pfam00004 74 AAA ATPase family associated with various cellular pfam00005 65 ABC_tran ABC transporter pfam00006 14 ATP-synt_ab ATP synthase alpha/beta family pfam00009 26 GTP_EFTU Elongation factor Tu GTP binding domain pfam00010 82 HLH Helix-loop-helix DNA-binding domain pfam00011 34 HSP20 Hsp20/alpha crystallin family pfam00012 27 HSP70 Hsp70 protein pfam00013 31 KH_1 KH domain pfam00016 7 RuBisCO_large Ribulose bisphosphate carboxylase large pfam00022 35 Actin Actin pfam00025 24 Arf ADP-ribosylation factor family pfam00026 6 Asp Eukaryotic aspartyl protease pfam00027 9 cNMP_binding Cyclic nucleotide-binding domain pfam00031 1 Cystatin Cystatin domain pfam00032 3 Cytochrom_B_C Cytochrome b(C-terminal)/b6/petD pfam00033 4 Cytochrome_B Cytochrome b/b6/petB pfam00034 2 Cytochrom_C Cytochrome c pfam00035 11 dsrm Double-stranded RNA binding motif pfam00042 2 Globin Globin pfam00043 3 GST_C Glutathione S-transferase pfam00044 2 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase pfam00046 53 Homeobox Homeobox domain pfam00056 8 Ldh_1_N lactate/malate dehydrogenase pfam00060 8 Lig_chan Ligand-gated ion channel pfam00061 1 Lipocalin Lipocalin / cytosolic fatty-acid binding pfam00063 19 Myosin_head Myosin head (motor domain) pfam00067 337 p450 Cytochrome P450 pfam00069 631 Pkinase Protein kinase domain pfam00071 73 Ras Ras family pfam00072 36 Response_reg Response regulator receiver domain pfam00076 179 RRM_1 RNA recognition motif pfam00078 24 RVT_1 Reverse transcriptase (RNA-dependent DNA pfam00079 10 Serpin Serpin (serine protease inhibitor) pfam00080 4 Sod_Cu Copper/zinc superoxide dismutase (SODC) pfam00082 71 Peptidase_S8 Subtilase family pfam00083 73 Sugar_tr Sugar (and other) transporter pfam00085 50 Thioredoxin Thioredoxin pfam00091 23 Tubulin Tubulin/FtsZ family pfam00097 7 zf-C3HC4 Zinc finger pfam00101 4 RuBisCO_small Ribulose bisphosphate carboxylase pfam00102 2 Y_phosphatase Protein-tyrosine phosphatase pfam00106 65 adh_short short chain dehydrogenase pfam00107 20 ADH_zinc_N Zinc-binding dehydrogenase pfam00108 5 Thiolase_N Thiolase pfam00109 6 ketoacyl-synt Beta-ketoacyl synthase pfam00111 11 Fer2 2Fe-2S iron-sulfur cluster binding domain pfam00112 39 Peptidase_C1 Papain family cysteine protease pfam00113 7 Enolase_C Enolase pfam00115 6 COX1 Cytochrome C and Quinol oxidase polypeptide I pfam00116 11 COX2 Cytochrome C oxidase subunit II pfam00117 7 GATase Glutamine amidotransferase class-I pfam00118 26 Cpn60_TCP1 TCP-1/cpn60 chaperonin family pfam00119 5 ATP-synt_A ATP synthase A chain pfam00120 10 Gln-synt_C Glutamine synthetase pfam00121 4 TIM Triosephosphate isomerase pfam00122 25 E1-E2_ATPase E1-E2 ATPase pfam00124 13 Photo_RC Photosynthetic reaction centre protein pfam00125 46 Histone Core histone H2A/H2B/H3/H4 pfam00126 2 HTH_1 Bacterial regulatory helix-turn-helix protein pfam00127 1 Copper-bind Copper binding proteins pfam00133 8 tRNA-synt_1 tRNA synthetases class I (I pfam00134 45 Cyclin_N Cyclin pfam00135 1 COesterase Carboxylesterase family pfam00136 3 DNA_pol_B DNA polymerase family B pfam00137 7 ATP-synt_C ATP synthase subunit C pfam00139 31 Lectin_legB Legume lectin domain pfam00141 123 peroxidase Peroxidase pfam00144 1 Beta-lactamase Beta-lactamase pfam00145 8 DNA_methylase C-5 cytosine-specific DNA methylase pfam00146 10 NADHdh NADH dehydrogenase pfam00149 16 Metallophos Calcineurin-like phosphoesterase pfam00150 11 Cellulase Cellulase (glycosyl hydrolase family 5) pfam00152 8 tRNA-synt_2 tRNA synthetases class II (D pfam00153 61 Mito_carr Mitochondrial carrier protein pfam00154 3 RecA recA bacterial DNA recombination protein pfam00155 49 Aminotran_1_2 Aminotransferase class I and II pfam00156 6 Pribosyltran Phosphoribosyl transferase domain pfam00160 31 Pro_isomerase Cyclophilin type peptidyl-prolyl pfam00162 3 PGK Phosphoglycerate kinase pfam00163 1 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal pfam00164 9 Ribosom_S12_S23 Ribosomal protein S12/S23 pfam00166 6 Cpn10 Chaperonin 10 Kd subunit pfam00168 57 C2 C2 domain pfam00169 2 PH PH domain pfam00170 32 bZIP_1 bZIP transcription factor pfam00171 21 Aldedh Aldehyde dehydrogenase family pfam00173 19 Cyt-b5 Cytochrome b5-like Heme/Steroid binding pfam00174 2 Oxidored_molyb Oxidoreductase molybdopterin binding pfam00175 5 NAD_binding_1 Oxidoreductase NAD-binding domain pfam00176 61 SNF2_N SNF2 family N-terminal domain pfam00177 12 Ribosomal_S7 Ribosomal protein S7p/S5e pfam00179 60 UQ_con Ubiquitin-conjugating enzyme pfam00180 8 Iso_dh Isocitrate/isopropylmalate dehydrogenase pfam00181 3 Ribosomal_L2 Ribosomal Proteins L2 pfam00182 19 Glyco_hydro_19 Chitinase class I pfam00183 8 HSP90 Hsp90 protein pfam00185 2 OTCace Aspartate/ornithine carbamoyltransferase pfam00187 11 Chitin_bind_1 Chitin recognition protein pfam00188 13 CAP Cysteine-rich secretory protein family pfam00189 6 Ribosomal_S3_C Ribosomal protein S3 pfam00190 54 Cupin_1 Cupin pfam00191 11 Annexin Annexin pfam00194 10 Carb_anhydrase Eukaryotic-type carbonic anhydrase pfam00195 7 Chal_sti_synt_N Chalcone and stilbene synthases pfam00197 16 Kunitz_legume Trypsin and protease inhibitor pfam00198 7 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase pfam00199 6 Catalase Catalase pfam00201 169 UDPGT UDP-glucoronosyl and UDP-glucosyl transferase pfam00202 10 Aminotran_3 Aminotransferase class-III pfam00203 5 Ribosomal_S19 Ribosomal protein S19 pfam00204 1 DNA_gyraseB DNA gyrase B pfam00206 4 Lyase_1 Lyase pfam00208 5 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine pfam00210 2 Ferritin Ferritin-like domain pfam00213 3 OSCP ATP synthase delta (OSCP) subunit pfam00215 1 OMPdecase Orotidine 5'-phosphate decarboxylase / HUMPS pfam00218 1 IGPS Indole-3-glycerol phosphate synthase pfam00221 16 Lyase_aromatic Aromatic amino acid lyase pfam00223 40 PsaA_PsaB Photosystem I psaA/psaB protein pfam00224 10 PK Pyruvate kinase pfam00225 65 Kinesin Kinesin motor domain pfam00226 65 DnaJ DnaJ domain pfam00227 21 Proteasome Proteasome subunit pfam00230 47 MIP Major intrinsic protein pfam00231 4 ATP-synt ATP synthase pfam00232 25 Glyco_hydro_1 Glycosyl hydrolase family 1 pfam00234 27 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP pfam00235 7 Profilin Profilin pfam00237 5 Ribosomal_L22 Ribosomal protein L22p/L17e pfam00238 6 Ribosomal_L14 Ribosomal protein L14p/L23e pfam00240 37 ubiquitin Ubiquitin family pfam00241 9 Cofilin_ADF Cofilin/tropomyosin-type actin-binding pfam00244 13 14-3-3 14-3-3 protein pfam00246 2 Peptidase_M14 Zinc carboxypeptidase pfam00248 32 Aldo_ket_red Aldo/keto reductase family pfam00249 178 Myb_DNA-binding Myb-like DNA-binding domain pfam00251 12 Glyco_hydro_32N Glycosyl hydrolases family 32 pfam00252 10 Ribosomal_L16 Ribosomal protein L16p/L10e pfam00253 3 Ribosomal_S14 Ribosomal protein S14p/S29e pfam00254 21 FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase pfam00255 7 GSHPx Glutathione peroxidase pfam00257 8 Dehydrin Dehydrin pfam00258 1 Flavodoxin_1 Flavodoxin pfam00262 5 Calreticulin Calreticulin family pfam00264 2 Tyrosinase Common central domain of tyrosinase pfam00265 2 TK Thymidine kinase pfam00266 10 Aminotran_5 Aminotransferase class-V pfam00268 2 Ribonuc_red_sm Ribonucleotide reductase pfam00270 66 DEAD DEAD/DEAH box helicase pfam00271 22 Helicase_C Helicase conserved C-terminal domain pfam00274 10 Glycolytic Fructose-bisphosphate aldolase class-I pfam00275 8 EPSP_synthase EPSP synthase (3-phosphoshikimate pfam00276 4 Ribosomal_L23 Ribosomal protein L23 pfam00280 23 potato_inhibit Potato inhibitor I family pfam00281 1 Ribosomal_L5 Ribosomal protein L5 pfam00282 29 Pyridoxal_deC Pyridoxal-dependent decarboxylase pfam00285 3 Citrate_synt Citrate synthase pfam00288 8 GHMP_kinases_N GHMP kinases N terminal domain pfam00290 1 Trp_syntA Tryptophan synthase alpha chain pfam00291 24 PALP Pyridoxal-phosphate dependent enzyme pfam00293 29 NUDIX NUDIX domain pfam00294 17 PfkB pfkB family carbohydrate kinase pfam00295 55 Glyco_hydro_28 Glycosyl hydrolases family 28 pfam00297 5 Ribosomal_L3 Ribosomal protein L3 pfam00298 5 Ribosomal_L11 Ribosomal protein L11 pfam00300 16 His_Phos_1 Histidine phosphatase superfamily (branch pfam00301 2 Rubredoxin Rubredoxin pfam00303 1 Thymidylat_synt Thymidylate synthase pfam00304 16 Gamma-thionin Gamma-thionin family pfam00305 31 Lipoxygenase Lipoxygenase pfam00307 5 CH Calponin homology (CH) domain pfam00310 2 GATase_2 Glutamine amidotransferases class-II pfam00311 8 PEPcase Phosphoenolpyruvate carboxylase pfam00312 1 Ribosomal_S15 Ribosomal protein S15 pfam00313 3 CSD 'Cold-shock' DNA-binding domain pfam00314 36 Thaumatin Thaumatin family pfam00316 7 FBPase Fructose-1-6-bisphosphatase pfam00318 9 Ribosomal_S2 Ribosomal protein S2 pfam00319 109 SRF-TF SRF-type transcription factor (DNA-binding and pfam00320 29 GATA GATA zinc finger pfam00324 2 AA_permease Amino acid permease pfam00326 11 Peptidase_S9 Prolyl oligopeptidase family pfam00327 3 Ribosomal_L30 Ribosomal protein L30p/L7e pfam00328 5 His_Phos_2 Histidine phosphatase superfamily (branch pfam00329 8 Complex1_30kDa Respiratory-chain NADH dehydrogenase pfam00330 4 Aconitase Aconitase family (aconitate hydratase) pfam00331 11 Glyco_hydro_10 Glycosyl hydrolase family 10 pfam00332 51 Glyco_hydro_17 Glycosyl hydrolases family 17 pfam00333 2 Ribosomal_S5 Ribosomal protein S5 pfam00334 8 NDK Nucleoside diphosphate kinase pfam00335 15 Tetraspannin Tetraspanin family pfam00337 5 Gal-bind_lectin Galactoside-binding lectin pfam00338 5 Ribosomal_S10 Ribosomal protein S10p/S20e pfam00342 2 PGI Phosphoglucose isomerase pfam00343 4 Phosphorylase Carbohydrate phosphorylase pfam00344 4 SecY SecY translocase pfam00346 22 Complex1_49kDa Respiratory-chain NADH dehydrogenase pfam00347 5 Ribosomal_L6 Ribosomal protein L6 pfam00348 12 polyprenyl_synt Polyprenyl synthetase pfam00350 9 Dynamin_N Dynamin family pfam00352 2 TBP Transcription factor TFIID (or TATA-binding pfam00355 5 Rieske Rieske [2Fe-2S] domain pfam00360 5 PHY Phytochrome region pfam00361 33 Proton_antipo_M Proton-conducting membrane transporter pfam00364 2 Biotin_lipoyl Biotin-requiring enzyme pfam00365 13 PFK Phosphofructokinase pfam00366 2 Ribosomal_S17 Ribosomal protein S17 pfam00368 4 HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase pfam00370 3 FGGY_N FGGY family of carbohydrate kinases pfam00378 8 ECH_1 Enoyl-CoA hydratase/isomerase pfam00380 6 Ribosomal_S9 Ribosomal protein S9/S16 pfam00382 3 TFIIB Transcription factor TFIIB repeat pfam00383 4 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase pfam00384 1 Molybdopterin Molybdopterin oxidoreductase pfam00385 2 Chromo Chromo (CHRromatin Organisation MOdifier) pfam00388 7 PI-PLC-X Phosphatidylinositol-specific phospholipase C pfam00389 10 2-Hacid_dh D-isomer specific 2-hydroxyacid pfam00393 4 6PGD 6-phosphogluconate dehydrogenase pfam00394 13 Cu-oxidase Multicopper oxidase pfam00398 3 RrnaAD Ribosomal RNA adenine dimethylase pfam00400 43 WD40 WD domain pfam00403 33 HMA Heavy-metal-associated domain pfam00406 11 ADK Adenylate kinase pfam00407 54 Bet_v_1 Pathogenesis-related protein Bet v I family pfam00410 4 Ribosomal_S8 Ribosomal protein S8 pfam00411 7 Ribosomal_S11 Ribosomal protein S11 pfam00412 12 LIM LIM domain pfam00413 5 Peptidase_M10 Matrixin pfam00415 17 RCC1 Regulator of chromosome condensation (RCC1) pfam00416 6 Ribosomal_S13 Ribosomal protein S13/S18 pfam00421 17 PSII Photosystem II protein pfam00425 4 Chorismate_bind chorismate binding enzyme pfam00428 9 Ribosomal_60s 60s Acidic ribosomal protein pfam00430 4 ATP-synt_B ATP synthase B/B' CF(0) pfam00432 5 Prenyltrans Prenyltransferase and squalene oxidase pfam00436 4 SSB Single-strand binding protein family pfam00439 15 Bromodomain Bromodomain pfam00441 2 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase pfam00443 34 UCH Ubiquitin carboxyl-terminal hydrolase pfam00444 1 Ribosomal_L36 Ribosomal protein L36 pfam00445 11 Ribonuclease_T2 Ribonuclease T2 family pfam00447 26 HSF_DNA-bind HSF-type DNA-binding pfam00448 5 SRP54 SRP54-type protein pfam00450 63 Peptidase_S10 Serine carboxypeptidase pfam00453 7 Ribosomal_L20 Ribosomal protein L20 pfam00454 14 PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase pfam00456 3 Transketolase_N Transketolase pfam00459 11 Inositol_P Inositol monophosphatase family pfam00462 48 Glutaredoxin Glutaredoxin pfam00463 1 ICL Isocitrate lyase family pfam00464 7 SHMT Serine hydroxymethyltransferase pfam00466 3 Ribosomal_L10 Ribosomal protein L10 pfam00468 2 Ribosomal_L34 Ribosomal protein L34 pfam00471 3 Ribosomal_L33 Ribosomal protein L33 pfam00472 3 RF-1 RF-1 domain pfam00474 1 SSF Sodium:solute symporter family pfam00475 1 IGPD Imidazoleglycerol-phosphate dehydratase pfam00476 2 DNA_pol_A DNA polymerase family A pfam00477 2 LEA_5 Small hydrophilic plant seed protein pfam00478 1 IMPDH IMP dehydrogenase / GMP reductase domain pfam00481 91 PP2C Protein phosphatase 2C pfam00483 11 NTP_transferase Nucleotidyl transferase pfam00484 4 Pro_CA Carbonic anhydrase pfam00485 6 PRK Phosphoribulokinase / Uridine kinase family pfam00487 11 FA_desaturase Fatty acid desaturase pfam00488 9 MutS_V MutS domain V pfam00490 1 ALAD Delta-aminolevulinic acid dehydratase pfam00491 2 Arginase Arginase family pfam00493 8 MCM MCM2/3/5 family pfam00494 8 SQS_PSY Squalene/phytoene synthase pfam00498 6 FHA FHA domain pfam00499 4 Oxidored_q3 NADH-ubiquinone/plastoquinone pfam00501 60 AMP-binding AMP-binding enzyme pfam00503 6 G-alpha G-protein alpha subunit pfam00504 36 Chloroa_b-bind Chlorophyll A-B binding protein pfam00505 5 HMG_box HMG (high mobility group) box pfam00507 2 Oxidored_q4 NADH-ubiquinone/plastoquinone pfam00510 3 COX3 Cytochrome c oxidase subunit III pfam00515 1 TPR_1 Tetratricopeptide repeat pfam00520 23 Ion_trans Ion transport protein pfam00521 2 DNA_topoisoIV DNA gyrase/topoisomerase IV pfam00533 2 BRCT BRCA1 C Terminus (BRCT) domain pfam00534 11 Glycos_transf_1 Glycosyl transferases group 1 pfam00535 4 Glycos_transf_2 Glycosyl transferase family 2 pfam00536 4 SAM_1 SAM domain (Sterile alpha motif) pfam00538 13 Linker_histone linker histone H1 and H5 family pfam00542 7 Ribosomal_L12 Ribosomal protein L7/L12 C-terminal pfam00543 2 P-II Nitrogen regulatory protein P-II pfam00544 19 Pec_lyase_C Pectate lyase pfam00549 4 Ligase_CoA CoA-ligase pfam00550 8 PP-binding Phosphopantetheine attachment site pfam00551 4 Formyl_trans_N Formyl transferase pfam00557 7 Peptidase_M24 Metallopeptidase family M24 pfam00561 84 Abhydrolase_1 alpha/beta hydrolase fold pfam00562 10 RNA_pol_Rpb2_6 RNA polymerase Rpb2 pfam00564 21 PB1 PB1 domain pfam00565 1 SNase Staphylococcal nuclease homolog pfam00566 22 RabGAP-TBC Rab-GTPase-TBC domain pfam00567 2 TUDOR Tudor domain pfam00571 9 CBS CBS domain pfam00572 6 Ribosomal_L13 Ribosomal protein L13 pfam00573 5 Ribosomal_L4 Ribosomal protein L4/L1 family pfam00574 10 CLP_protease Clp protease pfam00575 6 S1 S1 RNA binding domain pfam00576 1 Transthyretin HIUase/Transthyretin family pfam00578 5 AhpC-TSA AhpC/TSA family pfam00579 4 tRNA-synt_1b tRNA synthetases class I (W and Y) pfam00580 1 UvrD-helicase UvrD/REP helicase N-terminal domain pfam00581 11 Rhodanese Rhodanese-like domain pfam00582 29 Usp Universal stress protein family pfam00583 25 Acetyltransf_1 Acetyltransferase (GNAT) family pfam00584 2 SecE SecE/Sec61-gamma subunits of protein pfam00585 1 Thr_dehydrat_C C-terminal regulatory domain of pfam00586 1 AIRS AIR synthase related protein pfam00587 6 tRNA-synt_2b tRNA synthetase class II core domain (G pfam00588 8 SpoU_methylase SpoU rRNA Methylase family pfam00589 1 Phage_integrase Phage integrase family pfam00590 3 TP_methylase Tetrapyrrole (Corrin/Porphyrin) pfam00591 3 Glycos_transf_3 Glycosyl transferase family pfam00593 1 TonB_dep_Rec TonB dependent receptor pfam00595 1 PDZ PDZ domain (Also known as DHR or GLGF) pfam00596 2 Aldolase_II Class II Aldolase and Adducin N-terminal pfam00609 8 DAGK_acc Diacylglycerol kinase accessory domain pfam00610 2 DEP Domain found in Dishevelled pfam00613 1 PI3Ka Phosphoinositide 3-kinase family pfam00615 1 RGS Regulator of G protein signaling domain pfam00620 9 RhoGAP RhoGAP domain pfam00622 3 SPRY SPRY domain pfam00623 6 RNA_pol_Rpb1_2 RNA polymerase Rpb1 pfam00625 3 Guanylate_kin Guanylate kinase pfam00626 3 Gelsolin Gelsolin repeat pfam00627 1 UBA UBA/TS-N domain pfam00628 15 PHD PHD-finger pfam00630 1 Filamin Filamin/ABP280 repeat pfam00631 1 G-gamma GGL domain pfam00632 17 HECT HECT-domain (ubiquitin-transferase) pfam00635 13 Motile_Sperm MSP (Major sperm protein) domain pfam00636 13 Ribonuclease_3 Ribonuclease III domain pfam00637 2 Clathrin Region in Clathrin and VPS pfam00638 3 Ran_BP1 RanBP1 domain pfam00639 4 Rotamase PPIC-type PPIASE domain pfam00642 12 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and pfam00644 7 PARP Poly(ADP-ribose) polymerase catalytic domain pfam00646 24 F-box F-box domain pfam00647 2 EF1G Elongation factor 1 gamma pfam00648 1 Peptidase_C2 Calpain family cysteine protease pfam00650 32 CRAL_TRIO CRAL/TRIO domain pfam00651 20 BTB BTB/POZ domain pfam00654 10 Voltage_CLC Voltage gated chloride channel pfam00656 8 Peptidase_C14 Caspase domain pfam00657 83 Lipase_GDSL GDSL-like Lipase/Acylhydrolase pfam00658 5 PABP Poly-adenylate binding protein pfam00662 5 Proton_antipo_N NADH-Ubiquinone oxidoreductase (complex pfam00664 29 ABC_membrane ABC transporter