RPS-BLAST 2.2.19 [Nov-02-2008] Database: Pfam.v30.0 16,305 sequences; 2,821,655 total letters Searching..................................................done Query= Solyc00g005000.3.1 Eukaryotic aspartyl protease family protein (AHRD V3.3 *** AT3G20015.1) (458 letters) Score E Sequences producing significant alignments: (bits) Value gnl|CDD|317009 pfam14543, TAXi_N, Xylanase inhibitor N-terminal.... 185 6e-48 >gnl|CDD|317009 pfam14543, TAXi_N, Xylanase inhibitor N-terminal. The N- and C-termini of the members of this family are jointly necessary for creating the catalytic pocket necessary for cleaving xylanase. Phytopathogens produce xylanase that destroys plant cells, so its destruction through proteolysis is vital for plant-survival. Length = 173 Score = 185 bits (473), Expect = 6e-48 Identities = 77/177 (43%), Positives = 100/177 (56%), Gaps = 17/177 (9%) Query: 117 YFVRIGVGSPVRQQYMVIDAGSDIVWVQCQPCTHCYHQSDPVFDPSLSASFTGVPCSSSL 176 Y V I +G+P + +V+D GSD+ WVQC PC CY Q+DP+FDP S+++ VPC S L Sbjct: 1 YLVTISIGTPPQPFKLVVDTGSDLTWVQCDPC--CYSQADPLFDPYKSSTYRPVPCGSPL 58 Query: 177 CNRID-----NSGCHAGRCKYQVMYGDGSYTKGTMALETLTF----GRTVIRDVAIGCGH 227 C+ GC C Y+V YGDGS T G +A +TLT G + + GCG Sbjct: 59 CSLASCSSSPGPGCSNNTCDYEVSYGDGSSTSGDLATDTLTLNSTGGSVSVPNFVFGCGP 118 Query: 228 S-NHGMFIGAAGLLGLGGGSMSLVGQLGGQ--TGGAFSYCLVSRGTNTGSTGSLEFG 281 S G+ GA G+LGLG G +SL QL G FSYCL S ++ S+G L FG Sbjct: 119 SLLGGLPAGADGILGLGRGKLSLPSQLASAFSFGNKFSYCLSS---SSSSSGVLFFG 172 Query= Solyc00g005040.3.1 Potassium channel (AHRD V3.3 *-* D0EM91_9ROSI) (118 letters) Score E Sequences producing significant alignments: (bits) Value gnl|CDD|306526 pfam00027, cNMP_binding, Cyclic nucleotide-bindin... 65 2e-12 >gnl|CDD|306526 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain. Length = 89 Score = 64.9 bits (159), Expect = 2e-12 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 4 EYFPPKQDVILQNEAPTDLYIIVSGAVE-FIAQIEGLEQTIGKAVAGEIFGEIGVLCGRT 62 FP + + + + LYI++SG V+ + +G EQ + G+ FGE+ +L G Sbjct: 2 RSFPAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEP 61 Query: 63 QPFAVRTTEISQILRLNRTSLMNILRAN 90 + V S++L + R + +L + Sbjct: 62 RSATVVALTDSELLVIPREDFLELLERD 89 Query= Solyc00g005050.3.1 UPF0664 stress-induced protein C29B12.11c (AHRD V3.3 *** A0A151ST26_CAJCA) (195 letters) ***** No hits found ****** Query= Solyc00g005060.1.1 LOW QUALITY:Cyclin/Brf1-like TBP-binding protein (AHRD V3.3 --* AT2G01280.3) (90 letters) ***** No hits found ****** Query= Solyc00g005080.2.1 LOW QUALITY:Protein Ycf2 (AHRD V3.3 *-* YCF2_SOLLC) (95 letters) ***** No hits found ****** Query= Solyc00g005084.1.1 UDP-Glycosyltransferase superfamily protein (AHRD V3.3 --* AT5G17040.1) (62 letters) ***** No hits found ****** Query= Solyc00g005090.1.1 LOW QUALITY:DYNAMIN-like 1B (AHRD V3.3 --* AT3G61760.3) (94 letters) ***** No hits found ****** Query= Solyc00g005092.1.1 Serine/threonine phosphatase-like protein (AHRD V3.3 --* D5K8R0_9ASTR) (73 letters) ***** No hits found ****** Query= Solyc00g005094.1.1 Glucose-6-phosphate 1-dehydrogenase 3, chloroplastic (AHRD V3.3 --* G6PD3_ARATH) (79 letters) ***** No hits found ****** Query= Solyc00g005096.1.1 RWP-RK domain-containing protein (AHRD V3.3 *-* AT1G18790.1) (268 letters) Score E Sequences producing significant alignments: (bits) Value gnl|CDD|307938 pfam02042, RWP-RK, RWP-RK domain. This domain is... 79 3e-16 >gnl|CDD|307938 pfam02042, RWP-RK, RWP-RK domain. This domain is named RWP-RK after a conserved motif at the C terminus of the presumed domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development. Length = 49 Score = 79.5 bits (197), Expect = 3e-16 Identities = 27/48 (56%), Positives = 37/48 (77%) Query: 102 LSRDAISKYFYIPIIQASKELHIGLTHLKKRCRNLGIRRWPCRKLMSL 149 L+ + +S+YF++PI +A+KEL + LT LK+ CR LGI RWP RKL SL Sbjct: 2 LTLEDLSQYFHLPIKEAAKELGVCLTVLKRICRRLGIPRWPYRKLKSL 49 Query= Solyc00g005280.1.1 LOW QUALITY:Retrotransposon protein, putative, unclassified (AHRD V3.3 --* Q2RAW3_ORYSJ) (136 letters) ***** No hits found ****** Query= Solyc00g005283.1.1 Phytoene desaturase (AHRD V3.3 --* I0AXU6_NARTA) (75 letters) ***** No hits found ****** Query= Solyc00g005285.1.1 O-methyltransferase (AHRD V3.3 *-* F6M2M1_VITPS) (161 letters) Score E Sequences producing significant alignments: (bits) Value gnl|CDD|307169 pfam00891, Methyltransf_2, O-methyltransferase. ... 