Identities = 227/227 (100%) Strand = Plus / Plus Query: 174 gcaggttcgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatgga 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 gcaggttcgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatgga 61 Query: 234 gggagatggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatgg 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 gggagatggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatgg 121 Query: 294 ggagaatgcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcgg 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 ggagaatgcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcgg 181 Query: 354 gtgtgacaactgcaatgagtggttccatggggactgcatccggatca 400 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 gtgtgacaactgcaatgagtggttccatggggactgcatccggatca 228 >emb|AJ132339.1|HSA132339 Homo sapiens CpG island sequence, subclone P1, genomic MseI fragment Length = 832 Score = 446 bits (225), Expect = e-123 Identities = 232/233 (99%), Gaps = 1/233 (0%) Strand = Plus / Plus Query: 1 agatggcggcg-ctgaggggtcttgggggctctaggccggccacctactggtttgcagcg 59 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 agatggcggcgcctgaggggtcttgggggctctaggccggccacctactggtttgcagcg 474 Query: 60 gagacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaagc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 gagacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaagc 534 Query: 120 ggaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcaggt 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 ggaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcaggt 594 Query: 180 tcgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatgg 232 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 tcgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatgg 647 >emb|AJ236590.1|HSA236590 Homo sapiens chromosome 18 CpG island DNA, genomic Mse1 fragment, clone 18CGI1D14 , complete read Length = 831 Score = 406 bits (205), Expect = e-111 Identities = 225/232 (96%), Gaps = 2/232 (0%) Strand = Plus / Minus Query: 1 agatggcggcgctgaggggtcttgggggctctaggccggccacctactggtttgcagcgg 60 |||||||||| ||||||| |||||||||||||| ||| ||||| |||||||||||||||| Sbjct: 416 agatggcggcsctgaggg-tcttgggggctctargccsgccac-tactggtttgcagcgg 359 Query: 61 agacgacgcatggggcctgcgcaataggagtacgctgcctgggaggcgtgactagaagcg 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 358 agacgacgcatggggcctgcscaataggagtacgctgcctgggaggcgtgactagaagcg 299 Query: 121 gaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcaggtt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 gaagtagttgtgggcgcctttgcaaccgcctgggacgccgccgagtggtctgtgcaggtt 239 Query: 181 cgcgggtcgctggcgggggtcgtgagggagtgcgccgggagcggagatatgg 232 |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 238 cgcgggtcgctggcgggggtngtgagggagtgcgccgggagcggagatatgg 187 >dbj|AK010337.1|AK010337 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410002I16, full insert sequence Length = 2538 Score = 234 bits (118), Expect = 3e-59 Identities = 166/182 (91%) Strand = Plus / Plus Query: 219 gagcggagatatggagggagatggttcagacccagagcctccagatgccggggaggacag 278 ||||||||||||||| |||||||| ||||||| || ||||| ||||||||||| ||||| Sbjct: 260 gagcggagatatggaaggagatggctcagacctggaacctccggatgccggggacgacag 319 Query: 279 caagtccgagaatggggagaatgcgcccatctactgcatctgccgcaaaccggacatcaa 338 |||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 320 caagtctgagaatggggagaacgctcccatctactgcatctgtcgcaaaccggacatcaa 379 Query: 339 ctgcttcatgatcgggtgtgacaactgcaatgagtggttccatggggactgcatccggat 398 ||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 380 ttgcttcatgattggatgtgacaactgcaacgagtggttccatggagactgcatccggat 439 Query: 399 ca 400 || Sbjct: 440 ca 441 Score = 44.1 bits (22), Expect = 0.066 Identities = 25/26 (96%) Strand = Plus / Plus Query: 118 gcggaagtagttgtgggcgcctttgc 143 ||||||||||||| |||||||||||| Sbjct: 147 gcggaagtagttgcgggcgcctttgc 172 >dbj|AK017941.1|AK017941 Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830420C16, full insert sequence Length = 1461 Score = 210 bits (106), Expect = 5e-52 Identities = 151/166 (90%) Strand = Plus / Plus Query: 235 ggagatggttcagacccagagcctccagatgccggggaggacagcaagtccgagaatggg 