transmembrane region pfam00667 3 FAD_binding_1 FAD binding domain pfam00673 4 Ribosomal_L5_C ribosomal L5P family C-terminus pfam00675 6 Peptidase_M16 Insulinase (Peptidase family M16) pfam00676 13 E1_dh Dehydrogenase E1 component pfam00677 1 Lum_binding Lumazine binding domain pfam00682 8 HMGL-like HMGL-like pfam00685 38 Sulfotransfer_1 Sulfotransferase domain pfam00686 1 CBM_20 Starch binding domain pfam00687 6 Ribosomal_L1 Ribosomal protein L1p/L10e family pfam00689 14 Cation_ATPase_C Cation transporting ATPase pfam00690 1 Cation_ATPase_N Cation transporter/ATPase pfam00692 3 dUTPase dUTPase pfam00694 1 Aconitase_C Aconitase C-terminal domain pfam00696 9 AA_kinase Amino acid kinase family pfam00697 2 PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase pfam00698 1 Acyl_transf_1 Acyl transferase domain pfam00701 2 DHDPS Dihydrodipicolinate synthetase family pfam00702 14 Hydrolase haloacid dehalogenase-like hydrolase pfam00703 1 Glyco_hydro_2 Glycosyl hydrolases family 2 pfam00704 14 Glyco_hydro_18 Glycosyl hydrolases family 18 pfam00708 1 Acylphosphatase Acylphosphatase pfam00709 2 Adenylsucc_synt Adenylosuccinate synthetase pfam00717 2 Peptidase_S24 Peptidase S24-like pfam00719 7 Pyrophosphatase Inorganic pyrophosphatase pfam00722 38 Glyco_hydro_16 Glycosyl hydrolases family 16 pfam00724 12 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase pfam00728 3 Glyco_hydro_20 Glycosyl hydrolase family 20 pfam00730 6 HhH-GPD HhH-GPD superfamily base excision DNA repair pfam00731 2 AIRC AIR carboxylase pfam00732 7 GMC_oxred_N GMC oxidoreductase pfam00733 2 Asn_synthase Asparagine synthase pfam00736 3 EF1_GNE EF-1 guanine nucleotide exchange domain pfam00737 1 PsbH Photosystem II 10 kDa phosphoprotein pfam00742 4 Homoserine_dh Homoserine dehydrogenase pfam00743 20 FMO-like Flavin-binding monooxygenase-like pfam00749 3 tRNA-synt_1c tRNA synthetases class I (E and Q) pfam00750 1 tRNA-synt_1d tRNA synthetases class I (R) pfam00752 1 XPG_N XPG N-terminal domain pfam00753 3 Lactamase_B Metallo-beta-lactamase superfamily pfam00756 1 Esterase Putative esterase pfam00759 24 Glyco_hydro_9 Glycosyl hydrolase family 9 pfam00762 6 Ferrochelatase Ferrochelatase pfam00764 1 Arginosuc_synth Arginosuccinate synthase pfam00766 1 ETF_alpha Electron transfer flavoprotein FAD-binding pfam00773 4 RNB RNB domain pfam00777 3 Glyco_transf_29 Glycosyltransferase family 29 pfam00781 5 DAGK_cat Diacylglycerol kinase catalytic domain pfam00782 14 DSPc Dual specificity phosphatase pfam00786 2 PBD P21-Rho-binding domain pfam00787 4 PX PX domain pfam00789 5 UBX UBX domain pfam00790 6 VHS VHS domain pfam00793 1 DAHP_synth_1 DAHP synthetase I family pfam00795 7 CN_hydrolase Carbon-nitrogen hydrolase pfam00800 4 PDT Prephenate dehydratase pfam00804 11 Syntaxin Syntaxin pfam00805 1 Pentapeptide Pentapeptide repeats (8 copies) pfam00806 1 PUF Pumilio-family RNA binding repeat pfam00808 47 CBFD_NFYB_HMF Histone-like transcription factor pfam00809 1 Pterin_bind Pterin binding enzyme pfam00810 8 ER_lumen_recept ER lumen protein retaining receptor pfam00814 2 Peptidase_M22 Glycoprotease family pfam00815 1 Histidinol_dh Histidinol dehydrogenase pfam00817 3 IMS impB/mucB/samB family pfam00827 4 Ribosomal_L15e Ribosomal L15 pfam00828 4 Ribosomal_L27A Ribosomal proteins 50S-L15 pfam00829 3 Ribosomal_L21p Ribosomal prokaryotic L21 protein pfam00830 3 Ribosomal_L28 Ribosomal L28 family pfam00831 5 Ribosomal_L29 Ribosomal L29 protein pfam00832 2 Ribosomal_L39 Ribosomal L39 protein pfam00833 3 Ribosomal_S17e Ribosomal S17 pfam00834 2 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family pfam00838 2 TCTP Translationally controlled tumor protein pfam00847 137 AP2 AP2 domain pfam00848 2 Ring_hydroxyl_A Ring hydroxylating alpha subunit pfam00849 7 PseudoU_synth_2 RNA pseudouridylate synthase pfam00850 9 Hist_deacetyl Histone deacetylase domain pfam00852 3 Glyco_transf_10 Glycosyltransferase family 10 pfam00854 86 PTR2 POT family pfam00855 10 PWWP PWWP domain pfam00856 23 SET SET domain pfam00857 4 Isochorismatase Isochorismatase family pfam00860 15 Xan_ur_permease Permease family pfam00861 4 Ribosomal_L18p Ribosomal L18 of archaea pfam00862 7 Sucrose_synth Sucrose synthase pfam00867 5 XPG_I XPG I-region pfam00875 2 DNA_photolyase DNA photolyase pfam00883 5 Peptidase_M17 Cytosol aminopeptidase family pfam00885 2 DMRL_synthase 6 pfam00886 1 Ribosomal_S16 Ribosomal protein S16 pfam00887 4 ACBP Acyl CoA binding protein pfam00888 20 Cullin Cullin family pfam00889 2 EF_TS Elongation factor TS pfam00890 3 FAD_binding_2 FAD binding domain pfam00891 26 Methyltransf_2 O-methyltransferase pfam00892 40 EamA EamA-like transporter family pfam00899 8 ThiF ThiF family pfam00900 4 Ribosomal_S4e Ribosomal family S4e pfam00902 3 TatC Sec-independent protein translocase protein pfam00903 13 Glyoxalase Glyoxalase/Bleomycin resistance pfam00905 1 Transpeptidase Penicillin binding protein pfam00909 8 Ammonium_transp Ammonium Transporter Family pfam00912 1 Transgly Transglycosylase pfam00916 15 Sulfate_transp Sulfate permease family pfam00917 4 MATH MATH domain pfam00919 2 UPF0004 Uncharacterized protein family UPF0004 pfam00920 2 ILVD_EDD Dehydratase family pfam00923 1 TAL_FSA Transaldolase/Fructose-6-phosphate aldolase pfam00924 8 MS_channel Mechanosensitive ion channel pfam00926 3 DHBP_synthase 3 pfam00928 12 Adap_comp_sub Adaptor complexes medium subunit family pfam00929 14 RNase_T Exonuclease pfam00930 1 DPPIV_N Dipeptidyl peptidase IV (DPP IV) N-terminal pfam00931 217 NB-ARC NB-ARC domain pfam00933 10 Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal pfam00935 3 Ribosomal_L44 Ribosomal protein L44 pfam00939 5 Na_sulph_symp Sodium:sulfate symporter transmembrane pfam00940 2 RNA_pol DNA-dependent RNA polymerase pfam00941 1 FAD_binding_5 FAD binding domain in molybdopterin pfam00953 2 Glycos_transf_4 Glycosyl transferase family 4 pfam00954 4 S_locus_glycop S-locus glycoprotein domain pfam00955 6 HCO3_cotransp HCO3- transporter family pfam00956 9 NAP Nucleosome assembly protein (NAP) pfam00957 9 Synaptobrevin Synaptobrevin pfam00958 1 GMP_synt_C GMP synthase C terminal domain pfam00962 4 A_deaminase Adenosine/AMP deaminase pfam00967 3 Barwin Barwin family pfam00970 1 FAD_binding_6 Oxidoreductase FAD-binding domain pfam00977 2 His_biosynth Histidine biosynthesis protein pfam00982 12 Glyco_transf_20 Glycosyltransferase family 20 pfam00988 1 CPSase_sm_chain Carbamoyl-phosphate synthase small pfam00995 8 Sec1 Sec1 family pfam00996 4 GDI GDP dissociation inhibitor pfam00999 34 Na_H_Exchanger Sodium/hydrogen exchanger family pfam01008 7 IF-2B Initiation factor 2 subunit family pfam01010 7 Proton_antipo_C NADH-dehyrogenase subunit F pfam01012 1 ETF Electron transfer flavoprotein domain pfam01014 1 Uricase Uricase pfam01015 3 Ribosomal_S3Ae Ribosomal S3Ae family pfam01016 3 Ribosomal_L27 Ribosomal L27 protein pfam01018 3 GTP1_OBG GTP1/OBG pfam01019 2 G_glu_transpept Gamma-glutamyltranspeptidase pfam01020 1 Ribosomal_L40e Ribosomal L40e family pfam01025 4 GrpE GrpE pfam01026 2 TatD_DNase TatD related DNase pfam01027 7 Bax1-I Inhibitor of apoptosis-promoting Bax1 pfam01029 1 NusB NusB family pfam01031 13 Dynamin_M Dynamin central region pfam01039 4 Carboxyl_trans Carboxyl transferase domain pfam01040 7 UbiA UbiA prenyltransferase family pfam01042 2 Ribonuc_L-PSP Endoribonuclease L-PSP pfam01047 1 MarR MarR family pfam01048 5 PNP_UDP_1 Phosphorylase superfamily pfam01053 7 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent pfam01055 8 Glyco_hydro_31 Glycosyl hydrolases family 31 pfam01058 3 Oxidored_q6 NADH ubiquinone oxidoreductase pfam01061 60 ABC2_membrane ABC-2 type transporter pfam01062 2 Bestrophin Bestrophin pfam01063 8 Aminotran_4 Amino-transferase class IV pfam01066 3 CDP-OH_P_transf CDP-alcohol phosphatidyltransferase pfam01068 3 DNA_ligase_A_M ATP dependent DNA ligase domain pfam01070 8 FMN_dh FMN-dependent dehydrogenase pfam01071 1 GARS_A Phosphoribosylglycinamide synthetase pfam01073 6 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase pfam01074 3 Glyco_hydro_38 Glycosyl hydrolases family 38 N-terminal pfam01075 1 Glyco_transf_9 Glycosyltransferase family 9 pfam01077 3 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain pfam01080 3 Presenilin Presenilin pfam01081 1 Aldolase KDPG and KHG aldolase pfam01084 2 Ribosomal_S18 Ribosomal protein S18 pfam01086 4 Clathrin_lg_ch Clathrin light chain pfam01087 1 GalP_UDP_transf Galactose-1-phosphate uridyl pfam01088 3 Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase pfam01090 2 Ribosomal_S19e Ribosomal protein S19e pfam01092 3 Ribosomal_S6e Ribosomal protein S6e pfam01094 5 ANF_receptor Receptor family ligand binding region pfam01095 85 Pectinesterase Pectinesterase pfam01096 2 TFIIS_C Transcription factor S-II (TFIIS) pfam01103 4 Bac_surface_Ag Surface antigen pfam01105 14 EMP24_GP25L emp24/gp25L/p24 family/GOLD pfam01106 3 NifU NifU-like domain pfam01107 8 MP Viral movement protein (MP) pfam01112 5 Asparaginase_2 Asparaginase pfam01113 1 DapB_N Dihydrodipicolinate reductase pfam01115 1 F_actin_cap_B F-actin capping protein pfam01116 2 F_bP_aldolase Fructose-bisphosphate aldolase class-II pfam01118 2 Semialdhyde_dh Semialdehyde dehydrogenase pfam01120 2 Alpha_L_fucos Alpha-L-fucosidase pfam01121 1 CoaE Dephospho-CoA kinase pfam01124 2 MAPEG MAPEG family pfam01125 2 G10 G10 protein pfam01126 3 Heme_oxygenase Heme oxygenase pfam01128 1 IspD 2-C-methyl-D-erythritol 4-phosphate pfam01131 3 Topoisom_bac DNA topoisomerase pfam01133 1 ER Enhancer of rudimentary pfam01134 1 GIDA Glucose inhibited division protein A pfam01135 1 PCMT Protein-L-isoaspartate(D-aspartate) pfam01137 1 RTC RNA 3'-terminal phosphate cyclase pfam01138 9 RNase_PH 3' exoribonuclease family pfam01142 1 TruD tRNA pseudouridine synthase D (TruD) pfam01145 20 Band_7 SPFH domain / Band 7 family pfam01148 4 CTP_transf_1 Cytidylyltransferase family pfam01149 1 Fapy_DNA_glyco Formamidopyrimidine-DNA glycosylase pfam01150 14 GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family pfam01151 9 ELO GNS1/SUR4 family pfam01152 3 Bac_globin Bacterial-like globin pfam01156 12 IU_nuc_hydro Inosine-uridine preferring nucleoside pfam01157 2 Ribosomal_L21e Ribosomal protein L21e pfam01158 3 Ribosomal_L36e Ribosomal protein L36e pfam01159 3 Ribosomal_L6e Ribosomal protein L6e pfam01161 13 PBP Phosphatidylethanolamine-binding protein pfam01163 2 RIO1 RIO1 family pfam01165 2 Ribosomal_S21 Ribosomal protein S21 pfam01167 12 Tub Tub family pfam01168 3 Ala_racemase_N Alanine racemase pfam01169 5 UPF0016 Uncharacterized protein family UPF0016 pfam01170 1 UPF0020 Putative RNA methylase family UPF0020 pfam01171 2 ATP_bind_3 PP-loop family pfam01174 1 SNO SNO glutamine amidotransferase family pfam01176 4 eIF-1a Translation initiation factor 1A / IF-1 pfam01177 1 Asp_Glu_race Asp/Glu/Hydantoin racemase pfam01179 8 Cu_amine_oxid Copper amine oxidase pfam01180 2 DHO_dh Dihydroorotate dehydrogenase pfam01182 6 Glucosamine_iso Glucosamine-6-phosphate pfam01187 3 MIF Macrophage migration inhibitory factor (MIF) pfam01189 8 Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F pfam01190 25 Pollen_Ole_e_I Pollen proteins Ole e I like pfam01191 4 RNA_pol_Rpb5_C RNA polymerase Rpb5 pfam01192 1 RNA_pol_Rpb6 RNA polymerase Rpb6 pfam01193 2 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation pfam01194 1 RNA_pol_N RNA polymerases N / 8 kDa subunit pfam01195 3 Pept_tRNA_hydro Peptidyl-tRNA hydrolase pfam01196 3 Ribosomal_L17 Ribosomal protein L17 pfam01197 1 Ribosomal_L31 Ribosomal protein L31 pfam01198 2 Ribosomal_L31e Ribosomal protein L31e pfam01199 3 Ribosomal_L34e Ribosomal protein L34e pfam01200 3 Ribosomal_S28e Ribosomal protein S28e pfam01201 5 Ribosomal_S8e Ribosomal protein S8e pfam01202 3 SKI Shikimate kinase pfam01204 1 Trehalase Trehalase pfam01205 1 UPF0029 Uncharacterized protein family UPF0029 pfam01207 6 Dus Dihydrouridine synthase (Dus) pfam01208 2 URO-D Uroporphyrinogen decarboxylase (URO-D) pfam01209 2 Ubie_methyltran ubiE/COQ5 methyltransferase family pfam01210 1 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate pfam01212 1 Beta_elim_lyase Beta-eliminating lyase pfam01213 4 CAP_N Adenylate cyclase associated (CAP) N terminal pfam01214 4 CK_II_beta Casein kinase II regulatory subunit pfam01215 2 COX5B Cytochrome c oxidase subunit Vb pfam01217 8 Clat_adaptor_s Clathrin adaptor complex small chain pfam01218 1 Coprogen_oxidas Coproporphyrinogen III oxidase pfam01221 9 Dynein_light Dynein light chain type 1 pfam01222 3 ERG4_ERG24 Ergosterol biosynthesis ERG4/ERG24 family pfam01227 1 GTP_cyclohydroI GTP cyclohydrolase I pfam01230 4 HIT HIT domain pfam01237 7 Oxysterol_BP Oxysterol-binding protein pfam01238 3 PMI_typeI Phosphomannose isomerase type I pfam01239 2 PPTA Protein prenyltransferase alpha subunit repeat pfam01241 2 PSI_PSAK Photosystem I psaG / psaK pfam01245 2 Ribosomal_L19 Ribosomal protein L19 pfam01246 4 Ribosomal_L24e Ribosomal protein L24e pfam01247 3 Ribosomal_L35Ae Ribosomal protein L35Ae pfam01248 14 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 pfam01249 3 Ribosomal_S21e Ribosomal protein S21e pfam01250 4 Ribosomal_S6 Ribosomal protein S6 pfam01251 3 Ribosomal_S7e Ribosomal protein S7e pfam01253 7 SUI1 Translation initiation factor SUI1 pfam01255 9 Prenyltransf Putative undecaprenyl diphosphate pfam01256 1 Carb_kinase Carbohydrate kinase pfam01257 1 2Fe-2S_thioredx Thioredoxin-like [2Fe-2S] ferredoxin pfam01259 1 SAICAR_synt SAICAR synthetase pfam01261 1 AP_endonuc_2 Xylose isomerase-like TIM barrel pfam01263 16 Aldose_epim Aldose 1-epimerase pfam01264 2 Chorismate_synt Chorismate synthase pfam01266 6 DAO FAD dependent oxidoreductase pfam01267 2 F-actin_cap_A F-actin capping protein alpha subunit pfam01268 1 FTHFS Formate--tetrahydrofolate ligase pfam01269 1 Fibrillarin Fibrillarin pfam01274 3 Malate_synthase Malate synthase pfam01276 9 OKR_DC_1 Orn/Lys/Arg decarboxylase pfam01277 10 Oleosin Oleosin pfam01280 3 Ribosomal_L19e Ribosomal protein L19e pfam01281 1 Ribosomal_L9_N Ribosomal protein L9 pfam01282 3 Ribosomal_S24e Ribosomal protein S24e pfam01283 2 Ribosomal_S26e Ribosomal protein S26e pfam01287 6 eIF-5a Eukaryotic elongation factor 5A hypusine pfam01293 2 PEPCK_ATP Phosphoenolpyruvate carboxykinase pfam01294 3 Ribosomal_L13e Ribosomal protein L13e pfam01300 2 Sua5_yciO_yrdC Telomere recombination pfam01301 18 Glyco_hydro_35 Glycosyl hydrolases family 35 pfam01302 1 CAP_GLY CAP-Gly domain pfam01323 1 DSBA DSBA-like thioredoxin domain pfam01326 2 PPDK_N Pyruvate phosphate dikinase pfam01327 2 Pep_deformylase Polypeptide deformylase pfam01329 2 Pterin_4a Pterin 4 alpha carbinolamine dehydratase pfam01331 3 mRNA_cap_enzyme mRNA capping enzyme pfam01343 1 Peptidase_S49 Peptidase family S49 pfam01344 20 Kelch_1 Kelch motif pfam01348 1 Intron_maturas2 Type II intron maturase pfam01351 1 RNase_HII Ribonuclease HII pfam01357 41 Pollen_allerg_1 Pollen allergen pfam01363 5 FYVE FYVE zinc finger pfam01367 1 5_3_exonuc 5'-3' exonuclease pfam01369 9 Sec7 Sec7 domain pfam01370 42 Epimerase NAD dependent epimerase/dehydratase family pfam01373 9 Glyco_hydro_14 Glycosyl hydrolase family 14 pfam01379 1 Porphobil_deam Porphobilinogen deaminase pfam01380 2 SIS SIS domain pfam01384 1 PHO4 Phosphate transporter family pfam01388 11 ARID ARID/BRIGHT DNA binding domain pfam01397 12 Terpene_synth Terpene synthase pfam01398 12 JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease pfam01399 12 PCI PCI domain pfam01406 2 tRNA-synt_1e tRNA synthetases class I (C) catalytic pfam01408 6 GFO_IDH_MocA Oxidoreductase family pfam01409 3 tRNA-synt_2d tRNA synthetases class II core domain (F) pfam01411 3 tRNA-synt_2c tRNA synthetases class II (A) pfam01412 17 ArfGap Putative GTPase activating protein for Arf pfam01416 5 PseudoU_synth_1 tRNA pseudouridine synthase pfam01417 7 ENTH ENTH domain pfam01419 8 Jacalin Jacalin-like lectin domain pfam01423 24 LSM LSM domain pfam01424 1 R3H R3H domain pfam01425 14 Amidase Amidase pfam01426 12 BAH BAH domain pfam01428 4 zf-AN1 AN1-like Zinc finger pfam01429 11 MBD Methyl-CpG binding domain pfam01432 3 Peptidase_M3 Peptidase family M3 pfam01433 3 Peptidase_M1 Peptidase family M1 pfam01434 10 Peptidase_M41 Peptidase family M41 pfam01435 2 Peptidase_M48 Peptidase family M48 pfam01439 5 Metallothio_2 Metallothionein pfam01450 2 IlvC Acetohydroxy acid isomeroreductase pfam01451 1 LMWPc Low molecular weight phosphotyrosine protein pfam01453 27 B_lectin D-mannose binding lectin pfam01454 2 MAGE MAGE family pfam01457 1 Peptidase_M8 Leishmanolysin pfam01458 4 UPF0051 Uncharacterized protein family (UPF0051) pfam01459 9 Porin_3 Eukaryotic porin pfam01464 1 SLT Transglycosylase SLT domain pfam01466 21 Skp1 Skp1 family pfam01467 6 CTP_transf_like Cytidylyltransferase-like pfam01470 2 Peptidase_C15 Pyroglutamyl peptidase pfam01471 2 PG_binding_1 Putative peptidoglycan binding domain pfam01472 1 PUA PUA domain pfam01474 5 DAHP_synth_2 Class-II DAHP synthetase family pfam01476 4 LysM LysM domain pfam01477 7 PLAT PLAT/LH2 domain pfam01479 9 S4 S4 domain pfam01480 2 PWI PWI domain pfam01483 1 P_proprotein Proprotein convertase P-domain pfam01485 7 IBR IBR domain pfam01486 31 K-box K-box region pfam01487 3 DHquinase_I Type I 3-dehydroquinase pfam01488 2 Shikimate_DH Shikimate / quinate 5-dehydrogenase pfam01490 58 Aa_trans