66 2e-12 >gnl|CDD|307169 pfam00891, Methyltransf_2, O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine. Length = 225 Score = 65.9 bits (161), Expect = 2e-12 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 11/112 (9%) Query: 50 TLVDDTRTVAKTISNVVEGLEGGNNLKYIGGDMYK-SVPSAHAIL--NVLHDWSDEDFVK 106 T+ D V ++ EG E + ++GGD +K S+P A AI+ VLHDWSD VK Sbjct: 100 TVFDLPHVVQAAPTHFSEGEEPR--VTFVGGDFFKDSLPEADAIILKRVLHDWSDGHCVK 157 Query: 107 ILKKCTEAIPSKENGGKVIDIDIKIDNAKRDNKSFKTQLFSDVLVLFRVSGK 158 +LK C +A+P+ GGKVI ++ + TQL D+ +L + G+ Sbjct: 158 LLKNCYKALPA---GGKVIVVEALLGADPSGPL--TTQLV-DLNMLAQNEGR 203 Query= Solyc00g005287.1.1 3-oxoacyl-[acyl-carrier-protein] synthase (AHRD V3.3 *-* W9S6R3_9ROSA) (122 letters) ***** No hits found ****** Query= Solyc00g005430.1.1 UBX domain-containing protein (AHRD V3.3 --* AT1G14570.4) (54 letters) ***** No hits found ****** Query= Solyc00g005440.2.1 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) (125 letters) ***** No hits found ****** Query= Solyc00g005445.1.1 Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V3.3 --* AT3G23470.3) (142 letters) ***** No hits found ****** Query= Solyc00g005450.1.1 LOW QUALITY:Cysteine-rich repeat secretory protein 38 (AHRD V3.3 --* CRR38_ARATH) (87 letters) ***** No hits found ****** Query= Solyc00g005460.2.1 40S ribosomal protein S9, putative (AHRD V3.3 *-* Q60CZ2_SOLDE) (87 letters) ***** No hits found ****** Query= Solyc00g005470.2.1 40S ribosomal protein S9, putative (AHRD V3.3 *-* Q60CZ2_SOLDE) (71 letters) ***** No hits found ****** Query= Solyc00g005480.1.1 LOW QUALITY:SUMO-conjugating enzyme SCE1 (AHRD V3.3 *-* A0A1D1XHL9_9ARAE) (121 letters) ***** No hits found ****** Query= Solyc00g005840.3.1 Thioredoxin, putative (AHRD V3.3 *** B9RK57_RICCO) (232 letters) Score E Sequences producing significant alignments: (bits) Value gnl|CDD|278513 pfam00085, Thioredoxin, Thioredoxin. Thioredoxin... 75 4e-15 >gnl|CDD|278513 pfam00085, Thioredoxin, Thioredoxin. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104 Score = 75.3 bits (186), Expect = 4e-15 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 96 IHSTQEFLEALSQAGDRLVIVEFYGSWCASCKALFPKFCRTAQEHPE-ILFLKVNFDANK 154 + + + F E +++A D+ V+V+FY WC CK L P++ + AQE+ + + F KV+ D N Sbjct: 4 VLTDENFDEEVAKA-DKPVLVDFYAPWCGHCKMLAPEYEKLAQEYKDNVKFAKVDVDENP 62 Query: 155 SMCKALNVKVLPYFHFYRGAD 175 + V+ +P ++ Sbjct: 63 DLASKYGVRGIPTLKLFKNGK 83 Query= Solyc00g005850.2.1 LOW QUALITY:Protein TIC 214 (AHRD V3.3 --* TI214_EPIVI) (91 letters) ***** No hits found ****** Query= Solyc00g005890.3.1 Leucine-rich repeat (LRR) family protein (AHRD V3.3 --* AT3G19020.2) (54 letters) ***** No hits found ****** Query= Solyc00g005900.2.1 Oxygen-evolving enhancer protein 1 (AHRD V3.3 *-* A0A0A0KI32_CUCSA) (96 letters) Score E Sequences producing significant alignments: (bits) Value gnl|CDD|307713 pfam01716, MSP, Manganese-stabilizing protein / p... 57 6e-10 >gnl|CDD|307713 pfam01716, MSP, Manganese-stabilizing protein / photosystem II polypeptide. This family consists of the 33 KDa photosystem II polypeptide from the oxygen evolving complex (OEC) of plants and cyanobacteria. The protein is also known as the manganese-stabilizing protein as it is associated with the manganese complex of the OEC and may provide the ligands for the complex. Length = 240 Score = 56.9 bits (138), Expect = 6e-10 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 39 TYIEVKGTGAANQCPTI-DGGVDNFSFKLGK-YNAKKFYLETTPFIVKEEGVSKNSALEF 96 TY ++KGTG AN+CPT+ + + S G Y LE T F VKEE +K EF Sbjct: 3 TYDQIKGTGLANKCPTLSETARGSISIDPGGSYKLTDLCLEPTEFFVKEEPANKRQEAEF 62 Query= Solyc00g006020.1.1 LOW QUALITY:Zinc knuckle (CCHC-type) family protein (AHRD V3.3 --* AT2G07760.1) (105 letters) ***** No hits found ******