294 |||||||| ||||||| || ||||| ||||||||||| ||||||||||| ||||||||| Sbjct: 1048 ggagatggctcagacctggaacctccggatgccggggacgacagcaagtctgagaatggg 1107 Query: 295 gagaatgcgcccatctactgcatctgccgcaaaccggacatcaactgcttcatgatcggg 354 ||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| || Sbjct: 1108 gagaacgctcccatctactgcatctgtcgcaaaccggacatcaattgcttcatgattgga 1167 Query: 355 tgtgacaactgcaatgagtggttccatggggactgcatccggatca 400 |||||||||||||| |||||||||||||| |||||||||||||||| Sbjct: 1168 tgtgacaactgcaacgagtggttccatggagactgcatccggatca 1213 Score = 44.1 bits (22), Expect = 0.066 Identities = 25/26 (96%) Strand = Plus / Plus Query: 118 gcggaagtagttgtgggcgcctttgc 143 ||||||||||||| |||||||||||| Sbjct: 235 gcggaagtagttgcgggcgcctttgc 260 >gb|AC009750.7|AC009750 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone BACR15P13, complete sequence Length = 187049 Score = 46.1 bits (23), Expect = 0.017 Identities = 35/39 (89%) Strand = Plus / Plus Query: 355 tgtgacaactgcaatgagtggttccatggggactgcatc 393 |||||||| ||||| |||||||||||||| || |||||| Sbjct: 12733 tgtgacaattgcaacgagtggttccatggagattgcatc 12771 >gb|AE003580.2|AE003580 Drosophila melanogaster genomic scaffold 142000013386046 section 11 of 16, complete sequence Length = 295214 Score = 46.1 bits (23), Expect = 0.017 Identities = 35/39 (89%) Strand = Plus / Plus Query: 355 tgtgacaactgcaatgagtggttccatggggactgcatc 393 |||||||| ||||| |||||||||||||| || |||||| Sbjct: 133858 tgtgacaattgcaacgagtggttccatggagattgcatc 133896 >ref|NC_001905.1| Leishmania major chromosome 1, complete sequence Length = 268984 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgggtcgctggcgggggtcg 202 |||||||||||||||||||| Sbjct: 21543 cgggtcgctggcgggggtcg 21562 >gb|AE001274.1|AE001274 Leishmania major chromosome 1, complete sequence Length = 268984 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgggtcgctggcgggggtcg 202 |||||||||||||||||||| Sbjct: 21543 cgggtcgctggcgggggtcg 21562 >gb|AC008299.5|AC008299 Drosophila melanogaster, chromosome 3R, region 99F4-99F11, BAC clone BACR48G16, complete sequence Length = 173844 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 364 tgcaatgagtggttccatg 382 ||||||||||||||||||| Sbjct: 74583 tgcaatgagtggttccatg 74565 >gb|AC018662.3|AC018662 Human Chromosome 7 clone RP11-339C9, complete sequence [Homo sapiens] Length = 173845 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 306 catctactgcatctgccgc 324 ||||||||||||||||||| Sbjct: 55518 catctactgcatctgccgc 55500 >gb|AE003774.2|AE003774 Drosophila melanogaster genomic scaffold 142000013386035 section 99 of 105, complete sequence Length = 238986 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 364 tgcaatgagtggttccatg 382 ||||||||||||||||||| Sbjct: 72100 tgcaatgagtggttccatg 72082 >gb|AC008039.1|AC008039 Homo sapiens clone SCb-391H5 from 7q31, complete sequence Length = 197346 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 306 catctactgcatctgccgc 324 ||||||||||||||||||| Sbjct: 161359 catctactgcatctgccgc 161341 >gb|AC005315.2|AC005315 Arabidopsis thaliana chromosome II section 165 of 255 of the complete sequence. Sequence from clones T9I4, F16P2 Length = 107931 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 223 ggagatatggagggagatggttc 245 ||||||||||| ||||||||||| Sbjct: 67527 ggagatatggatggagatggttc 67549 >emb|AL353748.13|AL353748 Human DNA sequence from clone RP11-317B17 on chromosome 9, complete sequence [Homo sapiens] Length = 179155 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 192 ggcgggggtcgtgagggagtgcg 214 |||| |||||||||||||||||| Sbjct: 48258 ggcgtgggtcgtgagggagtgcg 48280 Database: nt Posted date: May 30, 2001 3:54 AM Number of letters in database: -996,408,959 Number of sequences in database: 868,831 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 436021 Number of Sequences: 868831 Number of extensions: 436021 Number of successful extensions: 7536 Number of sequences better than 10.0: 19 length of query: 400 length of database: 3,298,558,333 effective HSP length: 20 effective length of query: 380 effective length of database: 3,281,181,713 effective search space: 1246849050940 effective search space used: 1246849050940 T: 0 A: 30 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)