Transmembrane amino acid transporter protein pfam01491 1 Frataxin_Cyay Frataxin-like domain pfam01494 8 FAD_binding_3 FAD binding domain pfam01496 5 V_ATPase_I V-type ATPase 116kDa subunit family pfam01501 42 Glyco_transf_8 Glycosyl transferase family 8 pfam01502 1 PRA-CH Phosphoribosyl-AMP cyclohydrolase pfam01504 15 PIP5K Phosphatidylinositol-4-phosphate 5-Kinase pfam01507 5 PAPS_reduct Phosphoadenosine phosphosulfate reductase pfam01509 1 TruB_N TruB family pseudouridylate synthase (N terminal pfam01512 1 Complex1_51K Respiratory-chain NADH dehydrogenase 51 Kd pfam01513 5 NAD_kinase ATP-NAD kinase pfam01521 4 Fe-S_biosyn Iron-sulphur cluster biosynthesis pfam01529 27 zf-DHHC DHHC palmitoyltransferase pfam01532 5 Glyco_hydro_47 Glycosyl hydrolase family 47 pfam01536 5 SAM_decarbox Adenosylmethionine decarboxylase pfam01541 2 GIY-YIG GIY-YIG catalytic domain pfam01544 7 CorA CorA-like Mg2+ transporter protein pfam01545 12 Cation_efflux Cation efflux family pfam01546 15 Peptidase_M20 Peptidase family M20/M25/M40 pfam01553 9 Acyltransferase Acyltransferase pfam01554 77 MatE MatE pfam01556 21 DnaJ_C DnaJ C terminal domain pfam01557 2 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase pfam01564 10 Spermine_synth Spermine/spermidine synthase pfam01565 29 FAD_binding_4 FAD binding domain pfam01566 8 Nramp Natural resistance-associated macrophage protein pfam01569 10 PAP2 PAP2 superfamily pfam01571 3 GCV_T Aminomethyltransferase folate-binding domain pfam01575 2 MaoC_dehydratas MaoC like domain pfam01578 7 Cytochrom_C_asm Cytochrome C assembly protein pfam01582 36 TIR TIR domain pfam01583 4 APS_kinase Adenylylsulphate kinase pfam01585 7 G-patch G-patch domain pfam01588 2 tRNA_bind Putative tRNA binding domain pfam01592 2 NifU_N NifU-like N terminal domain pfam01593 27 Amino_oxidase Flavin containing amine oxidoreductase pfam01594 2 AI-2E_transport AI-2E family transporter pfam01595 9 DUF21 Domain of unknown function DUF21 pfam01596 31 Methyltransf_3 O-methyltransferase pfam01597 3 GCV_H Glycine cleavage H-protein pfam01602 15 Adaptin_N Adaptin N terminal region pfam01603 10 B56 Protein phosphatase 2A regulatory B subunit (B56 pfam01612 16 DNA_pol_A_exo1 3'-5' exonuclease pfam01619 2 Pro_dh Proline dehydrogenase pfam01624 1 MutS_I MutS domain I pfam01625 5 PMSR Peptide methionine sulfoxide reductase pfam01627 5 Hpt Hpt domain pfam01632 2 Ribosomal_L35p Ribosomal protein L35 pfam01633 3 Choline_kinase Choline/ethanolamine kinase pfam01634 1 HisG ATP phosphoribosyltransferase pfam01636 2 APH Phosphotransferase enzyme family pfam01641 4 SelR SelR domain pfam01643 4 Acyl-ACP_TE Acyl-ACP thioesterase pfam01645 1 Glu_synthase Conserved region in glutamate synthase pfam01648 2 ACPS 4'-phosphopantetheinyl transferase superfamily pfam01649 1 Ribosomal_S20p Ribosomal protein S20 pfam01650 20 Peptidase_C13 Peptidase C13 family pfam01652 4 IF4E Eukaryotic initiation factor 4E pfam01655 2 Ribosomal_L32e Ribosomal protein L32 pfam01656 2 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain pfam01657 21 Stress-antifung Salt stress response/antifungal pfam01661 3 Macro Macro domain pfam01663 4 Phosphodiest Type I phosphodiesterase / nucleotide pfam01667 6 Ribosomal_S27e Ribosomal protein S27 pfam01676 1 Metalloenzyme Metalloenzyme superfamily pfam01678 1 DAP_epimerase Diaminopimelate epimerase pfam01679 4 Pmp3 Proteolipid membrane potential modulator pfam01680 2 SOR_SNZ SOR/SNZ family pfam01687 1 Flavokinase Riboflavin kinase pfam01694 15 Rhomboid Rhomboid family pfam01697 7 Glyco_transf_92 Glycosyltransferase family 92 pfam01698 1 FLO_LFY Floricaula / Leafy protein pfam01699 14 Na_Ca_ex Sodium/calcium exchanger protein pfam01701 1 PSI_PsaJ Photosystem I reaction centre subunit IX / pfam01702 2 TGT Queuine tRNA-ribosyltransferase pfam01704 5 UDPGP UTP--glucose-1-phosphate uridylyltransferase pfam01709 1 Transcrip_reg Transcriptional regulator pfam01712 1 dNK Deoxynucleoside kinase pfam01715 57 IPPT IPP transferase pfam01716 6 MSP Manganese-stabilizing protein / photosystem II pfam01717 2 Meth_synt_2 Cobalamin-independent synthase pfam01722 4 BolA BolA-like protein pfam01725 1 Ham1p_like Ham1 family pfam01728 2 FtsJ FtsJ-like methyltransferase pfam01729 1 QRPTase_C Quinolinate phosphoribosyl transferase pfam01730 1 UreF UreF pfam01733 7 Nucleoside_tran Nucleoside transporter pfam01734 17 Patatin Patatin-like phospholipase pfam01737 3 Ycf9 YCF9 pfam01738 8 DLH Dienelactone hydrolase family pfam01740 1 STAS STAS domain pfam01743 5 PolyA_pol Poly A polymerase head domain pfam01746 1 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase pfam01747 3 ATP-sulfurylase ATP-sulfurylase pfam01749 4 IBB Importin beta binding domain pfam01753 2 zf-MYND MYND finger pfam01754 7 zf-A20 A20-like zinc finger pfam01756 4 ACOX Acyl-CoA oxidase pfam01758 6 SBF Sodium Bile acid symporter family pfam01761 1 DHQ_synthase 3-dehydroquinate synthase pfam01762 17 Galactosyl_T Galactosyltransferase pfam01764 56 Lipase_3 Lipase (class 3) pfam01765 2 RRF Ribosome recycling factor pfam01774 1 UreD UreD urease accessory protein pfam01775 4 Ribosomal_L18A Ribosomal proteins pfam01776 3 Ribosomal_L22e Ribosomal L22e protein family pfam01777 3 Ribosomal_L27e Ribosomal L27e protein family pfam01778 4 Ribosomal_L28e Ribosomal L28e protein family pfam01779 2 Ribosomal_L29e Ribosomal L29e protein family pfam01780 4 Ribosomal_L37ae Ribosomal L37ae protein family pfam01781 2 Ribosomal_L38e Ribosomal L38e protein family pfam01782 1 RimM RimM N-terminal domain pfam01783 2 Ribosomal_L32p Ribosomal L32p protein family pfam01786 5 AOX Alternative oxidase pfam01789 11 PsbP PsbP pfam01794 4 Ferric_reduct Ferric reductase like transmembrane pfam01795 2 Methyltransf_5 MraW methylase family pfam01798 7 Nop snoRNA binding domain pfam01803 4 LIM_bind LIM-domain binding protein pfam01805 3 Surp Surp module pfam01808 1 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme pfam01809 1 Haemolytic Haemolytic domain pfam01812 2 5-FTHF_cyc-lig 5-formyltetrahydrofolate cyclo-ligase pfam01813 1 ATP-synt_D ATP synthase subunit D pfam01814 2 Hemerythrin Hemerythrin HHE cation binding domain pfam01823 9 MACPF MAC/Perforin domain pfam01824 2 MatK_N MatK/TrnK amino terminal region pfam01833 1 TIG IPT/TIG domain pfam01841 1 Transglut_core Transglutaminase-like superfamily pfam01842 5 ACT ACT domain pfam01843 1 DIL DIL domain pfam01846 3 FF FF domain pfam01849 5 NAC NAC domain pfam01852 35 START START domain pfam01853 1 MOZ_SAS MOZ/SAS family pfam01858 1 RB_A Retinoblastoma-associated protein A domain pfam01866 2 Diphthamide_syn Putative diphthamide synthesis protein pfam01869 2 BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family pfam01871 1 AMMECR1 AMMECR1 pfam01873 5 eIF-5_eIF-2B Domain found in IF2B/IF5 pfam01875 1 Memo Memo-like protein pfam01876 1 RNase_P_p30 RNase P subunit p30 pfam01878 1 EVE EVE domain pfam01883 1 DUF59 Domain of unknown function DUF59 pfam01885 1 PTS_2-RNA RNA 2'-phosphotransferase pfam01894 1 UPF0047 Uncharacterized protein family UPF0047 pfam01896 1 DNA_primase_S DNA primase small subunit pfam01900 1 RNase_P_Rpp14 Rpp14/Pop5 family pfam01902 1 Diphthami_syn_2 Diphthamide synthase pfam01903 1 CbiX CbiX pfam01907 5 Ribosomal_L37e Ribosomal protein L37e pfam01912 4 eIF-6 eIF-6 family pfam01915 8 Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal pfam01916 2 DS Deoxyhypusine synthase pfam01918 8 Alba Alba pfam01920 4 Prefoldin_2 Prefoldin subunit pfam01922 1 SRP19 SRP19 protein pfam01925 8 TauE Sulfite exporter TauE/SafE pfam01926 12 MMR_HSR1 50S ribosome-binding GTPase pfam01927 1 Mut7-C Mut7-C RNAse domain pfam01928 4 CYTH CYTH domain pfam01929 4 Ribosomal_L14e Ribosomal protein L14 pfam01933 1 UPF0052 Uncharacterized protein family UPF0052 pfam01936 9 NYN NYN domain pfam01937 2 DUF89 Protein of unknown function DUF89 pfam01940 2 DUF92 Integral membrane protein DUF92 pfam01946 1 Thi4 Thi4 family pfam01956 2 DUF106 Integral membrane protein DUF106 pfam01959 1 DHQS 3-dehydroquinate synthase (EC 4 pfam01960 1 ArgJ ArgJ family pfam01963 2 TraB TraB family pfam01964 1 ThiC_Rad_SAM Radical SAM ThiC family pfam01965 4 DJ-1_PfpI DJ-1/PfpI family pfam01966 2 HD HD domain pfam01967 1 MoaC MoaC family pfam01974 1 tRNA_int_endo tRNA intron endonuclease pfam01975 5 SurE Survival protein SurE pfam01979 5 Amidohydro_1 Amidohydrolase family pfam01980 1 UPF0066 Uncharacterized protein family UPF0066 pfam01981 3 PTH2 Peptidyl-tRNA hydrolase PTH2 pfam01984 2 dsDNA_bind Double-stranded DNA-binding domain pfam01985 15 CRS1_YhbY CRS1 / YhbY (CRM) domain pfam01987 1 AIM24 Mitochondrial biogenesis AIM24 pfam01988 11 VIT1 VIT family pfam01990 1 ATP-synt_F ATP synthase (F/14-kDa) subunit pfam01991 5 vATP-synt_E ATP synthase (E/31 kDa) subunit pfam01992 1 vATP-synt_AC39 ATP synthase (C/AC39) subunit pfam01997 2 Translin Translin family pfam02005 5 TRM N2 pfam02020 2 W2 eIF4-gamma/eIF5/eIF2-epsilon pfam02033 1 RBFA Ribosome-binding factor A pfam02036 1 SCP2 SCP-2 sterol transfer family pfam02037 1 SAP SAP domain pfam02041 1 Auxin_BP Auxin binding protein pfam02042 11 RWP-RK RWP-RK domain pfam02045 11 CBFB_NFYA CCAAT-binding transcription factor pfam02046 2 COX6A Cytochrome c oxidase subunit VIa pfam02068 1 Metallothio_PEC Plant PEC family metallothionein pfam02089 2 Palm_thioest Palmitoyl protein thioesterase pfam02092 1 tRNA_synt_2f Glycyl-tRNA synthetase beta subunit pfam02096 4 60KD_IMP 60Kd inner membrane protein pfam02099 2 Josephin Josephin pfam02104 1 SURF1 SURF1 family pfam02109 1 DAD DAD family pfam02110 1 HK Hydroxyethylthiazole kinase family pfam02114 1 Phosducin Phosducin pfam02115 6 Rho_GDI RHO protein GDP dissociation inhibitor pfam02121 1 IP_trans Phosphatidylinositol transfer protein pfam02127 2 Peptidase_M18 Aminopeptidase I zinc metalloprotease pfam02130 1 UPF0054 Uncharacterized protein family UPF0054 pfam02133 1 Transp_cyt_pur Permease for cytosine/purines pfam02135 5 zf-TAZ TAZ zinc finger pfam02136 16 NTF2 Nuclear transport factor 2 (NTF2) domain pfam02137 1 A_deamin Adenosine-deaminase (editase) domain pfam02138 4 Beach Beige/BEACH domain pfam02140 2 Gal_Lectin Galactose binding lectin domain pfam02141 3 DENN DENN (AEX-3) domain pfam02144 1 Rad1 Repair protein Rad1/Rec1/Rad17 pfam02146 2 SIR2 Sir2 family pfam02148 1 zf-UBP Zn-finger in ubiquitin-hydrolases and other pfam02152 1 FolB Dihydroneopterin aldolase pfam02153 2 PDH Prephenate dehydrogenase pfam02163 4 Peptidase_M50 Peptidase family M50 pfam02167 3 Cytochrom_C1 Cytochrome C1 family pfam02171 17 Piwi Piwi domain pfam02176 1 zf-TRAF TRAF-type zinc finger pfam02179 8 BAG BAG domain pfam02181 23 FH2 Formin Homology 2 Domain pfam02182 15 SAD_SRA SAD/SRA domain pfam02183 1 HALZ Homeobox associated leucine zipper pfam02190 3 LON_substr_bdg ATP-dependent protease La (LON) pfam02194 2 PXA PXA domain pfam02195 3 ParBc ParB-like nuclease domain pfam02201 9 SWIB SWIB/MDM2 domain pfam02204 1 VPS9 Vacuolar sorting protein 9 (VPS9) domain pfam02207 3 zf-UBR Putative zinc finger in N-recognin (UBR box) pfam02209 2 VHP Villin headpiece domain pfam02212 2 GED Dynamin GTPase effector domain pfam02213 7 GYF GYF domain pfam02214 9 BTB_2 BTB/POZ domain pfam02219 2 MTHFR Methylenetetrahydrofolate reductase pfam02221 3 E1_DerP2_DerF2 ML domain pfam02222 1 ATP-grasp ATP-grasp domain pfam02223 1 Thymidylate_kin Thymidylate kinase pfam02225 7 PA PA domain pfam02229 2 PC4 Transcriptional Coactivator p15 (PC4) pfam02230 5 Abhydrolase_2 Phospholipase/Carboxylesterase pfam02234 6 CDI Cyclin-dependent kinase inhibitor pfam02238 2 COX7a Cytochrome c oxidase subunit VII pfam02245 1 Pur_DNA_glyco Methylpurine-DNA glycosylase (MPG) pfam02259 2 FAT FAT domain pfam02263 10 GBP Guanylate-binding protein pfam02265 3 S1-P1_nuclease S1/P1 Nuclease pfam02269 3 TFIID-18kDa Transcription initiation factor IID pfam02270 2 TFIIF_beta Transcription initiation factor IIF pfam02271 1 UCR_14kD Ubiquinol-cytochrome C reductase complex 14kD pfam02272 1 DHHA1 DHHA1 domain pfam02290 1 SRP14 Signal recognition particle 14kD protein pfam02291 1 TFIID-31kDa Transcription initiation factor IID pfam02296 1 Alpha_adaptin_C Alpha adaptin AP2 pfam02297 6 COX6B Cytochrome oxidase c subunit VIb pfam02298 47 Cu_bind_like Plastocyanin-like domain pfam02301 4 HORMA HORMA domain pfam02309 26 AUX_IAA AUX/IAA family pfam02319 2 E2F_TDP E2F/DP family winged-helix DNA-binding pfam02320 2 UCR_hinge Ubiquinol-cytochrome C reductase hinge pfam02325 3 YGGT YGGT family pfam02326 1 YMF19 Plant ATP synthase F0 pfam02330 6 MAM33 Mitochondrial glycoprotein pfam02338 9 OTU OTU-like cysteine protease pfam02341 2 RcbX RbcX protein pfam02347 1 GDC-P Glycine cleavage system P-protein pfam02348 3 CTP_transf_3 Cytidylyltransferase pfam02353 5 CMAS Mycolic acid cyclopropane synthetase pfam02357 1 NusG Transcription termination factor nusG pfam02358 9 Trehalose_PPase Trehalose-phosphatase pfam02361 1 CbiQ Cobalt transport protein pfam02362 74 B3 B3 DNA binding domain pfam02364 10 Glucan_synthase 1 pfam02365 65 NAM No apical meristem (NAM) protein pfam02373 15 JmjC JmjC domain pfam02374 6 ArsA_ATPase Anion-transporting ATPase pfam02383 9 Syja_N SacI homology domain pfam02386 2 TrkH Cation transport protein pfam02390 2 Methyltransf_4 Putative methyltransferase pfam02391 1 MoaE MoaE protein pfam02392 1 Ycf4 Ycf4 pfam02401 1 LYTB LytB protein pfam02405 1 MlaE Permease MlaE pfam02410 2 RsfS Ribosomal silencing factor during starvation pfam02416 2 MttA_Hcf106 mttA/Hcf106 family pfam02423 1 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin pfam02427 2 PSI_PsaE Photosystem I reaction centre subunit IV / pfam02428 14 Prot_inhib_II Potato type II proteinase inhibitor pfam02431 4 Chalcone Chalcone-flavanone isomerase pfam02441 2 Flavoprotein Flavoprotein pfam02446 2 Glyco_hydro_77 4-alpha-glucanotransferase pfam02450 9 LCAT Lecithin:cholesterol acyltransferase pfam02453 21 Reticulon Reticulon pfam02458 99 Transferase Transferase family pfam02463 14 SMC_N RecF/RecN/SMC N terminal domain pfam02466 12 Tim17 Tim17/Tim22/Tim23/Pmp24 family pfam02469 20 Fasciclin Fasciclin domain pfam02470 1 MlaD MlaD protein pfam02475 2 Met_10 Met-10+ like-protein pfam02481 1 DNA_processg_A DNA recombination-mediator protein A pfam02485 34 Branch Core-2/I-Branching enzyme pfam02492 4 cobW CobW/HypB/UreG pfam02496 6 ABA_WDS ABA/WDS induced protein pfam02502 1 LacAB_rpiB Ribose/Galactose Isomerase pfam02507 3 PSI_PsaF Photosystem I reaction centre subunit III pfam02514 2 CobN-Mg_chel CobN/Magnesium Chelatase pfam02516 2 STT3 Oligosaccharyl transferase STT3 subunit pfam02517 6 Abi CAAX protease self-immunity pfam02518 4 HATPase_c Histidine kinase- pfam02519 130 Auxin_inducible Auxin responsive protein pfam02527 1 GidB rRNA small subunit methyltransferase G pfam02531 1 PsaD PsaD pfam02532 2 PsbI Photosystem II reaction centre I protein (PSII 4 pfam02535 16 Zip ZIP Zinc transporter pfam02536 28 mTERF mTERF pfam02537 1 CRCB CrcB-like protein pfam02538 1 Hydantoinase_B Hydantoinase B/oxoprolinase pfam02540 1 NAD_synthase NAD synthase pfam02541 1 Ppx-GppA Ppx/GppA phosphatase family pfam02542 1 YgbB YgbB family pfam02544 6 Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase pfam02545 2 Maf Maf-like protein pfam02548 1 Pantoate_transf Ketopantoate hydroxymethyltransferase pfam02560 1 Cyanate_lyase Cyanate lyase C-terminal domain pfam02567 1 PhzC-PhzF Phenazine biosynthesis-like protein pfam02569 1 Pantoate_ligase Pantoate-beta-alanine ligase pfam02574 2 S-methyl_trans Homocysteine S-methyltransferase pfam02575 2 YbaB_DNA_bd YbaB/EbfC DNA-binding family pfam02576 1 DUF150 Putative ribosome maturation factor RimP pfam02577 3 DNase-RNase Bifunctional nuclease pfam02580 1 Tyr_Deacylase D-Tyr-tRNA(Tyr) deacylase pfam02581 2 TMP-TENI Thiamine monophosphate synthase/TENI pfam02582 2 DUF155 Uncharacterized ACR pfam02585 3 PIG-L GlcNAc-PI de-N-acetylase pfam02589 1 LUD_dom LUD domain pfam02590 1 SPOUT_MTase Predicted SPOUT methyltransferase pfam02594 2 DUF167 Uncharacterized ACR pfam02597 1 ThiS ThiS family pfam02598 1 Methyltrn_RNA_3 Putative RNA methyltransferase pfam02601 1 Exonuc_VII_L Exonuclease VII pfam02602 1 HEM4 Uroporphyrinogen-III synthase HemD pfam02605 2 PsaL Photosystem I reaction centre subunit XI pfam02606 1 LpxK Tetraacyldisaccharide-1-P 4'-kinase pfam02617 1 ClpS ATP-dependent Clp protease adaptor protein ClpS pfam02620 2 DUF177 Uncharacterized ACR pfam02622 2 DUF179 Uncharacterized ACR pfam02628 1 COX15-CtaA Cytochrome oxidase assembly protein pfam02630 2 SCO1-SenC SCO1/SenC pfam02631 1 RecX RecX family pfam02636 2 Methyltransf_28 Putative pfam02653 1 BPD_transp_2 Branched-chain amino acid transport system pfam02657 4 SufE Fe-S metabolism associated domain pfam02666 2 PS_Dcarbxylase Phosphatidylserine decarboxylase pfam02668 2 TauD Taurine catabolism dioxygenase TauD pfam02670 1 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate pfam02671 11 PAH Paired amphipathic helix repeat pfam02672 3 CP12 CP12 domain pfam02676 1 TYW3 Methyltransferase TYW3 pfam02678 2 Pirin Pirin pfam02679 1 ComA (2R)-phospho-3-sulfolactate synthase (ComA) pfam02681 5 DUF212 Divergent PAP2 family pfam02683 1 DsbD Cytochrome C biogenesis protein transmembrane pfam02684 1 LpxB Lipid-A-disaccharide synthetase pfam02686 1 Glu-tRNAGln Glu-tRNAGln amidotransferase C subunit pfam02696 3 UPF0061 Uncharacterized ACR pfam02701 36 zf-Dof Dof domain pfam02704 21 GASA Gibberellin regulated protein pfam02705 24 K_trans K+ potassium transporter pfam02713 1 DUF220 Domain of unknown function DUF220 pfam02714 13 RSN1_7TM Calcium-dependent channel pfam02721 2 DUF223 Domain of unknown function DUF223 pfam02724 4 CDC45 CDC45-like protein pfam02729 1 OTCace_N Aspartate/ornithine carbamoyltransferase pfam02731 3 SKIP_SNW SKIP/SNW domain pfam02732 3 ERCC4 ERCC4 domain pfam02733 2 Dak1 Dak1 domain pfam02735 1 Ku Ku70/Ku80 beta-barrel domain pfam02737 7 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase pfam02738 10 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde pfam02739 2 5_3_exonuc_N 5'-3' exonuclease pfam02747 1 PCNA_C Proliferating cell nuclear antigen pfam02751 1 TFIIA_gamma_C Transcription initiation factor IIA pfam02765 1 POT1 Telomeric single stranded DNA binding POT1/CDC13 pfam02769 1 AIRS_C AIR synthase related protein pfam02771 3 Acyl-CoA_dh_N Acyl-CoA dehydrogenase pfam02772 2 S-AdoMet_synt_M S-adenosylmethionine synthetase pfam02773 3 S-AdoMet_synt_C S-adenosylmethionine synthetase pfam02775 2 TPP_enzyme_C Thiamine pyrophosphate enzyme pfam02776 7 TPP_enzyme_N Thiamine pyrophosphate enzyme pfam02777 5 Sod_Fe_C Iron/manganese superoxide dismutases pfam02779 6 Transket_pyr Transketolase pfam02780 1 Transketolase_C Transketolase pfam02781 4 G6PD_C Glucose-6-phosphate dehydrogenase pfam02782 3 FGGY_C FGGY family of carbohydrate kinases pfam02784 6 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase pfam02786 3 CPSase_L_D2 Carbamoyl-phosphate synthase L chain pfam02788 2 RuBisCO_large_N Ribulose bisphosphate carboxylase pfam02790 2 COX2_TM Cytochrome C oxidase subunit II pfam02791 3 DDT DDT domain pfam02792 1 Mago_nashi Mago nashi protein pfam02797 1 Chal_sti_synt_C Chalcone and stilbene synthases pfam02798 24 GST_N Glutathione S-transferase pfam02799 2 NMT_C Myristoyl-CoA:protein N-myristoyltransferase pfam02800 11 Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase pfam02801 2 Ketoacyl-synt_C Beta-ketoacyl synthase pfam02806 1 Alpha-amylase_C Alpha amylase pfam02811 1 PHP PHP domain pfam02815 1 MIR MIR domain pfam02823 5 ATP-synt_DE_N ATP synthase pfam02826 7 2-Hacid_dh_C D-isomer specific 2-hydroxyacid pfam02836 1 Glyco_hydro_2_C Glycosyl hydrolases family 2 pfam02837 1 Glyco_hydro_2_N Glycosyl hydrolases family 2 pfam02840 3 Prp18 Prp18 domain pfam02841 1 GBP_C Guanylate-binding protein pfam02847 7 MA3 MA3 domain pfam02854 5 MIF4G MIF4G domain pfam02861 2 Clp_N Clp amino terminal domain pfam02862 1 DDHD DDHD domain pfam02866 4 Ldh_1_C lactate/malate dehydrogenase pfam02867 4 Ribonuc_red_lgC Ribonucleotide reductase pfam02873 1 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase pfam02874 2 ATP-synt_ab_N ATP synthase alpha/beta family pfam02878 4 PGM_PMM_I Phosphoglucomutase/phosphomannomutase pfam02879 1 PGM_PMM_II Phosphoglucomutase/phosphomannomutase pfam02882 3 THF_DHG_CYH_C Tetrahydrofolate pfam02886 1 LBP_BPI_CETP_C LBP / BPI / CETP family pfam02889 9 Sec63 Sec63 Brl domain pfam02891 3 zf-MIZ MIZ/SP-RING zinc finger pfam02892 2 zf-BED BED zinc finger pfam02893 14 GRAM GRAM domain pfam02896 1 PEP-utilizers_C PEP-utilising enzyme pfam02897 5 Peptidase_S9_N Prolyl oligopeptidase pfam02900 2 LigB Catalytic LigB subunit of aromatic ring-opening pfam02902 18 Peptidase_C48 Ulp1 protease family pfam02906 1 Fe_hyd_lg_C Iron only hydrogenase large subunit pfam02913 2 FAD-oxidase_C FAD linked oxidases pfam02915 1 Rubrerythrin Rubrerythrin pfam02919 1 Topoisom_I_N Eukaryotic DNA topoisomerase I pfam02922 5 CBM_48 Carbohydrate-binding module 48 (Isoamylase pfam02926 1 THUMP THUMP domain pfam02934 1 GatB_N GatB/GatE catalytic domain pfam02941 1 FeThRed_A Ferredoxin thioredoxin reductase variable pfam02943 1 FeThRed_B Ferredoxin thioredoxin reductase catalytic pfam02953 7 zf-Tim10_DDP Tim10/DDP family zinc finger pfam02956 1 TT_ORF1 TT viral orf 1 pfam02966 4 DIM1 Mitosis protein DIM1 pfam02970 1 TBCA Tubulin binding cofactor A pfam02977 4 CarbpepA_inh Carboxypeptidase A inhibitor pfam02984 1 Cyclin_C Cyclin pfam02990 23 EMP70 Endomembrane protein 70 pfam02991 7 Atg8 Autophagy protein Atg8 ubiquitin like pfam02992 1 Transposase_21 Transposase family tnp2 pfam02996 4 Prefoldin Prefoldin subunit pfam03000 31 NPH3 NPH3 family pfam03004 12 Transposase_24 Plant transposase (Ptta/En/Spm family) pfam03006 6 HlyIII Haemolysin-III related pfam03007 1 WES_acyltransf Wax ester synthase-like Acyl-CoA pfam03009 8 GDPD Glycerophosphoryl diester phosphodiesterase pfam03016 47 Exostosin Exostosin family pfam03018 37 Dirigent Dirigent-like protein pfam03023 1 MVIN MviN-like protein pfam03024 1 Folate_rec Folate receptor family pfam03029 3 ATP_bind_1 Conserved hypothetical ATP binding protein pfam03030 7 H_PPase Inorganic H+ pyrophosphatase pfam03031 14 NIF NLI interacting factor-like phosphatase pfam03033 4 Glyco_transf_28 Glycosyltransferase family 28 pfam03034 2 PSS Phosphatidyl serine synthase pfam03040 2 CemA CemA family pfam03054 2 tRNA_Me_trans tRNA methyl transferase pfam03055 11 RPE65 Retinal pigment epithelial membrane protein pfam03058 1 Sar8_2 Sar8 pfam03059 1 NAS Nicotianamine synthase protein pfam03061 7 4HBT Thioesterase superfamily pfam03062 5 MBOAT MBOAT pfam03069 1 FmdA_AmdA Acetamidase/Formamidase family pfam03070 4 TENA_THI-4 TENA/THI-4/PQQC family pfam03071 1 GNT-I GNT-I family pfam03073 1 TspO_MBR TspO/MBR family pfam03079 3 ARD ARD/ARD' family pfam03080 29 DUF239 Domain of unknown function (DUF239) pfam03081 21 Exo70 Exo70 exocyst complex subunit pfam03083 32 MtN3_slv Sugar efflux transporter for intercellular pfam03087 16 DUF241 Arabidopsis protein of unknown function pfam03088 14 Str_synth Strictosidine synthase pfam03091 1 CutA1 CutA1 divalent ion tolerance protein pfam03092 11 BT1 BT1 family pfam03094 22 Mlo Mlo family pfam03095 1 PTPA Phosphotyrosyl phosphate activator (PTPA) protein pfam03096 3 Ndr Ndr family pfam03097 5 BRO1 BRO1-like domain pfam03098 6 An_peroxidase Animal haem peroxidase pfam03099 3 BPL_LplA_LipB Biotin/lipoate A/B protein ligase family pfam03100 2 CcmE CcmE pfam03101 11 FAR1 FAR1 DNA-binding domain pfam03104 1 DNA_pol_B_exo1 DNA polymerase family B pfam03105 6 SPX SPX domain pfam03106 82 WRKY WRKY DNA -binding domain pfam03107 6 C1_2 C1 domain pfam03108 10 DBD_Tnp_Mut MuDR family transposase pfam03109 16 ABC1 ABC1 family pfam03110 16 SBP SBP domain pfam03118 1 RNA_pol_A_CTD Bacterial RNA polymerase pfam03121 1 Herpes_UL52 Herpesviridae UL52/UL70 DNA primase pfam03124 8 EXS EXS family pfam03126 11 Plus-3 Plus-3 domain pfam03129 2 HGTP_anticodon Anticodon binding domain pfam03133 1 TTL Tubulin-tyrosine ligase family pfam03134 13 TB2_DP1_HVA22 TB2/DP1 pfam03140 26 DUF247 Plant protein of unknown function pfam03141 38 Methyltransf_29 Putative pfam03143 2 GTP_EFTU_D3 Elongation factor Tu C-terminal domain pfam03145 15 Sina Seven in absentia protein family pfam03151 40 TPT Triose-phosphate Transporter family pfam03152 3 UFD1 Ubiquitin fusion degradation protein UFD1 pfam03153 1 TFIIA Transcription factor IIA pfam03154 2 Atrophin-1 Atrophin-1 family pfam03155 3 Alg6_Alg8 ALG6 pfam03159 3 XRN_N XRN 5'-3' exonuclease N-terminus pfam03161 1 LAGLIDADG_2 LAGLIDADG DNA endonuclease family pfam03162 4 Y_phosphatase2 Tyrosine phosphatase family pfam03164 1 Mon1 Trafficking protein Mon1 pfam03167 1 UDG Uracil DNA glycosylase superfamily pfam03168 20 LEA_2 Late embryogenesis abundant protein pfam03169 23 OPT OPT oligopeptide transporter protein pfam03171 147 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily pfam03175 1 DNA_pol_B_2 DNA polymerase type B pfam03178 1 CPSF_A CPSF A subunit region pfam03179 3 V-ATPase_G Vacuolar (H+)-ATPase G subunit pfam03181 15 BURP BURP domain pfam03188 7 Cytochrom_B561 Eukaryotic cytochrome b561 pfam03190 1 Thioredox_DsbH Protein of unknown function pfam03193 2 DUF258 Protein of unknown function pfam03194 2 LUC7 LUC7 N_terminus pfam03195 56 DUF260 Protein of unknown function DUF260 pfam03200 1 Glyco_hydro_63 Glycosyl hydrolase family 63 C-terminal pfam03208 13 PRA1 PRA1 family protein pfam03214 8 RGP Reversibly glycosylated polypeptide pfam03215 1 Rad17 Rad17 cell cycle checkpoint protein pfam03219 3 TLC TLC ATP/ADP transporter pfam03222 3 Trp_Tyr_perm Tryptophan/tyrosine permease family pfam03223 1 V-ATPase_C V-ATPase subunit C pfam03224 2 V-ATPase_H_N V-ATPase subunit H pfam03226 8 Yippee-Mis18 Yippee zinc-binding/DNA-binding /Mis18 pfam03227 3 GILT Gamma interferon inducible lysosomal thiol pfam03237 1 Terminase_6 Terminase-like family pfam03242 3 LEA_3 Late embryogenesis abundant protein pfam03244 3 PSI_PsaH Photosystem I reaction centre subunit VI pfam03248 3 Rer1 Rer1 family pfam03254 3 XG_FTase Xyloglucan fucosyltransferase pfam03255 3 ACCA Acetyl co-enzyme A carboxylase carboxyltransferase pfam03256 1 ANAPC10 Anaphase-promoting complex pfam03266 3 NTPase_1 NTPase pfam03271 2 EB1 EB1-like C-terminal motif pfam03283 20 PAE Pectinacetylesterase pfam03291 3 Pox_MCEL mRNA capping enzyme pfam03297 2 Ribosomal_S25 S25 ribosomal protein pfam03311 4 Cornichon Cornichon protein pfam03321 32 GH3 GH3 auxin-responsive promoter pfam03328 1 HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family pfam03330 6 DPBB_1 Lytic transglycolase pfam03331 2 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase pfam03332 5 PMM Eukaryotic phosphomannomutase pfam03343 3 SART-1 SART-1 family pfam03345 1 DDOST_48kD Oligosaccharyltransferase 48 kDa subunit pfam03348 4 Serinc Serine incorporator (Serinc) pfam03349 1 Toluene_X Outer membrane protein transport protein pfam03350 5 UPF0114 Uncharacterized protein family pfam03351 3 DOMON DOMON domain pfam03352 8 Adenine_glyco Methyladenine glycosylase pfam03357 12 Snf7 Snf7 pfam03358 10 FMN_red NADPH-dependent FMN reductase pfam03360 6 Glyco_transf_43 Glycosyltransferase family 43 pfam03364 4 Polyketide_cyc Polyketide cyclase / dehydrase and lipid pfam03366 2 YEATS YEATS family pfam03367 1 zf-ZPR1 ZPR1 zinc-finger domain pfam03368 7 Dicer_dimer Dicer dimerisation domain pfam03371 2 PRP38 PRP38 family pfam03372 11 Exo_endo_phos Endonuclease/Exonuclease/phosphatase pfam03378 1 CAS_CSE1 CAS/CSE protein pfam03381 3 CDC50 LEM3 (ligand-effect modulator 3) family / CDC50 pfam03385 1 DUF288 Protein of unknown function pfam03386 4 ENOD93 Early nodulin 93 ENOD93 protein pfam03398 12 Ist1 Regulator of Vps4 activity in the MVB pathway pfam03399 3 SAC3_GANP SAC3/GANP family pfam03401 3 TctC Tripartite tricarboxylate transporter family pfam03405 9 FA_desaturase_2 Fatty acid desaturase pfam03407 11 Nucleotid_trans Nucleotide-diphospho-sugar transferase pfam03416 1 Peptidase_C54 Peptidase family C54 pfam03417 1 AAT Acyl-coenzyme A:6-aminopenicillanic acid pfam03428 1 RP-C Replication protein C N-terminal domain pfam03435 3 Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding pfam03439 2 Spt5-NGN Early transcription elongation factor of RNA pfam03441 5 FAD_binding_7 FAD binding domain of DNA photolyase pfam03446 6 NAD_binding_2 NAD binding domain of 6-phosphogluconate pfam03453 1 MoeA_N MoeA N-terminal region (domain I and II) pfam03462 5 PCRF PCRF domain pfam03463 2 eRF1_1 eRF1 domain 1 pfam03464 4 eRF1_2 eRF1 domain 2 pfam03466 1 LysR_substrate LysR substrate binding domain pfam03467 2 Smg4_UPF3 Smg-4/UPF3 family pfam03468 7 XS XS domain pfam03469 7 XH XH domain pfam03471 1 CorC_HlyC Transporter associated domain pfam03476 2 MOSC_N MOSC N-terminal beta barrel domain pfam03478 20 DUF295 Protein of unknown function (DUF295) pfam03479 37 DUF296 Domain of unknown function (DUF296) pfam03484 1 B5 tRNA synthetase B5 domain pfam03486 3 HI0933_like HI0933-like protein pfam03492 23 Methyltransf_7 SAM dependent carboxyl pfam03501 2 S10_plectin Plectin/S10 domain pfam03514 55 GRAS GRAS domain family pfam03517 1 Voldacs Regulator of volume decrease after cellular pfam03531 2 SSrecog Structure-specific recognition protein (SSRP1) pfam03540 1 TFIID_30kDa Transcription initiation factor TFIID pfam03547 18 Mem_trans Membrane transport protein pfam03552 34 Cellulose_synt Cellulose synthase pfam03556 5 Cullin_binding Cullin binding pfam03568 1 Peptidase_C50 Peptidase family C50 pfam03572 3 Peptidase_S41 Peptidase family S41 pfam03587 3 EMG1 EMG1/NEP1 methyltransferase pfam03595 7 SLAC1 Voltage-dependent anion channel pfam03600 3 CitMHS Citrate transporter pfam03602 3 Cons_hypoth95 Conserved hypothetical protein 95 pfam03604 1 DNA_RNApol_7kD DNA directed RNA polymerase pfam03618 1 Kinase-PPPase Kinase/pyrophosphorylase pfam03619 11 Solute_trans_a Organic solute transporter Ostalpha pfam03629 12 SASA Carbohydrate esterase pfam03630 2 Fumble Fumble pfam03634 38 TCP TCP family transcription factor pfam03635 4 Vps35 Vacuolar protein sorting-associated protein 35 pfam03637 3 Mob1_phocein Mob1/phocein family pfam03638 4 TCR Tesmin/TSO1-like CXC domain pfam03639 3 Glyco_hydro_81 Glycosyl hydrolase family 81 pfam03640 1 Lipoprotein_15 Secreted repeat of unknown function pfam03641 9 Lysine_decarbox Possible lysine decarboxylase pfam03643 2 Vps26 Vacuolar protein sorting-associated protein 26 pfam03644 1 Glyco_hydro_85 Glycosyl hydrolase family 85 pfam03647 6 Tmemb_14 Transmembrane proteins 14C pfam03649 1 UPF0014 Uncharacterized protein family (UPF0014) pfam03650 5 MPC Uncharacterized protein family (UPF0041) pfam03652 2 RuvX Holliday junction resolvase pfam03656 4 Pam16 Pam16 pfam03660 1 PHF5 PHF5-like protein pfam03662 5 Glyco_hydro_79n Glycosyl hydrolase family 79 pfam03665 3 UPF0172 Uncharacterized protein family (UPF0172) pfam03669 3 UPF0139 Uncharacterized protein family (UPF0139) pfam03671 2 Ufm1 Ubiquitin fold modifier 1 protein pfam03676 4 UPF0183 Uncharacterized protein family (UPF0183) pfam03690 1 UPF0160 Uncharacterized protein family (UPF0160) pfam03692 1 CxxCxxCC Putative zinc- or iron-chelating domain pfam03694 1 Erg28 Erg28 like protein pfam03695 1 UPF0149 Uncharacterized protein family (UPF0149) pfam03703 1 bPH_2 Bacterial PH domain pfam03715 2 Noc2 Noc2p family pfam03719 2 Ribosomal_S5_C Ribosomal protein S5 pfam03721 5 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase pfam03727 6 Hexokinase_2 Hexokinase pfam03735 6 ENT ENT domain pfam03737 2 Methyltransf_6 Demethylmenaquinone methyltransferase pfam03741 1 TerC Integral membrane protein TerC family pfam03745 1 DUF309 Domain of unknown function (DUF309) pfam03754 6 DUF313 Domain of unknown function (DUF313) pfam03759 13 PRONE PRONE (Plant-specific Rop nucleotide exchanger) pfam03760 4 LEA_1 Late embryogenesis abundant (LEA) group 1 pfam03763 19 Remorin_C Remorin pfam03767 9 Acid_phosphat_B HAD superfamily pfam03770 2 IPK Inositol polyphosphate kinase pfam03776 1 MinE Septum formation topological specificity factor pfam03791 6 KNOX2 KNOX2 domain pfam03797 1 Autotransporter Autotransporter beta-domain pfam03798 7 TRAM_LAG1_CLN8 TLC domain pfam03800 1 Nuf2 Nuf2 family pfam03801 1 Ndc80_HEC HEC/Ndc80p family pfam03803 1 Scramblase Scramblase pfam03810 6 IBN_N Importin-beta N-terminal domain pfam03813 1 Nrap Nrap protein pfam03822 1 NAF NAF domain pfam03828 2 PAP_assoc Cid1 family poly A polymerase pfam03834 1 Rad10 Binding domain of DNA repair protein Ercc1 pfam03839 1 Sec62 Translocation protein Sec62 pfam03847 3 TFIID_20kDa Transcription initiation factor TFIID pfam03849 1 Tfb2 Transcription factor Tfb2 pfam03850 1 Tfb4 Transcription factor Tfb4 pfam03853 2 YjeF_N YjeF-related protein N-terminus pfam03859 7 CG-1 CG-1 domain pfam03870 2 RNA_pol_Rpb8 RNA polymerase Rpb8 pfam03871 1 RNA_pol_Rpb5_N RNA polymerase Rpb5 pfam03874 2 RNA_pol_Rpb4 RNA polymerase Rpb4 pfam03876 3 SHS2_Rpb7-N SHS2 domain found in N terminus of pfam03878 3 YIF1 YIF1 pfam03879 1 Cgr1 Cgr1 family pfam03881 1 Fructosamin_kin Fructosamine kinase pfam03893 1 Lipase3_N Lipase 3 N-terminal region pfam03896 2 TRAP_alpha Translocon-associated protein (TRAP) pfam03901 2 Glyco_transf_22 Alg9-like mannosyltransferase family pfam03908 1 Sec20 Sec20 pfam03909 9 BSD BSD domain pfam03911 2 Sec61_beta Sec61beta family pfam03912 1 Psb28 Psb28 protein pfam03914 2 CBF CBF/Mak21 family pfam03917 1 GSH_synth_ATP Eukaryotic glutathione synthase pfam03918 1 CcmH Cytochrome C biogenesis protein pfam03924 3 CHASE CHASE domain pfam03931 9 Skp1_POZ Skp1 family pfam03936 42 Terpene_synth_C Terpene synthase family pfam03937 1 Sdh5 Flavinator of succinate dehydrogenase pfam03938 1 OmpH Outer membrane protein (OmpH-like) pfam03939 3 Ribosomal_L23eN Ribosomal protein L23 pfam03942 3 DTW DTW domain pfam03946 3 Ribosomal_L11_N Ribosomal protein L11 pfam03947 9 Ribosomal_L2_C Ribosomal Proteins L2 pfam03948 1 Ribosomal_L9_C Ribosomal protein L9 pfam03949 7 Malic_M Malic enzyme pfam03951 2 Gln-synt_N Glutamine synthetase pfam03952 2 Enolase_N Enolase pfam03953 3 Tubulin_C Tubulin C-terminal domain pfam03959 8 FSH1 Serine hydrolase (FSH1) pfam03962 1 Mnd1 Mnd1 family pfam03966 1 Trm112p Trm112p-like protein pfam03969 2 AFG1_ATPase AFG1-like ATPase pfam03981 1 Ubiq_cyt_C_chap Ubiquinol-cytochrome C chaperone pfam03982 1 DAGAT Diacylglycerol acyltransferase pfam03985 2 Paf1 Paf1 pfam03986 1 Autophagy_N Autophagocytosis associated protein (Atg3) pfam03987 1 Autophagy_act_C Autophagocytosis associated protein pfam03997 2 VPS28 VPS28 protein pfam03998 1 Utp11 Utp11 protein pfam03999 9 MAP65_ASE1 Microtubule associated protein (MAP65/ASE1 pfam04000 2 Sas10_Utp3 Sas10/Utp3/C1D family pfam04003 4 Utp12 Dip2/Utp12 Family pfam04004 1 Leo1 Leo1-like protein pfam04005 3 Hus1 Hus1-like protein pfam04006 4 Mpp10 Mpp10 protein pfam04012 1 PspA_IM30 PspA/IM30 family pfam04030 1 ALO D-arabinono-1 pfam04031 1 Las1 Las1-like pfam04032 2 Rpr2 RNAse P Rpr2/Rpp21/SNM1 subunit domain pfam04034 1 DUF367 Domain of unknown function (DUF367) pfam04037 2 DUF382 Domain of unknown function (DUF382) pfam04042 2 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B pfam04043 44 PMEI Plant invertase/pectin methylesterase inhibitor pfam04045 2 P34-Arc Arp2/3 complex pfam04046 1 PSP PSP pfam04048 1 Sec8_exocyst Sec8 exocyst complex component specific pfam04050 1 Upf2 Up-frameshift suppressor 2 pfam04051 5 TRAPP Transport protein particle (TRAPP) component pfam04053 3 Coatomer_WDAD Coatomer WD associated region pfam04054 1 Not1 CCR4-Not complex component pfam04055 6 Radical_SAM Radical SAM superfamily pfam04056 1 Ssl1 Ssl1-like pfam04059 13 RRM_2 RNA recognition motif 2 pfam04061 3 ORMDL ORMDL family pfam04062 2 P21-Arc ARP2/3 complex ARPC3 (21 kDa) subunit pfam04063 1 DUF383 Domain of unknown function (DUF383) pfam04065 1 Not3 Not1 N-terminal domain pfam04072 3 LCM Leucine carboxyl methyltransferase pfam04073 2 tRNA_edit Aminoacyl-tRNA editing domain pfam04078 19 Rcd1 Cell differentiation family pfam04080 5 Per1 Per1-like pfam04081 2 DNA_pol_delta_4 DNA polymerase delta pfam04083 7 Abhydro_lipase Partial alpha/beta-hydrolase lipase pfam04084 2 ORC2 Origin recognition complex subunit 2 pfam04091 2 Sec15 Exocyst complex subunit Sec15-like pfam04095 2 NAPRTase Nicotinate phosphoribosyltransferase pfam04096 4 Nucleoporin2 Nucleoporin autopeptidase pfam04097 1 Nic96 Nup93/Nic96 pfam04099 2 Sybindin Sybindin-like family pfam04100 1 Vps53_N Vps53-like pfam04101 2 Glyco_tran_28_C Glycosyltransferase family 28 pfam04104 1 DNA_primase_lrg Eukaryotic and archaeal DNA primase pfam04106 2 APG5 Autophagy protein Apg5 pfam04107 1 GCS2 Glutamate-cysteine ligase family 2(GCS2) pfam04109 1 APG9 Autophagy protein Apg9 pfam04110 1 APG12 Ubiquitin-like autophagy protein Apg12 pfam04111 4 APG6 Autophagy protein Apg6 pfam04112 1 Mak10 Mak10 subunit pfam04113 1 Gpi16 Gpi16 subunit pfam04114 1 Gaa1 Gaa1-like pfam04116 16 FA_hydroxylase Fatty acid hydroxylase superfamily pfam04117 12 Mpv17_PMP22 Mpv17 / PMP22 family pfam04121 1 Nup84_Nup100 Nuclear pore protein 84 / 107 pfam04124 1 Dor1 Dor1-like family pfam04127 2 DFP DNA / pantothenate metabolism flavoprotein pfam04129 1 Vps52 Vps52 / Sac2 family pfam04130 6 Spc97_Spc98 Spc97 / Spc98 family pfam04133 3 Vps55 Vacuolar protein sorting 55 pfam04134 2 DUF393 Protein of unknown function pfam04135 1 Nop10p Nucleolar RNA-binding protein pfam04136 2 Sec34 Sec34-like family pfam04137 1 ERO1 Endoplasmic Reticulum Oxidoreductin 1 (ERO1) pfam04139 1 Rad9 Rad9 pfam04140 1 ICMT Isoprenylcysteine carboxyl methyltransferase pfam04142 5 Nuc_sug_transp Nucleotide-sugar transporter pfam04144 6 SCAMP SCAMP family pfam04145 9 Ctr Ctr copper transporter family pfam04146 9 YTH YT521-B-like domain pfam04147 15 Nop14 Nop14-like family pfam04152 1 Mre11_DNA_bind Mre11 DNA-binding presumed domain pfam04153 2 NOT2_3_5 NOT2 / NOT3 / NOT5 family pfam04157 2 EAP30 EAP30/Vps36 family pfam04158 1 Sof1 Sof1-like domain pfam04161 1 Arv1 Arv1-like family pfam04172 1 LrgB LrgB-like family pfam04176 3 TIP41 TIP41-like family pfam04177 1 TAP42 TAP42-like family pfam04178 5 Got1 Got1/Sft2-like family pfam04181 1 RPAP2_Rtr1 Rtr1/RPAP2 family pfam04182 1 B-block_TFIIIC B-block binding subunit of TFIIIC pfam04185 3 Phosphoesterase Phosphoesterase family pfam04188 1 Mannosyl_trans2 Mannosyltransferase (PIG-V) pfam04189 1 Gcd10p Gcd10p family pfam04190 2 DUF410 Protein of unknown function (DUF410) pfam04191 1 PEMT Phospholipid methyltransferase pfam04192 1 Utp21 Utp21 specific WD40 associated putative domain pfam04193 4 PQ-loop PQ loop repeat pfam04194 2 PDCD2_C Programmed cell death protein 2 pfam04199 3 Cyclase Putative cyclase pfam04209 2 HgmA homogentisate 1 pfam04227 1 Indigoidine_A Indigoidine synthase A like protein pfam04241 1 DUF423 Protein of unknown function (DUF423) pfam04253 1 TFR_dimer Transferrin receptor-like dimerisation pfam04258 7 Peptidase_A22B Signal peptide peptidase pfam04263 2 TPK_catalytic Thiamin pyrophosphokinase pfam04266 1 ASCH ASCH domain pfam04278 2 Tic22 Tic22-like family pfam04280 2 Tim44 Tim44-like domain pfam04305 3 DUF455 Protein of unknown function (DUF455) pfam04321 2 RmlD_sub_bind RmlD substrate binding domain pfam04339 1 FemAB_like Peptidogalycan biosysnthesis/recognition pfam04359 1 DUF493 Protein of unknown function (DUF493) pfam04366 2 Ysc84 Las17-binding protein actin regulator pfam04367 5 DUF502 Protein of unknown function (DUF502) pfam04371 1 PAD_porph Porphyromonas-type peptidyl-arginine pfam04377 1 ATE_C Arginine-tRNA-protein transferase pfam04379 2 DUF525 ApaG domain pfam04387 3 PTPLA Protein tyrosine phosphatase-like protein pfam04388 1 Hamartin Hamartin protein pfam04389 4 Peptidase_M28 Peptidase family M28 pfam04398 27 DUF538 Protein of unknown function pfam04406 3 TP6A_N Type IIB DNA topoisomerase pfam04408 13 HA2 Helicase associated domain (HA2) pfam04410 2 Gar1 Gar1/Naf1 RNA binding region pfam04413 1 Glycos_transf_N 3-Deoxy-D-manno-octulosonic-acid pfam04414 2 tRNA_deacylase D-aminoacyl-tRNA deacylase pfam04418 1 DUF543 Domain of unknown function (DUF543) pfam04420 1 CHD5 CHD5-like protein pfam04424 1 DUF544 Protein of unknown function (DUF544) pfam04427 6 Brix Brix domain pfam04430 1 DUF498 Protein of unknown function (DUF498/DUF598) pfam04431 4 Pec_lyase_N Pectate lyase pfam04432 1 FrhB_FdhB_C Coenzyme F420 hydrogenase/dehydrogenase pfam04433 4 SWIRM SWIRM domain pfam04437 1 RINT1_TIP1 RINT-1 / TIP-1 family pfam04438 2 zf-HIT HIT zinc finger pfam04442 1 CtaG_Cox11 Cytochrome c oxidase assembly protein pfam04446 1 Thg1 tRNAHis guanylyltransferase pfam04450 10 BSP Peptidase of plants and bacteria pfam04452 1 Methyltrans_RNA RNA methyltransferase pfam04481 2 DUF561 Protein of unknown function (DUF561) pfam04483 4 DUF565 Protein of unknown function (DUF565) pfam04484 6 DUF566 Family of unknown function (DUF566) pfam04493 1 Endonuclease_5 Endonuclease V pfam04494 1 TFIID_NTD2 WD40 associated region in TFIID subunit pfam04499 4 SAPS SIT4 phosphatase-associated protein pfam04502 2 DUF572 Family of unknown function (DUF572) pfam04504 9 DUF573 Protein of unknown function pfam04506 1 Rft-1 Rft protein pfam04511 2 DER1 Der1-like family pfam04515 4 Choline_transpo Plasma-membrane choline transporter pfam04520 15 Senescence_reg Senescence regulator pfam04525 19 LOR LURP-one-related pfam04526 13 DUF568 Protein of unknown function (DUF568) pfam04535 47 DUF588 Domain of unknown function (DUF588) pfam04536 2 TPM_phosphatase TPM domain pfam04542 6 Sigma70_r2 Sigma-70 region 2 pfam04545 1 Sigma70_r4 Sigma-70 pfam04547 1 Anoctamin Calcium-activated chloride channel pfam04548 7 AIG1 AIG1 family pfam04551 1 GcpE GcpE protein pfam04561 1 RNA_pol_Rpb2_2 RNA polymerase Rpb2 pfam04563 1 RNA_pol_Rpb2_1 RNA polymerase beta subunit pfam04564 50 U-box U-box domain pfam04565 1 RNA_pol_Rpb2_3 RNA polymerase Rpb2 pfam04570 15 zf-FLZ zinc-finger of the FCS-type pfam04571 1 Lipin_N lipin pfam04572 5 Gb3_synth Alpha 1 pfam04573 1 SPC22 Signal peptidase subunit pfam04576 14 Zein-binding Zein-binding pfam04577 10 DUF563 Protein of unknown function (DUF563) pfam04588 4 HIG_1_N Hypoxia induced protein conserved region pfam04592 2 SelP_N Selenoprotein P pfam04597 2 Ribophorin_I Ribophorin I pfam04601 8 DUF569 Domain of unknown function (DUF569) pfam04603 1 Mog1 Ran-interacting Mog1 protein pfam04607 2 RelA_SpoT Region found in RelA / SpoT proteins pfam04614 1 Pex19 Pex19 protein family pfam04615 1 Utp14 Utp14 protein pfam04616 2 Glyco_hydro_43 Glycosyl hydrolases family 43 pfam04618 3 HD-ZIP_N HD-ZIP protein N terminus pfam04627 2 ATP-synt_Eps Mitochondrial ATP synthase epsilon pfam04628 2 Sedlin_N Sedlin pfam04640 25 PLATZ PLATZ transcription factor pfam04641 1 Rtf2 Rtf2 RING-finger pfam04646 21 DUF604 Protein of unknown function pfam04652 1 Vta1 Vta1 like pfam04654 10 DUF599 Protein of unknown function pfam04658 1 TAFII55_N TAFII55 protein conserved region pfam04667 2 Endosulfine cAMP-regulated phosphoprotein/endosulfine pfam04669 10 Polysacc_synt_4 Polysaccharide biosynthesis pfam04674 12 Phi_1 Phosphate-induced protein 1 conserved region pfam04677 2 CwfJ_C_1 Protein similar to CwfJ C-terminus 1 pfam04678 6 MCU Mitochondrial calcium uniporter pfam04683 1 Proteasom_Rpn13 Proteasome complex subunit Rpn13 pfam04685 3 DUF608 Glycosyl-hydrolase family 116 pfam04689 1 S1FA DNA binding protein S1FA pfam04690 9 YABBY YABBY protein pfam04695 2 Pex14_N Peroxisomal membrane anchor protein (Pex14p) pfam04696 1 Pinin_SDK_memA pinin/SDK/memA/ protein conserved pfam04699 1 P16-Arc ARP2/3 complex 16 kDa subunit (p16-Arc) pfam04707 2 PRELI PRELI-like family pfam04712 1 Radial_spoke Radial spokehead-like protein pfam04716 2 ETC_C1_NDUFA5 ETC complex I subunit conserved region pfam04718 3 ATP-synt_G Mitochondrial ATP synthase g subunit pfam04719 2 TAFII28 hTAFII28-like protein conserved region pfam04720 14 PDDEXK_6 PDDEXK-like family of unknown function pfam04722 1 Ssu72 Ssu72-like protein pfam04724 4 Glyco_transf_17 Glycosyltransferase family 17 pfam04725 2 PsbR Photosystem II 10 kDa polypeptide PsbR pfam04727 5 ELMO_CED12 ELMO/CED-12 family pfam04729 3 ASF1_hist_chap ASF1 like histone chaperone pfam04733 2 Coatomer_E Coatomer epsilon subunit pfam04734 2 Ceramidase_alk Neutral/alkaline non-lysosomal pfam04739 2 AMPKBI 5'-AMP-activated protein kinase beta subunit pfam04749 19 PLAC8 PLAC8 family pfam04751 1 DUF615 Protein of unknown function (DUF615) pfam04752 3 ChaC ChaC-like protein pfam04755 11 PAP_fibrillin PAP_fibrillin pfam04756 3 OST3_OST6 OST3 / OST6 family pfam04757 3 Pex2_Pex12 Pex2 / Pex12 amino terminal region pfam04758 2 Ribosomal_S30 Ribosomal protein S30 pfam04759 14 DUF617 Protein of unknown function pfam04762 1 IKI3 IKI3 family pfam04765 12 DUF616 Protein of unknown function (DUF616) pfam04770 36 ZF-HD_dimer ZF-HD protein dimerisation region pfam04774 3 HABP4_PAI-RBP1 Hyaluronan / mRNA binding family pfam04777 2 Evr1_Alr Erv1 / Alr family pfam04780 2 DUF629 Protein of unknown function (DUF629) pfam04782 11 DUF632 Protein of unknown function (DUF632) pfam04784 3 DUF547 Protein of unknown function pfam04788 9 DUF620 Protein of unknown function (DUF620) pfam04791 3 LMBR1 LMBR1-like membrane protein pfam04795 3 PAPA-1 PAPA-1-like conserved region pfam04800 2 ETC_C1_NDUFA4 ETC complex I subunit conserved region pfam04801 2 Sin_N Sin-like protein conserved region pfam04802 2 SMK-1 Component of IIS longevity pathway SMK-1 pfam04811 8 Sec23_trunk Sec23/Sec24 trunk domain pfam04818 6 CTD_bind RNA polymerase II-binding domain pfam04819 9 DUF716 Family of unknown function (DUF716) pfam04821 1 TIMELESS Timeless protein pfam04825 5 Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein pfam04827 5 Plant_tran Plant transposon protein pfam04832 9 SOUL SOUL heme-binding protein pfam04833 19 COBRA COBRA-like protein pfam04839 2 PSRP-3_Ycf65 Plastid and cyanobacterial ribosomal pfam04841 1 Vps16_N Vps16 pfam04842 5 DUF639 Plant protein of unknown function (DUF639) pfam04844 25 Ovate Transcriptional repressor pfam04845 2 PurA PurA ssDNA and RNA-binding protein pfam04851 2 ResIII Type III restriction enzyme pfam04852 13 DUF640 Protein of unknown function (DUF640) pfam04855 2 SNF5 SNF5 / SMARCB1 / INI1 pfam04857 9 CAF1 CAF1 family ribonuclease pfam04859 5 DUF641 Plant protein of unknown function (DUF641) pfam04862 8 DUF642 Protein of unknown function (DUF642) pfam04864 5 Alliinase_C Allinase pfam04869 1 Uso1_p115_head Uso1 / p115 like vesicle tethering pfam04871 1 Uso1_p115_C Uso1 / p115 like vesicle tethering protein pfam04873 9 EIN3 Ethylene insensitive 3 pfam04882 2 Peroxin-3 Peroxin-3 pfam04884 6 DUF647 Vitamin B6 photo-protection and homoeostasis pfam04885 10 Stig1 Stigma-specific protein pfam04889 2 Cwf_Cwc_15 Cwf15/Cwc15 cell cycle control protein pfam04900 3 Fcf1 Fcf1 pfam04909 2 Amidohydro_2 Amidohydrolase pfam04910 1 Tcf25 Transcriptional repressor TCF25 pfam04921 1 XAP5 XAP5 pfam04922 1 DIE2_ALG10 DIE2/ALG10 family pfam04927 4 SMP Seed maturation protein pfam04928 8 PAP_central Poly(A) polymerase central domain pfam04931 2 DNA_pol_phi DNA polymerase phi pfam04934 2 Med6 MED6 mediator sub complex component pfam04935 1 SURF6 Surfeit locus protein 6 pfam04937 12 DUF659 Protein of unknown function (DUF 659) pfam04939 1 RRS1 Ribosome biogenesis regulatory protein (RRS1) pfam04949 4 Transcrip_act Transcriptional activator pfam04950 2 RIBIOP_C 40S ribosome biogenesis protein Tsr1 and BMS1 pfam04959 1 ARS2 Arsenite-resistance protein 2 pfam04968 1 CHORD CHORD pfam04969 10 CS CS domain pfam04970 5 LRAT Lecithin retinol acyltransferase pfam04979 3 IPP-2 Protein phosphatase inhibitor 2 (IPP-2) pfam04981 2 NMD3 NMD3 family pfam04982 1 HPP HPP family pfam04987 1 PigN Phosphatidylinositolglycan class N (PIG-N) pfam04997 3 RNA_pol_Rpb1_1 RNA polymerase Rpb1 pfam04998 6 RNA_pol_Rpb1_5 RNA polymerase Rpb1 pfam05000 1 RNA_pol_Rpb1_4 RNA polymerase Rpb1 pfam05002 2 SGS SGS domain pfam05003 8 DUF668 Protein of unknown function (DUF668) pfam05004 3 IFRD Interferon-related developmental regulator (IFRD) pfam05007 1 Mannosyl_trans Mannosyltransferase (PIG-M) pfam05008 2 V-SNARE Vesicle transport v-SNARE protein N-terminus pfam05011 1 DBR1 Lariat debranching enzyme pfam05018 1 DUF667 Protein of unknown function (DUF667) pfam05019 1 Coq4 Coenzyme Q (ubiquinone) biosynthesis protein Coq4 pfam05021 1 NPL4 NPL4 family pfam05022 1 SRP40_C SRP40 pfam05024 1 Gpi1 N-acetylglucosaminyl transferase component (Gpi1) pfam05026 1 DCP2 Dcp2 pfam05028 4 PARG_cat Poly (ADP-ribose) glycohydrolase (PARG) pfam05030 4 SSXT SSXT protein (N-terminal region) pfam05033 4 Pre-SET Pre-SET motif pfam05042 6 Caleosin Caleosin related protein pfam05047 2 L51_S25_CI-B8 Mitochondrial ribosomal protein L51 / pfam05050 1 Methyltransf_21 Methyltransferase FkbM domain pfam05051 2 COX17 Cytochrome C oxidase copper chaperone (COX17) pfam05055 9 DUF677 Protein of unknown function (DUF677) pfam05056 10 DUF674 Protein of unknown function (DUF674) pfam05057 5 DUF676 Putative serine esterase (DUF676) pfam05060 1 MGAT2 N-acetylglucosaminyltransferase II (MGAT2) pfam05063 4 MT-A70 MT-A70 pfam05064 1 Nsp1_C Nsp1-like C-terminal region pfam05071 1 NDUFA12 NADH ubiquinone oxidoreductase subunit pfam05078 7 DUF679 Protein of unknown function (DUF679) pfam05089 4 NAGLU Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel pfam05091 1 eIF-3_zeta Eukaryotic translation initiation factor 3 pfam05093 2 CIAPIN1 Cytokine-induced anti-apoptosis inhibitor 1 pfam05096 2 Glu_cyclase_2 Glutamine cyclotransferase pfam05097 4 DUF688 Protein of unknown function (DUF688) pfam05109 1 Herpes_BLLF1 Herpes virus major outer envelope pfam05116 2 S6PP Sucrose-6F-phosphate phosphohydrolase pfam05125 1 Phage_cap_P2 Phage major capsid protein pfam05129 2 Elf1 Transcription elongation factor Elf1 like pfam05131 1 Pep3_Vps18 Pep3/Vps18/deep orange family pfam05132 2 RNA_pol_Rpc4 RNA polymerase III RPC4 pfam05140 2 ResB ResB-like family pfam05142 8 DUF702 Domain of unknown function (DUF702) pfam05147 4 LANC_like Lanthionine synthetase C-like protein pfam05148 1 Methyltransf_8 Hypothetical methyltransferase pfam05151 1 PsbM Photosystem II reaction centre M protein (PsbM) pfam05153 5 MIOX Myo-inositol oxygenase pfam05158 1 RNA_pol_Rpc34 RNA polymerase Rpc34 subunit pfam05160 2 DSS1_SEM1 DSS1/SEM1 family pfam05172 1 Nup35_RRM Nup53/35/40-type RNA recognition motif pfam05173 1 DapB_C Dihydrodipicolinate reductase pfam05175 1 MTS Methyltransferase small domain pfam05176 1 ATP-synt_10 ATP10 protein pfam05179 1 CDC73_C RNA pol II accessory factor pfam05180 3 zf-DNL DNL zinc finger pfam05182 2 Fip1 Fip1 motif pfam05183 6 RdRP RNA dependent RNA polymerase pfam05185 1 PRMT5 PRMT5 arginine-N-methyltransferase pfam05187 1 ETF_QO Electron transfer flavoprotein-ubiquinone pfam05192 2 MutS_III MutS domain III pfam05198 2 IF3_N Translation initiation factor IF-3 pfam05199 7 GMC_oxred_C GMC oxidoreductase pfam05201 1 GlutR_N Glutamyl-tRNAGlu reductase pfam05206 1 TRM13 Methyltransferase TRM13 pfam05207 1 zf-CSL CSL zinc finger pfam05208 1 ALG3 ALG3 protein pfam05212 13 DUF707 Protein of unknown function (DUF707) pfam05216 1 UNC-50 UNC-50 family pfam05221 4 AdoHcyase S-adenosyl-L-homocysteine hydrolase pfam05222 1 AlaDh_PNT_N Alanine dehydrogenase/PNT pfam05236 1 TAF4 Transcription initiation factor TFIID component pfam05241 1 EBP Emopamil binding protein pfam05251 1 UPF0197 Uncharacterized protein family (UPF0197) pfam05254 1 UPF0203 Uncharacterized protein family (UPF0203) pfam05255 1 UPF0220 Uncharacterized protein family (UPF0220) pfam05266 2 DUF724 Protein of unknown function (DUF724) pfam05277 2 DUF726 Protein of unknown function (DUF726) pfam05278 6 PEARLI-4 Arabidopsis phospholipase-like protein (PEARLI pfam05282 1 AAR2 AAR2 protein pfam05285 1 SDA1 SDA1 pfam05291 1 Bystin Bystin pfam05292 2 MCD Malonyl-CoA decarboxylase (MCD) pfam05327 1 RRN3 RNA polymerase I specific transcription initiation pfam05340 3 DUF740 Protein of unknown function (DUF740) pfam05346 1 DUF747 Eukaryotic membrane protein family pfam05347 6 Complex1_LYR Complex 1 protein (LYR family) pfam05348 1 UMP1 Proteasome maturation factor UMP1 pfam05362 2 Lon_C Lon protease (S16) C-terminal proteolytic domain pfam05365 1 UCR_UQCRX_QCR9 Ubiquinol-cytochrome C reductase pfam05368 11 NmrA NmrA-like family pfam05383 9 La La domain pfam05419 1 GUN4 GUN4-like pfam05421 1 DUF751 Protein of unknown function (DUF751) pfam05450 1 Nicastrin Nicastrin pfam05460 1 ORC6 Origin recognition complex subunit 6 (ORC6) pfam05462 1 Dicty_CAR Slime mold cyclic AMP receptor pfam05470 4 eIF-3c_N Eukaryotic translation initiation factor 3 pfam05477 1 SURF2 Surfeit locus protein 2 (SURF2) pfam05479 1 PsaN Photosystem I reaction centre subunit N (PSAN or pfam05486 1 SRP9-21 Signal recognition particle 9 kDa protein pfam05493 3 ATP_synt_H ATP synthase subunit H pfam05495 3 zf-CHY CHY zinc finger pfam05498 9 RALF Rapid ALkalinization Factor (RALF) pfam05512 4 AWPM-19 AWPM-19-like family pfam05514 4 HR_lesion HR-like lesion-inducing pfam05529 2 Bap31 B-cell receptor-associated protein 31-like pfam05536 1 Neurochondrin Neurochondrin pfam05542 9 DUF760 Protein of unknown function (DUF760) pfam05553 17 DUF761 Cotton fibre expressed protein pfam05557 1 MAD Mitotic checkpoint protein pfam05558 1 DREPP DREPP plasma membrane polypeptide pfam05562 3 WCOR413 Cold acclimation protein WCOR413 pfam05564 3 Auxin_repressed Dormancy/auxin associated protein pfam05577 6 Peptidase_S28 Serine carboxypeptidase S28 pfam05600 1 DUF773 Protein of unknown function (DUF773) pfam05602 1 CLPTM1 Cleft lip and palate transmembrane protein 1 pfam05603 1 DUF775 Protein of unknown function (DUF775) pfam05605 3 zf-Di19 Drought induced 19 protein (Di19) pfam05608 3 DUF778 Protein of unknown function (DUF778) pfam05615 2 THOC7 Tho complex subunit 7 pfam05617 7 Prolamin_like Prolamin-like pfam05620 1 DUF788 Protein of unknown function (DUF788) pfam05622 1 HOOK HOOK protein pfam05623 10 DUF789 Protein of unknown function (DUF789) pfam05625 1 PAXNEB PAXNEB protein pfam05627 8 AvrRpt-cleavage Cleavage site for pathogenic type III pfam05631 3 MFS_5 Sugar-tranasporters pfam05633 4 DUF793 Protein of unknown function (DUF793) pfam05634 7 APO_RNA-bind APO RNA-binding pfam05637 6 Glyco_transf_34 galactosyl transferase GMA12/MNN10 pfam05641 16 Agenet Agenet domain pfam05648 4 PEX11 Peroxisomal biogenesis factor 11 (PEX11) pfam05653 10 Mg_trans_NIPA Magnesium transporter NIPA pfam05659 2 RPW8 Arabidopsis broad-spectrum mildew resistance pfam05664 10 DUF810 Plant family of unknown function (DUF810) pfam05667 2 DUF812 Protein of unknown function (DUF812) pfam05669 2 Med31 SOH1 pfam05670 1 DUF814 Domain of unknown function (DUF814) pfam05676 1 NDUF_B7 NADH-ubiquinone oxidoreductase B18 subunit pfam05678 9 VQ VQ motif pfam05684 2 DUF819 Protein of unknown function (DUF819) pfam05686 8 Glyco_transf_90 Glycosyl transferase family 90 pfam05687 7 BES1_N BES1/BZR1 plant transcription factor pfam05691 6 Raffinose_syn Raffinose synthase or seed imbibition pfam05694 1 SBP56 56kDa selenium binding protein (SBP56) pfam05695 72 DUF825 Plant protein of unknown function (DUF825) pfam05697 2 Trigger_N Bacterial trigger factor protein (TF) pfam05698 1 Trigger_C Bacterial trigger factor protein (TF) pfam05699 118 Dimer_Tnp_hAT hAT family C-terminal dimerisation pfam05700 1 BCAS2 Breast carcinoma amplified sequence 2 (BCAS2) pfam05701 16 WEMBL Weak chloroplast movement under blue light pfam05703 6 Auxin_canalis Auxin canalisation pfam05705 4 DUF829 Eukaryotic protein of unknown function (DUF829) pfam05712 2 MRG MRG pfam05721 1 PhyH Phytanoyl-CoA dioxygenase (PhyH) pfam05724 1 TPMT Thiopurine S-methyltransferase (TPMT) pfam05726 2 Pirin_C Pirin C-terminal cupin domain pfam05739 6 SNARE SNARE domain pfam05742 2 TANGO2 Transport and Golgi organisation 2 pfam05743 3 UEV UEV domain pfam05753 2 TRAP_beta Translocon-associated protein beta (TRAPB) pfam05755 3 REF Rubber elongation factor protein (REF) pfam05757 4 PsbQ Oxygen evolving enhancer protein 3 (PsbQ) pfam05758 33 Ycf1 Ycf1 pfam05761 3 5_nucleotid 5' nucleotidase family pfam05764 1 YL1 YL1 nuclear protein pfam05768 1 DUF836 Glutaredoxin-like domain (DUF836) pfam05770 8 Ins134_P3_kin Inositol 1 pfam05773 4 RWD RWD domain pfam05786 1 Cnd2 Condensin complex subunit 2 pfam05793 1 TFIIF_alpha Transcription initiation factor IIF pfam05794 2 Tcp11 T-complex protein 11 pfam05811 2 DUF842 Eukaryotic protein of unknown function (DUF842) pfam05817 2 Ribophorin_II Oligosaccharyltransferase subunit pfam05818 1 TraT Enterobacterial TraT complement resistance pfam05822 1 UMPH-1 Pyrimidine 5'-nucleotidase (UMPH-1) pfam05832 1 DUF846 Eukaryotic protein of unknown function (DUF846) pfam05834 4 Lycopene_cycl Lycopene cyclase protein pfam05843 1 Suf Suppressor of forked protein (Suf) pfam05856 2 ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4) pfam05859 1 Mis12 Mis12 protein pfam05871 1 ESCRT-II ESCRT-II complex subunit pfam05873 2 Mt_ATP-synt_D ATP synthase D chain pfam05875 2 Ceramidase Ceramidase pfam05879 3 RHD3 Root hair defective 3 GTP-binding protein (RHD3) pfam05890 2 Ebp2 Eukaryotic rRNA processing protein EBP2 pfam05891 2 Methyltransf_PK AdoMet dependent proline pfam05899 4 Cupin_3 Protein of unknown function (DUF861) pfam05903 11 Peptidase_C97 PPPDE putative peptidase domain pfam05904 8 DUF863 Plant protein of unknown function (DUF863) pfam05907 2 DUF866 Eukaryotic protein of unknown function (DUF866) pfam05910 11 DUF868 Plant protein of unknown function (DUF868) pfam05911 10 FPP Filament-like plant protein pfam05915 1 DUF872 Eukaryotic protein of unknown function (DUF872) pfam05916 2 Sld5 GINS complex protein pfam05918 2 API5 Apoptosis inhibitory protein 5 (API5) pfam05919 12 Mitovir_RNA_pol Mitovirus RNA-dependent RNA polymerase pfam05920 4 Homeobox_KN Homeobox KN domain pfam05922 18 Inhibitor_I9 Peptidase inhibitor I9 pfam05929 1 Phage_GPO Phage capsid scaffolding protein (GPO) serine pfam05938 18 Self-incomp_S1 Plant self-incompatibility protein S1 pfam05954 1 Phage_GPD Phage late control gene D protein (GPD) pfam05958 2 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase pfam05970 63 PIF1 PIF1-like helicase pfam05971 1 Methyltransf_10 Protein of unknown function (DUF890) pfam05978 2 UNC-93 Ion channel regulatory protein UNC-93 pfam05983 1 Med7 MED7 protein pfam05991 1 NYN_YacP YacP-like NYN domain pfam05994 1 FragX_IP Cytoplasmic Fragile-X interacting family pfam05996 1 Fe_bilin_red Ferredoxin-dependent bilin reductase pfam05997 1 Nop52 Nucleolar protein pfam06017 2 Myosin_TH1 Unconventional myosin tail pfam06025 1 DUF913 Domain of Unknown Function (DUF913) pfam06026 5 Rib_5-P_isom_A Ribose 5-phosphate isomerase A pfam06027 4 SLC35F Solute carrier family 35 pfam06045 12 Rhamnogal_lyase Rhamnogalacturonate lyase family pfam06046 1 Sec6 Exocyst complex component Sec6 pfam06047 1 SynMuv_product Ras-induced vulval development pfam06058 3 DCP1 Dcp1-like decapping family pfam06068 3 TIP49 TIP49 C-terminus pfam06071 2 YchF-GTPase_C Protein of unknown function (DUF933) pfam06075 9 DUF936 Plant protein of unknown function (DUF936) pfam06087 2 Tyr-DNA_phospho Tyrosyl-DNA phosphodiesterase pfam06090 1 Ins_P5_2-kin Inositol-pentakisphosphate 2-kinase pfam06093 1 Spt4 Spt4/RpoE2 zinc finger pfam06094 4 GGACT Gamma-glutamyl cyclotransferase pfam06101 7 DUF946 Plant protein of unknown function (DUF946) pfam06102 1 DUF947 Domain of unknown function (DUF947) pfam06105 1 Aph-1 Aph-1 protein pfam06108 1 DUF952 Protein of unknown function (DUF952) pfam06110 1 DUF953 Eukaryotic protein of unknown function (DUF953) pfam06113 1 BRE Brain and reproductive organ-expressed protein pfam06127 2 DUF962 Protein of unknown function (DUF962) pfam06136 8 DUF966 Domain of unknown function (DUF966) pfam06155 1 DUF971 Protein of unknown function (DUF971) pfam06159 1 DUF974 Protein of unknown function (DUF974) pfam06172 1 Cupin_5 Cupin superfamily (DUF985) pfam06179 1 Med22 Surfeit locus protein 5 subunit 22 of Mediator pfam06200 15 tify tify domain pfam06201 4 PITH PITH domain pfam06203 33 CCT CCT motif pfam06206 2 CpeT CpeT/CpcT family (DUF1001) pfam06212 1 GRIM-19 GRIM-19 protein pfam06213 1 CobT Cobalamin biosynthesis protein CobT pfam06217 6 GAGA_bind GAGA binding protein-like family pfam06219 7 DUF1005 Protein of unknown function (DUF1005) pfam06220 2 zf-U1 U1 zinc finger pfam06221 1 zf-C2HC5 Putative zinc finger motif pfam06232 3 ATS3 Embryo-specific protein 3 pfam06241 3 Castor_Poll_mid Castor and Pollux pfam06244 1 DUF1014 Protein of unknown function (DUF1014) pfam06246 1 Isy1 Isy1-like splicing family pfam06248 2 Zw10 Centromere/kinetochore Zw10 pfam06258 2 Mito_fiss_Elm1 Mitochondrial fission ELM1 pfam06273 2 eIF-4B Plant specific eukaryotic initiation factor 4B pfam06298 1 PsbY Photosystem II protein Y (PsbY) pfam06320 1 GCN5L1 GCN5-like protein 1 (GCN5L1) pfam06325 2 PrmA Ribosomal protein L11 methyltransferase (PrmA) pfam06331 1 Tfb5 Transcription factor TFIIH complex subunit Tfb5 pfam06346 2 Drf_FH1 Formin Homology Region 1 pfam06351 1 Allene_ox_cyc Allene oxide cyclase pfam06364 4 DUF1068 Protein of unknown function (DUF1068) pfam06376 3 AGP Arabinogalactan peptide pfam06391 1 MAT1 CDK-activating kinase assembly factor MAT1 pfam06404 8 PSK Phytosulfokine precursor protein (PSK) pfam06405 1 RCC_reductase Red chlorophyll catabolite reductase (RCC pfam06414 3 Zeta_toxin Zeta toxin pfam06417 1 DUF1077 Protein of unknown function (DUF1077) pfam06418 3 CTP_synth_N CTP synthase N-terminus pfam06419 1 COG6 Conserved oligomeric complex COG6 pfam06421 1 LepA_C GTP-binding protein LepA C-terminus pfam06423 1 GWT1 GWT1 pfam06424 1 PRP1_N PRP1 splicing factor pfam06426 4 SATase_N Serine acetyltransferase pfam06427 1 UDP-g_GGTase UDP-glucose:Glycoprotein pfam06432 1 GPI2 Phosphatidylinositol pfam06454 5 DUF1084 Protein of unknown function (DUF1084) pfam06463 1 Mob_synth_C Molybdenum Cofactor Synthesis C pfam06472 2 ABC_membrane_2 ABC transporter transmembrane region 2 pfam06479 2 Ribonuc_2-5A Ribonuclease 2-5A pfam06485 1 DUF1092 Protein of unknown function (DUF1092) pfam06487 1 SAP18 Sin3 associated polypeptide p18 (SAP18) pfam06507 21 Auxin_resp Auxin response factor pfam06521 7 PAR1 PAR1 protein pfam06522 3 B12D NADH-ubiquinone reductase complex 1 MLRQ pfam06524 1 NOA36 NOA36 protein pfam06547 1 DUF1117 Protein of unknown function (DUF1117) pfam06549 2 DUF1118 Protein of unknown function (DUF1118) pfam06552 2 TOM20_plant Plant specific mitochondrial import pfam06574 1 FAD_syn FAD synthetase pfam06584 2 DIRP DIRP pfam06592 2 DUF1138 Protein of unknown function (DUF1138) pfam06596 1 PsbX Photosystem II reaction centre X protein (PsbX) pfam06602 1 Myotub-related Myotubularin-like phosphatase domain pfam06624 1 RAMP4 Ribosome associated membrane protein RAMP4 pfam06632 1 XRCC4 DNA double-strand break repair and V(D)J pfam06644 1 ATP11 ATP11 protein pfam06645 1 SPC12 Microsomal signal peptidase 12 kDa subunit pfam06650 1 SHR-BD SHR-binding domain of vacuolar-sorting associated pfam06658 1 DUF1168 Protein of unknown function (DUF1168) pfam06694 1 Plant_NMP1 Plant nuclear matrix protein 1 (NMP1) pfam06695 1 Sm_multidrug_ex Putative small multi-drug export pfam06697 7 DUF1191 Protein of unknown function (DUF1191) pfam06699 1 PIG-F GPI biosynthesis protein family Pig-F pfam06703 1 SPC25 Microsomal signal peptidase 25 kDa subunit pfam06708 3 DUF1195 Protein of unknown function (DUF1195) pfam06728 1 PIG-U GPI transamidase subunit PIG-U pfam06732 1 Pescadillo_N Pescadillo N-terminus pfam06733 2 DEAD_2 DEAD_2 pfam06744 1 IcmF_C Type VI secretion protein IcmF C-terminal pfam06747 2 CHCH CHCH domain pfam06749 14 DUF1218 Protein of unknown function (DUF1218) pfam06750 1 DiS_P_DiS Bacterial Peptidase A24 N-terminal domain pfam06760 3 DUF1221 Protein of unknown function (DUF1221) pfam06764 1 DUF1223 Protein of unknown function (DUF1223) pfam06775 3 Seipin Putative adipose-regulatory protein (Seipin) pfam06792 1 UPF0261 Uncharacterized protein family (UPF0261) pfam06799 2 DUF1230 Protein of unknown function (DUF1230) pfam06803 1 DUF1232 Protein of unknown function (DUF1232) pfam06813 21 Nodulin-like Nodulin-like pfam06814 9 Lung_7-TM_R Lung seven transmembrane receptor pfam06830 7 Root_cap Root cap pfam06838 1 Met_gamma_lyase Methionine gamma-lyase pfam06839 5 zf-GRF GRF zinc finger pfam06842 2 DUF1242 Protein of unknown function (DUF1242) pfam06858 1 NOG1 Nucleolar GTP-binding protein 1 (NOG1) pfam06859 1 Bin3 Bicoid-interacting protein 3 (Bin3) pfam06862 1 UTP25 Utp25 pfam06870 1 RNA_pol_I_A49 A49-like RNA polymerase I associated pfam06880 3 DUF1262 Protein of unknown function (DUF1262) pfam06881 1 Elongin_A RNA polymerase II transcription factor SIII pfam06884 4 DUF1264 Protein of unknown function (DUF1264) pfam06886 13 TPX2 Targeting protein for Xklp2 (TPX2) pfam06888 7 Put_Phosphatase Putative Phosphatase pfam06911 5 Senescence Senescence-associated protein pfam06916 3 DUF1279 Protein of unknown function (DUF1279) pfam06920 1 DHR-2 Dock homology region 2 pfam06925 3 MGDG_synth Monogalactosyldiacylglycerol (MGDG) pfam06941 1 NT5C 5' nucleotidase pfam06943 4 zf-LSD1 LSD1 zinc finger pfam06957 3 COPI_C Coatomer (COPI) alpha subunit C-terminus pfam06962 1 rRNA_methylase Putative rRNA methylase pfam06963 2 FPN1 Ferroportin1 (FPN1) pfam06964 2 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminal pfam06966 4 DUF1295 Protein of unknown function (DUF1295) pfam06968 1 BATS Biotin and Thiamin Synthesis associated domain pfam06972 6 DUF1296 Protein of unknown function (DUF1296) pfam06974 8 DUF1298 Protein of unknown function (DUF1298) pfam06978 1 POP1 Ribonucleases P/MRP protein subunit POP1 pfam06979 1 TMEM70 Assembly pfam06984 1 MRP-L47 Mitochondrial 39-S ribosomal protein L47 pfam06991 1 MFAP1 Microfibril-associated/Pre-mRNA processing pfam06999 4 Suc_Fer-like Sucrase/ferredoxin-like pfam07000 1 DUF1308 Protein of unknown function (DUF1308) pfam07001 1 BAT2_N BAT2 N-terminus pfam07002 9 Copine Copine pfam07011 7 DUF1313 Protein of unknown function (DUF1313) pfam07019 2 Rab5ip Rab5-interacting protein (Rab5ip) pfam07034 1 ORC3_N Origin recognition complex (ORC) subunit 3 pfam07035 1 Mic1 Colon cancer-associated protein Mic1-like pfam07039 1 DUF1325 SGF29 tudor-like domain pfam07047 3 OPA3 Optic atrophy 3 protein (OPA3) pfam07052 1 Hep_59 Hepatocellular carcinoma-associated antigen 59 pfam07058 6 MAP70 Microtubule-associated protein 70 pfam07059 16 DUF1336 Protein of unknown function (DUF1336) pfam07063 1 DUF1338 Domain of unknown function (DUF1338) pfam07064 1 RIC1 RIC1 pfam07065 1 D123 D123 pfam07072 1 DUF1342 Protein of unknown function (DUF1342) pfam07082 2 DUF1350 Protein of unknown function (DUF1350) pfam07086 1 Jagunal Jagunal pfam07093 1 SGT1 SGT1 protein pfam07103 1 DUF1365 Protein of unknown function (DUF1365) pfam07106 1 TBPIP Tat binding protein 1(TBP-1)-interacting protein pfam07107 3 WI12 Wound-induced protein WI12 pfam07109 1 Mg-por_mtran_C Magnesium-protoporphyrin IX pfam07123 2 PsbW Photosystem II reaction centre W protein (PsbW) pfam07137 1 VDE VDE lipocalin domain pfam07156 1 Prenylcys_lyase Prenylcysteine lyase pfam07160 1 SKA1 Spindle and kinetochore-associated protein 1 pfam07168 4 Ureide_permease Ureide permease pfam07172 4 GRP Glycine rich protein family pfam07173 3 GRDP-like Glycine-rich domain-containing protein-like pfam07174 3 FAP Fibronectin-attachment protein (FAP) pfam07189 3 SF3b10 Splicing factor 3B subunit 10 (SF3b10) pfam07200 2 Mod_r Modifier of rudimentary (Mod(r)) protein pfam07207 1 Lir1 Light regulated protein Lir1 pfam07223 4 DUF1421 Protein of unknown function (DUF1421) pfam07227 23 PHD_Oberon PHD - plant homeodomain finger protein pfam07228 1 SpoIIE Stage II sporulation protein E (SpoIIE) pfam07250 10 Glyoxal_oxid_N Glyoxal oxidase N-terminus pfam07264 1 EI24 Etoposide-induced protein 2 pfam07279 8 DUF1442 Protein of unknown function (DUF1442) pfam07287 1 DUF1446 Protein of unknown function (DUF1446) pfam07297 2 DPM2 Dolichol phosphate-mannose biosynthesis pfam07298 1 NnrU NnrU protein pfam07303 1 Occludin_ELL Occludin homology domain pfam07333 3 SLR1-BP S locus-related glycoprotein 1 binding pollen pfam07343 1 DUF1475 Protein of unknown function (DUF1475) pfam07376 1 Prosystemin Prosystemin pfam07386 1 DUF1499 Protein of unknown function (DUF1499) pfam07393 6 Sec10 Exocyst complex component Sec10 pfam07423 2 DUF1510 Protein of unknown function (DUF1510) pfam07466 3 DUF1517 Protein of unknown function (DUF1517) pfam07478 2 Dala_Dala_lig_C D-ala D-ala ligase C-terminus pfam07479 3 NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate pfam07491 1 PPI_Ypi1 Protein phosphatase inhibitor pfam07496 7 zf-CW CW-type Zinc Finger pfam07498 1 Rho_N Rho termination factor pfam07500 3 TFIIS_M Transcription factor S-II (TFIIS) pfam07516 1 SecA_SW SecA Wing and Scaffold domain pfam07517 3 SecA_DEAD SecA DEAD-like domain pfam07522 3 DRMBL DNA repair metallo-beta-lactamase pfam07524 1 Bromo_TP Bromodomain associated pfam07526 14 POX Associated with HOX pfam07529 1 HSA HSA pfam07534 6 TLD TLD pfam07539 1 DRIM Down-regulated in metastasis pfam07540 1 NOC3p Nucleolar complex-associated protein pfam07541 1 EIF_2_alpha Eukaryotic translation initiation factor 2 pfam07542 1 ATP12 ATP12 chaperone protein pfam07569 1 Hira TUP1-like enhancer of split pfam07571 2 TAF6_C TAF6 C-terminal HEAT repeat domain pfam07572 1 BCNT Bucentaur or craniofacial development pfam07574 1 SMC_Nse1 Nse1 non-SMC component of SMC5-6 complex pfam07575 1 Nucleopor_Nup85 Nup85 Nucleoporin pfam07576 3 BRAP2 BRCA1-associated protein 2 pfam07647 1 SAM_2 SAM domain (Sterile alpha motif) pfam07651 17 ANTH ANTH domain pfam07676 1 PD40 WD40-like Beta Propeller Repeat pfam07690 45 MFS_1 Major Facilitator Superfamily pfam07707 2 BACK BTB And C-terminal Kelch pfam07712 2 SURNod19 Stress up-regulated Nod 19 pfam07713 1 DUF1604 Protein of unknown function (DUF1604) pfam07714 467 Pkinase_Tyr Protein tyrosine kinase pfam07716 2 bZIP_2 Basic region leucine zipper pfam07717 5 OB_NTP_bind Oligonucleotide/oligosaccharide-binding pfam07722 6 Peptidase_C26 Peptidase C26 pfam07724 12 AAA_2 AAA domain (Cdc48 subfamily) pfam07727 13 RVT_2 Reverse transcriptase (RNA-dependent DNA pfam07728 1 AAA_5 AAA domain (dynein-related subfamily) pfam07729 1 FCD FCD domain pfam07731 7 Cu-oxidase_2 Multicopper oxidase pfam07732 35 Cu-oxidase_3 Multicopper oxidase pfam07734 5 FBA_1 F-box associated pfam07738 2 Sad1_UNC Sad1 / UNC-like C-terminal pfam07741 2 BRF1 Brf1-like TBP-binding domain pfam07743 2 HSCB_C HSCB C-terminal oligomerization domain pfam07744 5 SPOC SPOC domain pfam07763 1 FEZ FEZ-like protein pfam07765 12 KIP1 KIP1-like protein pfam07766 4 LETM1 LETM1-like protein pfam07767 2 Nop53 Nop53 (60S ribosomal biogenesis) pfam07774 1 DUF1620 Protein of unknown function (DUF1620) pfam07777 4 MFMR G-box binding protein MFMR pfam07779 3 Cas1_AcylT 10 TM Acyl Transferase domain found in pfam07780 3 Spb1_C Spb1 C-terminal domain pfam07786 1 DUF1624 Protein of unknown function (DUF1624) pfam07795 4 DUF1635 Protein of unknown function (DUF1635) pfam07797 8 DUF1639 Protein of unknown function (DUF1639) pfam07798 3 DUF1640 Protein of unknown function (DUF1640) pfam07800 8 DUF1644 Protein of unknown function (DUF1644) pfam07802 2 GCK GCK domain pfam07808 1 RED_N RED-like protein N-terminal region pfam07814 1 WAPL Wings apart-like protein regulation of pfam07816 12 DUF1645 Protein of unknown function (DUF1645) pfam07817 1 GLE1 GLE1-like protein pfam07818 1 HCNGP HCNGP-like protein pfam07819 1 PGAP1 PGAP1-like protein pfam07821 5 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet pfam07837 3 FTCD_N Formiminotransferase domain pfam07839 8 CaM_binding Plant calmodulin-binding domain pfam07842 2 GCFC GC-rich sequence DNA-binding factor-like protein pfam07847 7 PCO_ADO PCO_ADO pfam07851 1 TMPIT TMPIT-like protein pfam07855 3 ATG101 Autophagy-related protein 101 pfam07859 43 Abhydrolase_3 alpha/beta hydrolase fold pfam07876 3 Dabb Stress responsive A/B Barrel Domain pfam07884 1 VKOR Vitamin K epoxide reductase family pfam07885 6 Ion_trans_2 Ion channel pfam07887 12 Calmodulin_bind Calmodulin binding protein-like pfam07888 1 CALCOCO1 Calcium binding and coiled-coil domain pfam07889 3 DUF1664 Protein of unknown function (DUF1664) pfam07890 1 Rrp15p Rrp15p pfam07891 7 DUF1666 Protein of unknown function (DUF1666) pfam07896 1 DUF1674 Protein of unknown function (DUF1674) pfam07899 12 Frigida Frigida-like protein pfam07904 1 Eaf7 Chromatin modification-related protein EAF7 pfam07910 2 Peptidase_C78 Peptidase family C78 pfam07911 16 DUF1677 Protein of unknown function (DUF1677) pfam07915 1 PRKCSH Glucosidase II beta subunit-like protein pfam07918 1 CAP160 CAP160 repeat pfam07926 1 TPR_MLP1_2 TPR/MLP1/MLP2-like protein pfam07928 2 Vps54 Vps54-like protein pfam07933 3 DUF1681 Protein of unknown function (DUF1681) pfam07934 1 OGG_N 8-oxoguanine DNA glycosylase pfam07939 4 DUF1685 Protein of unknown function (DUF1685) pfam07942 1 N2227 N2227-like protein pfam07944 2 Glyco_hydro_127 Beta-L-arabinofuranosidase pfam07946 2 DUF1682 Protein of unknown function (DUF1682) pfam07959 1 Fucokinase L-fucokinase pfam07962 1 Swi3 Replication Fork Protection Component Swi3 pfam07967 2 zf-C3HC C3HC zinc finger-like pfam07969 1 Amidohydro_3 Amidohydrolase family pfam07970 5 COPIIcoated_ERV Endoplasmic reticulum vesicle pfam07977 1 FabA FabA-like domain pfam07978 1 NIPSNAP NIPSNAP pfam07983 19 X8 X8 domain pfam07985 3 SRR1 SRR1 pfam07986 2 TBCC Tubulin binding cofactor C pfam07990 5 NABP Nucleic acid binding protein NABP pfam07992 25 Pyr_redox_2 Pyridine nucleotide-disulphide pfam07993 11 NAD_binding_4 Male sterility protein pfam07994 4 NAD_binding_5 Myo-inositol-1-phosphate synthase pfam07995 3 GSDH Glucose / Sorbosone dehydrogenase pfam08022 5 FAD_binding_8 FAD-binding domain pfam08030 7 NAD_binding_6 Ferric reductase NAD binding domain pfam08031 4 BBE Berberine and berberine like pfam08033 1 Sec23_BS Sec23/Sec24 beta-sandwich domain pfam08038 2 Tom7 TOM7 family pfam08059 3 SEP SEP domain pfam08068 1 DKCLD DKCLD (NUC011) domain pfam08069 5 Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain pfam08079 2 Ribosomal_L30_N Ribosomal L30 N-terminal domain pfam08083 1 PROCN PROCN (NUC071) domain pfam08084 1 PROCT PROCT (NUC072) domain pfam08122 1 NDUF_B12 NADH-ubiquinone oxidoreductase B12 subunit pfam08132 3 AdoMetDC_leader S-adenosyl-l-methionine decarboxylase pfam08137 1 DVL DVL family pfam08144 1 CPL CPL (NUC119) domain pfam08145 1 BOP1NT BOP1NT (NUC169) domain pfam08146 1 BP28CT BP28CT (NUC211) domain pfam08148 2 DSHCT DSHCT (NUC185) domain pfam08149 1 BING4CT BING4CT (NUC141) domain pfam08153 2 NGP1NT NGP1NT (NUC091) domain pfam08154 2 NLE NLE (NUC135) domain pfam08155 2 NOGCT NOGCT (NUC087) domain pfam08159 1 NUC153 NUC153 domain pfam08161 2 NUC173 NUC173 domain pfam08167 1 RIX1 rRNA processing/ribosome biogenesis pfam08170 1 POPLD POPLD (NUC188) domain pfam08172 2 CASP_C CASP C terminal pfam08186 3 Wound_ind Wound-inducible basic protein family pfam08207 2 EFP_N Elongation factor P (EF-P) KOW-like domain pfam08208 2 RNA_polI_A34 DNA-directed RNA polymerase I subunit pfam08209 1 Sgf11 Sgf11 (transcriptional regulation protein) pfam08211 1 dCMP_cyt_deam_2 Cytidine and deoxycytidylate deaminase pfam08212 2 Lipocalin_2 Lipocalin-like domain pfam08214 4 HAT_KAT11 Histone acetylation protein pfam08216 1 CTNNBL Catenin-beta-like pfam08217 1 DUF1712 Fungal domain of unknown function (DUF1712) pfam08221 2 HTH_9 RNA polymerase III subunit RPC82 pfam08231 3 SYF2 SYF2 splicing factor pfam08234 2 Spindle_Spc25 Chromosome segregation protein Spc25 pfam08235 3 LNS2 LNS2 (Lipin/Ned1/Smp2) pfam08240 17 ADH_N Alcohol dehydrogenase GroES-like domain pfam08241 13 Methyltransf_11 Methyltransferase domain pfam08242 3 Methyltransf_12 Methyltransferase domain pfam08243 1 SPT2 SPT2 chromatin protein pfam08245 4 Mur_ligase_M Mur ligase middle domain pfam08263 15 LRRNT_2 Leucine rich repeat N-terminal domain pfam08265 1 YL1_C YL1 nuclear protein C-terminal domain pfam08268 15 FBA_3 F-box associated domain pfam08271 1 TF_Zn_Ribbon TFIIB zinc-binding pfam08282 1 Hydrolase_3 haloacid dehalogenase-like hydrolase pfam08285 1 DPM3 Dolichol-phosphate mannosyltransferase subunit 3 pfam08288 1 PIGA PIGA (GPI anchor biosynthesis) pfam08292 1 RNA_pol_Rbc25 RNA polymerase III subunit Rpc25 pfam08293 2 MRP-S33 Mitochondrial ribosomal subunit S27 pfam08294 1 TIM21 TIM21 pfam08311 3 Mad3_BUB1_I Mad3/BUB1 homology region 1 pfam08312 1 cwf21 cwf21 domain pfam08314 1 Sec39 Secretory pathway protein Sec39 pfam08315 2 cwf18 cwf18 pre-mRNA splicing factor pfam08317 1 Spc7 Spc7 kinetochore protein pfam08318 1 COG4 COG4 transport protein pfam08320 1 PIG-X PIG-X / PBN1 pfam08321 1 PPP5 PPP5 TPR repeat region pfam08323 7 Glyco_transf_5 Starch synthase catalytic domain pfam08324 1 PUL PUL domain pfam08325 2 WLM WLM domain pfam08326 1 ACC_central Acetyl-CoA carboxylase pfam08328 1 ASL_C Adenylosuccinate lyase C-terminal pfam08356 2 EF_assoc_2 EF hand associated pfam08367 1 M16C_assoc Peptidase M16C associated pfam08370 1 PDR_assoc Plant PDR ABC transporter associated pfam08372 16 PRT_C Plant phosphoribosyltransferase C-terminal pfam08373 1 RAP RAP domain pfam08375 1 Rpn3_C Proteasome regulatory subunit C-terminal pfam08381 11 BRX Transcription factor regulating root and shoot growth pfam08387 3 FBD FBD pfam08389 4 Xpo1 Exportin 1-like protein pfam08392 23 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like pfam08414 2 NADPH_Ox Respiratory burst NADPH oxidase pfam08417 3 PaO Pheophorbide a oxygenase pfam08423 6 Rad51 Rad51 pfam08424 1 NRDE-2 NRDE-2 pfam08433 1 KTI12 Chromatin associated protein KTI12 pfam08442 1 ATP-grasp_2 ATP-grasp domain pfam08449 7 UAA UAA transporter family pfam08477 1 Roc Ras of Complex pfam08479 1 POTRA_2 POTRA domain pfam08490 1 DUF1744 Domain of unknown function (DUF1744) pfam08491 4 SE Squalene epoxidase pfam08492 2 SRP72 SRP72 RNA-binding domain pfam08498 5 Sterol_MT_C Sterol methyltransferase C-terminal pfam08501 1 Shikimate_dh_N Shikimate dehydrogenase substrate pfam08507 1 COPI_assoc COPI associated protein pfam08510 1 PIG-P PIG-P pfam08511 1 COQ9 COQ9 pfam08512 1 Rtt106 Histone chaperone Rttp106-like pfam08514 1 STAG STAG domain pfam08519 1 RFC1 Replication factor RFC1 C terminal domain pfam08523 5 MBF1 Multiprotein bridging factor 1 pfam08524 1 rRNA_processing rRNA processing pfam08534 3 Redoxin Redoxin pfam08536 2 Whirly Whirly transcription factor pfam08538 1 DUF1749 Protein of unknown function (DUF1749) pfam08540 4 HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A pfam08541 2 ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] pfam08542 3 Rep_fac_C Replication factor C C-terminal domain pfam08543 1 Phos_pyr_kin Phosphomethylpyrimidine kinase pfam08547 2 CIA30 Complex I intermediate-associated protein 30 pfam08551 1 DUF1751 Eukaryotic integral membrane protein (DUF1751) pfam08553 3 VID27 VID27 cytoplasmic protein pfam08555 1 DUF1754 Eukaryotic family of unknown function pfam08557 1 Lipid_DES Sphingolipid Delta4-desaturase (DES) pfam08561 2 Ribosomal_L37 Mitochondrial ribosomal protein L37 pfam08568 1 Kinetochor_Ybp2 Uncharacterized protein family pfam08569 4 Mo25 Mo25-like pfam08571 1 Yos1 Yos1-like pfam08572 2 PRP3 pre-mRNA processing factor 3 (PRP3) pfam08574 1 Iwr1 Transcription factor Iwr1 pfam08576 1 DUF1764 Eukaryotic protein of unknown function pfam08580 2 KAR9 Yeast cortical protein KAR9 pfam08583 2 Cmc1 Cytochrome c oxidase biogenesis protein Cmc1 like pfam08585 2 RMI1_N RecQ mediated genome instability protein pfam08590 4 DUF1771 Domain of unknown function (DUF1771) pfam08597 1 eIF3_subunit Translation initiation factor eIF3 pfam08606 1 Prp19 Prp19/Pso4-like pfam08609 2 Fes1 Nucleotide exchange factor Fes1 pfam08610 2 Pex16 Peroxisomal membrane protein (Pex16) pfam08612 14 Med20 TATA-binding related factor (TRF) of subunit 20 pfam08613 6 Cyclin Cyclin pfam08614 1 ATG16 Autophagy protein 16 (ATG16) pfam08615 1 RNase_H2_suC Ribonuclease H2 non-catalytic subunit pfam08616 1 SPA Stabilization of polarity axis pfam08617 1 CGI-121 Kinase binding protein CGI-121 pfam08620 1 RPAP1_C RPAP1-like pfam08623 1 TIP120 TATA-binding protein interacting (TIP20) pfam08625 1 Utp13 Utp13 specific WD40 associated domain pfam08626 1 TRAPPC9-Trs120 Transport protein Trs120 or TRAPPC9 pfam08627 2 CRT-like CRT-like pfam08628 1 Nexin_C Sorting nexin C terminal pfam08631 1 SPO22 Meiosis protein SPO22/ZIP4 like pfam08637 1 NCA2 ATP synthase regulation protein NCA2 pfam08638 1 Med14 Mediator complex subunit MED14 pfam08640 1 U3_assoc_6 U3 small nucleolar RNA-associated protein 6 pfam08642 1 Rxt3 Histone deacetylation protein Rxt3 pfam08644 3 SPT16 FACT complex subunit (SPT16/CDC68) pfam08645 1 PNK3P Polynucleotide kinase 3 phosphatase pfam08646 5 Rep_fac-A_C Replication factor-A C terminal domain pfam08648 4 DUF1777 Protein of unknown function (DUF1777) pfam08652 1 RAI1 RAI1 like PD-(D/E)XK nuclease pfam08660 1 Alg14 Oligosaccharide biosynthesis protein Alg14 like pfam08661 2 Rep_fac-A_3 Replication factor A protein 3 pfam08662 2 eIF2A Eukaryotic translation initiation factor eIF2A pfam08669 1 GCV_T_C Glycine cleavage T-protein C-terminal barrel pfam08670 6 MEKHLA MEKHLA domain pfam08672 1 ANAPC2 Anaphase promoting complex (APC) subunit 2 pfam08676 1 MutL_C MutL C terminal dimerisation domain pfam08694 1 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 pfam08696 2 Dna2 DNA replication factor Dna2 pfam08698 1 Fcf2 Fcf2 pre-rRNA processing pfam08700 4 Vps51 Vps51/Vps67 pfam08701 2 GN3L_Grn1 GNL3L/Grn1 putative GTPase pfam08704 3 GCD14 tRNA methyltransferase complex GCD14 subunit pfam08711 6 Med26 TFIIS helical bundle-like domain pfam08712 1 Nfu_N Scaffold protein Nfu/NifU N terminal pfam08713 1 DNA_alkylation DNA alkylation repair enzyme pfam08718 5 GLTP Glycolipid transfer protein (GLTP) pfam08719 1 DUF1768 Domain of unknown function (DUF1768) pfam08729 1 HUN HPC2 and ubinuclein domain pfam08731 1 AFT Transcription factor AFT pfam08737 1 Rgp1 Rgp1 pfam08743 3 Nse4_C Nse4 C-terminal pfam08750 1 CNP1 CNP1-like family pfam08755 1 YccV-like Hemimethylated DNA-binding protein YccV like pfam08766 4 DEK_C DEK C terminal domain pfam08767 1 CRM1_C CRM1 C terminal pfam08768 2 DUF1794 Domain of unknown function (DUF1794) pfam08772 1 NOB1_Zn_bind Nin one binding (NOB1) Zn-ribbon like pfam08774 1 VRR_NUC VRR-NUC domain pfam08777 1 RRM_3 RNA binding motif pfam08781 2 DP Transcription factor DP pfam08783 4 DWNN DWNN domain pfam08784 2 RPA_C Replication protein A C terminal pfam08785 2 Ku_PK_bind Ku C terminal domain like pfam08787 1 Alginate_lyase2 Alginate lyase pfam08790 1 zf-LYAR LYAR-type C2HC zinc finger pfam08799 1 PRP4 pre-mRNA processing factor 4 (PRP4) like pfam08801 2 Nucleoporin_N Nup133 N terminal like pfam08802 1 CytB6-F_Fe-S Cytochrome B6-F complex Fe-S subunit pfam08806 1 Sep15_SelM Sep15/SelM redox domain pfam08839 1 CDT1 DNA replication factor CDT1 like pfam08847 1 DUF1817 Domain of unknown function (DUF1817) pfam08879 17 WRC WRC pfam08920 1 SF3b1 Splicing factor 3B subunit 1 pfam09079 1 Cdc6_C CDC6 pfam09088 1 MIF4G_like MIF4G like pfam09103 1 BRCA-2_OB1 BRCA2 pfam09133 2 SANTA SANTA (SANT Associated) pfam09138 1 Urm1 Urm1 (Ubiquitin related modifier) pfam09139 1 Mmp37 Mitochondrial matrix Mmp37 pfam09173 3 eIF2_C Initiation factor eIF2 gamma pfam09174 1 Maf1 Maf1 regulator pfam09177 3 Syntaxin-6_N Syntaxin 6 pfam09180 3 ProRS-C_1 Prolyl-tRNA synthetase pfam09184 1 PPP4R2 PPP4R2 pfam09187 5 DUF1950 Domain of unknown function(DUF1950) pfam09192 1 Act-Frag_cataly Actin-fragmin kinase pfam09229 1 Aha1_N Activator of Hsp90 ATPase pfam09239 1 Topo-VIb_trans Topoisomerase VI B subunit pfam09243 1 Rsm22 Mitochondrial small ribosomal subunit Rsm22 pfam09253 4 Ole-e-6 Pollen allergen ole e 6 pfam09258 3 Glyco_transf_64 Glycosyl transferase family 64 domain pfam09265 8 Cytokin-bind Cytokinin dehydrogenase 1 pfam09273 5 Rubis-subs-bind Rubisco LSMT substrate-binding pfam09280 4 XPC-binding XPC-binding domain pfam09282 1 Mago-bind Mago binding pfam09285 1 Elong-fact-P_C Elongation factor P pfam09298 1 FAA_hydrolase_N Fumarylacetoacetase N-terminal pfam09325 1 Vps5 Vps5 C terminal like pfam09328 1 Phytochelatin_C Domain of unknown function (DUF1984) pfam09329 1 zf-primase Primase zinc finger pfam09331 52 DUF1985 Domain of unknown function (DUF1985) pfam09333 1 ATG_C Autophagy-related protein C terminal domain pfam09334 2 tRNA-synt_1g tRNA synthetases class I (M) pfam09335 9 SNARE_assoc SNARE associated Golgi protein pfam09340 2 NuA4 Histone acetyltransferase subunit NuA4 pfam09341 1 Pcc1 Transcription factor Pcc1 pfam09348 1 DUF1990 Domain of unknown function (DUF1990) pfam09350 1 DUF1992 Domain of unknown function (DUF1992) pfam09353 4 DUF1995 Domain of unknown function (DUF1995) pfam09360 1 zf-CDGSH Iron-binding zinc finger CDGSH type pfam09366 4 DUF1997 Protein of unknown function (DUF1997) pfam09368 2 Sas10 Sas10 C-terminal domain pfam09377 1 SBDS_C SBDS protein C-terminal domain pfam09382 1 RQC RQC domain pfam09384 1 UTP15_C UTP15 C terminal pfam09402 1 MSC Man1-Src1p-C-terminal domain pfam09405 2 Btz CASC3/Barentsz eIF4AIII binding pfam09409 3 PUB PUB domain pfam09412 1 XendoU Endoribonuclease XendoU pfam09415 1 CENP-X CENP-S associating Centromere protein X pfam09416 1 UPF1_Zn_bind RNA helicase (UPF2 interacting domain) pfam09419 2 PGP_phosphatase Mitochondrial PGP phosphatase pfam09420 1 Nop16 Ribosome biogenesis protein Nop16 pfam09425 1 CCT_2 Divergent CCT motif pfam09429 1 Wbp11 WW domain binding protein 11 pfam09430 2 DUF2012 Protein of unknown function (DUF2012) pfam09439 2 SRPRB Signal recognition particle receptor beta pfam09440 1 eIF3_N eIF3 subunit 6 N terminal domain pfam09445 2 Methyltransf_15 RNA cap guanine-N2 methyltransferase pfam09446 1 VMA21 VMA21-like domain pfam09451 1 ATG27 Autophagy-related protein 27 pfam09459 2 EB_dh Ethylbenzene dehydrogenase pfam09468 1 RNase_H2-Ydr279 Ydr279p protein family (RNase H2 pfam09496 1 CENP-O Cenp-O kinetochore centromere component pfam09497 1 Med12 Transcription mediator complex subunit Med12 pfam09507 1 CDC27 DNA polymerase subunit Cdc27 pfam09531 1 Ndc1_Nup Nucleoporin protein Ndc1-Nup pfam09585 1 Lin0512_fam Conserved hypothetical protein pfam09588 1 YqaJ YqaJ-like viral recombinase domain pfam09597 1 IGR IGR protein motif pfam09606 3 Med15 ARC105 or Med15 subunit of Mediator complex pfam09668 1 Asp_protease Aspartyl protease pfam09696 1 Ctf8 Ctf8 pfam09713 10 A_thal_3526 Plant protein 1589 of unknown function pfam09724 1 DUF2036 Uncharacterized conserved protein (DUF2036) pfam09725 1 Fra10Ac1 Folate-sensitive fragile site protein pfam09726 2 Macoilin Transmembrane protein pfam09728 1 Taxilin Myosin-like coiled-coil protein pfam09731 2 Mitofilin Mitochondrial inner membrane protein pfam09732 1 CactinC_cactus Cactus-binding C-terminus of cactin pfam09733 1 VEFS-Box VEFS-Box of polycomb protein pfam09734 1 Tau95 RNA polymerase III transcription factor (TF)IIIC pfam09735 1 Nckap1 Membrane-associated apoptosis protein pfam09736 1 Bud13 Pre-mRNA-splicing factor of RES complex pfam09737 1 Det1 De-etiolated protein 1 Det1 pfam09739 3 MCM_bind Mini-chromosome maintenance replisome factor pfam09740 1 DUF2043 Uncharacterized conserved protein (DUF2043) pfam09741 1 DUF2045 Uncharacterized conserved protein (DUF2045) pfam09742 1 Dymeclin Dyggve-Melchior-Clausen syndrome protein pfam09743 1 DUF2042 Uncharacterized conserved protein (DUF2042) pfam09745 1 DUF2040 Coiled-coil domain-containing protein 55 pfam09747 1 DUF2052 Coiled-coil domain containing protein pfam09748 1 Med10 Transcription factor subunit Med10 of Mediator pfam09749 1 HVSL Uncharacterized conserved protein pfam09750 2 DRY_EERY Alternative splicing regulator pfam09751 1 Es2 Nuclear protein Es2 pfam09752 1 DUF2048 Abhydrolase domain containing 18 pfam09753 2 Use1 Membrane fusion protein Use1 pfam09754 1 PAC2 PAC2 family pfam09756 1 DDRGK DDRGK domain pfam09758 1 FPL Uncharacterized conserved protein pfam09759 1 Atx10homo_assoc Spinocerebellar ataxia type 10 protein pfam09763 2 Sec3_C Exocyst complex component Sec3 pfam09764 1 Nt_Gln_amidase N-terminal glutamine amidase pfam09765 1 WD-3 WD-repeat region pfam09766 1 FimP Fms-interacting protein pfam09768 1 Peptidase_M76 Peptidase M76 family pfam09770 33 PAT1 Topoisomerase II-associated protein PAT1 pfam09775 1 Keratin_assoc Keratinocyte-associated protein 2 pfam09778 1 Guanylate_cyc_2 Guanylylate cyclase pfam09783 2 Vac_ImportDeg Vacuolar import and degradation protein pfam09786 1 CytochromB561_N Cytochrome B561 pfam09787 1 Golgin_A5 Golgin subfamily A member 5 pfam09790 2 Hyccin Hyccin pfam09791 1 Oxidored-like Oxidoreductase-like protein pfam09793 2 AD Anticodon-binding domain pfam09797 2 NatB_MDM20 N-acetyltransferase B complex (NatB) non pfam09801 2 SYS1 Integral membrane protein S linking to the trans pfam09805 1 Nop25 Nucleolar protein 12 (25kDa) pfam09807 1 ELP6 Elongation complex protein 6 pfam09808 1 SNAPc_SNAP43 Small nuclear RNA activating complex pfam09809 1 MRP-L27 Mitochondrial ribosomal protein L27 pfam09810 1 Exo5 Exonuclease V - a 5' deoxyribonuclease pfam09811 2 Yae1_N Essential protein Yae1 pfam09816 1 EAF RNA polymerase II transcription elongation factor pfam10018 1 Med4 Vitamin-D-receptor interacting Mediator subunit 4 pfam10033 2 ATG13 Autophagy-related protein 13 pfam10046 2 BLOC1_2 Biogenesis of lysosome-related organelles pfam10058 2 zinc_ribbon_10 Predicted integral membrane zinc-ribbon pfam10063 1 DUF2301 Uncharacterized integral membrane protein pfam10075 3 CSN8_PSD8_EIF3K CSN8/PSMD8/EIF3K family pfam10143 1 PhosphMutase 2 pfam10150 1 RNase_E_G Ribonuclease E/G family pfam10151 1 TMEM214 TMEM214 pfam10153 1 Efg1 rRNA-processing protein Efg1 pfam10155 1 DUF2363 Uncharacterized conserved protein (DUF2363) pfam10159 1 MMtag Kinase phosphorylation protein pfam10160 2 Tmemb_40 Predicted membrane protein pfam10163 1 EnY2 Transcription factor e(y)2 pfam10167 5 NEP Uncharacterized conserved protein pfam10172 2 DDA1 Det1 complexing ubiquitin ligase pfam10173 2 Mit_KHE1 Mitochondrial K+-H+ exchange-related pfam10178 1 PAC3 Proteasome assembly chaperone 3 pfam10181 1 PIG-H GPI-GlcNAc transferase complex pfam10184 4 DUF2358 Uncharacterized conserved protein (DUF2358) pfam10186 1 Atg14 Vacuolar sorting 38 and autophagy-related subunit pfam10187 1 Nefa_Nip30_N N-terminal domain of NEFA-interacting pfam10189 1 Ints3 Integrator complex subunit 3 pfam10191 1 COG7 Golgi complex component 7 (COG7) pfam10193 1 Telomere_reg-2 Telomere length regulation protein pfam10199 1 Adaptin_binding Alpha and gamma adaptin binding protein pfam10203 1 Pet191_N Cytochrome c oxidase assembly protein pfam10213 1 MRP-S28 Mitochondrial ribosomal subunit protein pfam10215 1 Ost4 Oligosaccaryltransferase pfam10217 1 DUF2039 Uncharacterized conserved protein (DUF2039) pfam10218 1 DUF2054 Uncharacterized conserved protein (DUF2054) pfam10220 1 Smg8_Smg9 Smg8_Smg9 pfam10225 2 NEMP NEMP family pfam10230 1 LIDHydrolase Lipid-droplet associated hydrolase pfam10235 1 Cript Microtubule-associated protein CRIPT pfam10236 1 DAP3 Mitochondrial ribosomal death-associated protein pfam10237 1 N6-adenineMlase Probable N6-adenine methyltransferase pfam10238 1 Eapp_C E2F-associated phosphoprotein pfam10241 1 KxDL Uncharacterized conserved protein pfam10243 4 MIP-T3 Microtubule-binding protein MIP-T3 pfam10247 1 Romo1 Reactive mitochondrial oxygen species modulator pfam10248 3 Mlf1IP Myelodysplasia-myeloid leukemia factor pfam10249 1 NDUFB10 NADH-ubiquinone oxidoreductase subunit 10 pfam10250 37 O-FucT GDP-fucose protein O-fucosyltransferase pfam10251 1 PEN-2 Presenilin enhancer-2 subunit of gamma secretase pfam10252 1 PP28 Casein kinase substrate phosphoprotein PP28 pfam10253 1 PRCC Mitotic checkpoint regulator pfam10255 1 Paf67 RNA polymerase I-associated factor PAF67 pfam10258 1 RNA_GG_bind PHAX RNA-binding domain pfam10260 1 SAYSvFN Uncharacterized conserved domain (SAYSvFN) pfam10262 2 Rdx Rdx family pfam10269 3 Tmemb_185A Transmembrane Fragile-X-F protein pfam10270 1 MMgT Membrane magnesium transporter pfam10273 1 WGG Pre-rRNA-processing protein TSR2 pfam10275 1 Peptidase_C65 Peptidase C65 Otubain pfam10276 1 zf-CHCC Zinc-finger domain pfam10280 1 Med11 Mediator complex protein pfam10291 1 muHD Muniscin C-terminal mu homology domain pfam10294 10 Methyltransf_16 Lysine methyltransferase pfam10343 1 Q_salvage Potential Queuosine pfam10350 1 DUF2428 Putative death-receptor fusion protein (DUF2428) pfam10351 2 Apt1 Golgi-body localization protein domain pfam10354 1 DUF2431 Domain of unknown function (DUF2431) pfam10357 1 Kin17_mid Domain of Kin17 curved DNA-binding protein pfam10358 12 NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins pfam10367 3 Vps39_2 Vacuolar sorting protein 39 domain 2 pfam10369 3 ALS_ss_C Small subunit of acetolactate synthase pfam10373 3 EST1_DNA_bind Est1 DNA/RNA binding domain pfam10377 1 ATG11 Autophagy-related protein 11 pfam10382 1 DUF2439 Protein of unknown function (DUF2439) pfam10392 1 COG5 Golgi transport complex subunit 5 pfam10394 1 Hat1_N Histone acetyl transferase HAT1 N-terminus pfam10405 1 BHD_3 Rad4 beta-hairpin domain 3 pfam10406 1 TAF8_C Transcription factor TFIID complex subunit 8 pfam10408 2 Ufd2P_core Ubiquitin elongating factor core pfam10409 4 PTEN_C2 C2 domain of PTEN tumor-suppressor protein pfam10415 1 FumaraseC_C Fumarase C C-terminus pfam10419 1 TFIIIC_sub6 TFIIIC subunit pfam10428 2 SOG2 RAM signalling pathway protein pfam10433 3 MMS1_N Mono-functional DNA-alkylating methyl pfam10436 2 BCDHK_Adom3 Mitochondrial branched-chain alpha-ketoacid pfam10440 5 WIYLD Ubiquitin-binding WIYLD domain pfam10441 1 Urb2 Urb2/Npa2 family pfam10446 5 DUF2457 Protein of unknown function (DUF2457) pfam10447 1 EXOSC1 Exosome component EXOSC1/CSL4 pfam10453 1 NUFIP1 Nuclear fragile X mental retardation-interacting pfam10459 1 Peptidase_S46 Peptidase S46 pfam10469 2 AKAP7_NLS AKAP7 2'5' RNA ligase-like domain pfam10473 1 CENP-F_leu_zip Leucine-rich repeats of kinetochore pfam10483 1 Elong_Iki1 Elongator subunit Iki1 pfam10487 1 Nup188 Nucleoporin subcomplex protein binding to Pom34 pfam10494 1 Stk19 Serine-threonine protein kinase 19 pfam10496 2 Syntaxin-18_N SNARE-complex protein Syntaxin-18 pfam10497 6 zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A pfam10502 2 Peptidase_S26 Signal peptidase pfam10509 1 GalKase_gal_bdg Galactokinase galactose-binding pfam10510 2 PIG-S Phosphatidylinositol-glycan biosynthesis class S pfam10513 4 EPL1 Enhancer of polycomb-like pfam10520 1 TMEM189_B_dmain B domain of TMEM189 pfam10536 167 PMD Plant mobile domain pfam10537 1 WAC_Acf1_DNA_bd ATP-utilising chromatin assembly and pfam10539 14 Dev_Cell_Death Development and cell death domain pfam10551 33 MULE MULE transposase domain pfam10557 1 Cullin_Nedd8 Cullin protein neddylation domain pfam10585 2 UBA_e1_thiolCys Ubiquitin-activating enzyme active pfam10601 1 zf-LITAF-like LITAF-like zinc ribbon domain pfam10602 2 RPN7 26S proteasome subunit RPN7 pfam10604 15 Polyketide_cyc2 Polyketide cyclase / dehydrase and pfam10607 6 CLTH CTLH/CRA C-terminal to LisH motif domain pfam10609 3 ParA NUBPL iron-transfer P-loop NTPase pfam10615 2 DUF2470 Protein of unknown function (DUF2470) pfam10639 1 TMEM234 Putative transmembrane family 234 pfam10644 1 Misat_Tub_SegII Misato Segment II tubulin-like domain pfam10664 1 NdhM Cyanobacterial and plastid NDH-1 subunit M pfam10674 1 Ycf54 Protein of unknown function (DUF2488) pfam10693 2 DUF2499 Protein of unknown function (DUF2499) pfam10699 1 HAP2-GCS1 Male gamete fusion factor pfam10705 10 Ycf15 Chloroplast protein precursor Ycf15 putative pfam10712 1 NAD-GH NAD-specific glutamate dehydrogenase pfam10714 1 LEA_6 Late embryogenesis abundant protein 18 pfam10716 1 NdhL NADH dehydrogenase transmembrane subunit pfam10780 1 MRP_L53 39S ribosomal protein L53/MRP-L53 pfam10785 1 NADH-u_ox-rdase NADH-ubiquinone oxidoreductase pfam10839 1 DUF2647 Protein of unknown function (DUF2647) pfam10890 2 Cyt_b-c1_8 Cytochrome b-c1 complex subunit 8 pfam10914 2 DUF2781 Protein of unknown function (DUF2781) pfam10950 4 Organ_specific Organ specific protein pfam10961 1 SelK_SelG Selenoprotein SelK_SelG pfam10996 1 Beta-Casp Beta-Casp domain pfam10998 1 DUF2838 Protein of unknown function (DUF2838) pfam11016 1 DUF2854 Protein of unknown function (DUF2854) pfam11069 1 DUF2870 Protein of unknown function (DUF2870) pfam11107 1 FANCF Fanconi anemia group F protein (FANCF) pfam11145 3 DUF2921 Protein of unknown function (DUF2921) pfam11152 2 CCB2_CCB4 Cofactor assembly of complex C subunit B pfam11153 1 DUF2931 Protein of unknown function (DUF2931) pfam11204 2 DUF2985 Protein of unknown function (DUF2985) pfam11210 1 DUF2996 Protein of unknown function (DUF2996) pfam11221 1 Med21 Subunit 21 of Mediator complex pfam11250 14 FAF Fantastic Four meristem regulator pfam11255 1 DUF3054 Protein of unknown function (DUF3054) pfam11262 1 Tho2 Transcription factor/nuclear export subunit protein pfam11264 1 ThylakoidFormat Thylakoid formation protein pfam11265 2 Med25_VWA Mediator complex subunit 25 von Willebrand pfam11267 1 DUF3067 Domain of unknown function (DUF3067) pfam11276 1 DUF3078 Protein of unknown function (DUF3078) pfam11282 1 DUF3082 Protein of unknown function (DUF3082) pfam11317 2 DUF3119 Protein of unknown function (DUF3119) pfam11326 2 DUF3128 Protein of unknown function (DUF3128) pfam11331 3 zinc_ribbon_12 Probable zinc-ribbon domain pfam11341 1 DUF3143 Protein of unknown function (DUF3143) pfam11347 1 DUF3148 Protein of unknown function (DUF3148) pfam11443 3 DUF2828 Domain of unknown function (DUF2828) pfam11460 1 DUF3007 Protein of unknown function (DUF3007) pfam11493 1 TSP9 Thylakoid soluble phosphoprotein TSP9 pfam11510 1 FA_FANCE Fanconi Anaemia group E protein FANCE pfam11523 4 DUF3223 Protein of unknown function (DUF3223) pfam11559 1 ADIP Afadin- and alpha -actinin-Binding pfam11566 1 PI31_Prot_N PI31 proteasome regulator N-terminal pfam11571 1 Med27 Mediator complex subunit 27 pfam11573 1 Med23 Mediator complex subunit 23 pfam11623 1 DUF3252 Protein of unknown function (DUF3252) pfam11707 1 Npa1 Ribosome 60S biogenesis N-terminal pfam11708 2 Slu7 Pre-mRNA splicing Prp18-interacting factor pfam11715 2 Nup160 Nucleoporin Nup120/160 pfam11718 1 CPSF73-100_C Pre-mRNA 3'-end-processing endonuclease pfam11744 16 ALMT Aluminium activated malate transporter pfam11789 1 zf-Nse Zinc-finger of the MIZ type in Nse subunit pfam11799 1 IMS_C impB/mucB/samB family C-terminal domain pfam11800 1 RP-C_C Replication protein C C-terminal region pfam11805 1 DUF3326 Protein of unknown function (DUF3326) pfam11815 2 DUF3336 Domain of unknown function (DUF3336) pfam11816 3 DUF3337 Domain of unknown function (DUF3337) pfam11817 1 Foie-gras_1 Foie gras liver health family 1 pfam11820 7 DUF3339 Protein of unknown function (DUF3339) pfam11831 1 Myb_Cef pre-mRNA splicing factor component pfam11833 4 CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like pfam11834 1 KHA KHA pfam11852 1 DUF3372 Domain of unknown function (DUF3372) pfam11875 1 DUF3395 Domain of unknown function (DUF3395) pfam11886 6 TOC159_MAD Translocase of chloroplast 159/132 pfam11891 9 RETICULATA-like Protein RETICULATA-related pfam11894 1 Nup192 Nuclear pore complex scaffold pfam11904 6 GPCR_chapero_1 GPCR-chaperone pfam11909 1 NdhN NADH-quinone oxidoreductase cyanobacterial subunit pfam11910 1 NdhO Cyanobacterial and plant NDH-1 subunit O pfam11916 2 Vac14_Fig4_bd Vacuolar protein 14 C-terminal Fig4p pfam11923 2 DUF3441 Domain of unknown function (DUF3441) pfam11926 21 DUF3444 Domain of unknown function (DUF3444) pfam11931 1 DUF3449 Domain of unknown function (DUF3449) pfam11935 2 DUF3453 Domain of unknown function (DUF3453) pfam11938 1 DUF3456 TLR4 regulator and MIR-interacting MSAP pfam11940 1 DUF3458 Domain of unknown function (DUF3458) pfam11947 2 DUF3464 Protein of unknown function (DUF3464) pfam11955 11 PORR Plant organelle RNA recognition domain pfam11957 1 efThoc1 THO complex subunit 1 transcription elongation pfam11960 3 DUF3474 Domain of unknown function (DUF3474) pfam11961 1 DUF3475 Domain of unknown function (DUF3475) pfam11969 2 DcpS_C Scavenger mRNA decapping enzyme C-term binding pfam11976 6 Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like pfam11998 2 DUF3493 Protein of unknown function (DUF3493) pfam12002 1 MgsA_C MgsA AAA+ ATPase C terminal pfam12009 1 Telomerase_RBD Telomerase ribonucleoprotein complex - pfam12014 2 DUF3506 Domain of unknown function (DUF3506) pfam12022 1 DUF3510 Domain of unknown function (DUF3510) pfam12023 5 DUF3511 Domain of unknown function (DUF3511) pfam12036 1 DUF3522 Protein of unknown function (DUF3522) pfam12037 2 DUF3523 Domain of unknown function (DUF3523) pfam12043 4 DUF3527 Domain of unknown function (DUF3527) pfam12046 1 CCB1 Cofactor assembly of complex C subunit B pfam12047 2 DNMT1-RFD Cytosine specific DNA methyltransferase pfam12049 2 DUF3531 Protein of unknown function (DUF3531) pfam12054 1 DUF3535 Domain of unknown function (DUF3535) pfam12056 6 DUF3537 Protein of unknown function (DUF3537) pfam12061 11 NB-LRR Late blight resistance protein R1 pfam12070 2 SCAI Protein SCAI pfam12076 11 Wax2_C WAX2 C-terminal domain pfam12095 1 CRR7 Protein CHLORORESPIRATORY REDUCTION 7 pfam12110 1 Nup96 Nuclear protein 96 pfam12128 11 DUF3584 Protein of unknown function (DUF3584) pfam12143 7 PPO1_KFDV Protein of unknown function (DUF_B2219) pfam12146 19 Hydrolase_4 Serine aminopeptidase pfam12157 1 DUF3591 Protein of unknown function (DUF3591) pfam12159 1 DUF3593 Protein of unknown function (DUF3593) pfam12165 11 Alfin Alfin pfam12166 1 Piezo_RRas_bdg Piezo non-specific cation channel pfam12174 5 RST RCD1-SRO-TAF4 (RST) plant domain pfam12204 1 DUF3598 Domain of unknown function (DUF3598) pfam12214 6 TPX2_importin Cell cycle regulated microtubule pfam12220 1 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa pfam12222 6 PNGaseA Peptide N-acetyl-beta-D-glucosaminyl pfam12230 2 PRP21_like_P Pre-mRNA splicing factor PRP21 like pfam12231 1 Rif1_N Rap1-interacting factor 1 N terminal pfam12234 1 Rav1p_C RAVE protein 1 C terminal pfam12248 1 Methyltransf_FA Farnesoic acid 0-methyl transferase pfam12251 1 zf-SNAP50_C snRNA-activating protein of 50kDa MW C pfam12253 1 CAF1A Chromatin assembly factor 1 subunit A pfam12263 1 DUF3611 Protein of unknown function (DUF3611) pfam12265 7 CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C pfam12276 1 DUF3617 Protein of unknown function (DUF3617) pfam12295 2 Symplekin_C Symplekin tight junction protein C pfam12313 3 NPR1_like_C NPR1/NIM1 like defense protein C terminal pfam12315 8 DA1-like Protein DA1 pfam12325 1 TMF_TATA_bd TATA element modulatory factor 1 TATA pfam12330 1 DUF3635 Domain of unknown function (DUF3635) pfam12341 1 Mcl1_mid Minichromosome loss protein pfam12348 2 CLASP_N CLASP N terminal pfam12352 3 V-SNARE_C Snare region anchored in the vesicle membrane pfam12353 2 eIF3g Eukaryotic translation initiation factor 3 pfam12357 13 PLD_C Phospholipase D C terminal pfam12368 1 Rhodanese_C Rhodanase C-terminal pfam12371 1 TMEM131_like Transmembrane protein 131-like pfam12394 1 DUF3657 Protein FAM135 pfam12422 1 Condensin2nSMC Condensin II non structural maintenance pfam12428 11 DUF3675 Protein of unknown function (DUF3675) pfam12430 1 ABA_GPCR Abscisic acid G-protein coupled receptor pfam12436 6 USP7_ICP0_bdg ICP0-binding domain of Ubiquitin-specific pfam12451 1 VPS11_C Vacuolar protein sorting protein 11 C terminal pfam12452 1 DUF3685 Protein of unknown function (DUF3685) pfam12481 9 DUF3700 Aluminium induced protein pfam12483 2 GIDE E3 Ubiquitin ligase pfam12490 3 BCAS3 Breast carcinoma amplified sequence 3 pfam12498 2 bZIP_C Basic leucine-zipper C terminal pfam12513 1 SUV3_C Mitochondrial degradasome RNA helicase subunit C pfam12527 1 DUF3727 Protein of unknown function (DUF3727) pfam12530 1 DUF3730 Protein of unknown function (DUF3730) pfam12542 1 CWC25 Pre-mRNA splicing factor pfam12554 2 MOZART1 Mitotic-spindle organizing gamma-tubulin ring pfam12569 2 NARP1 NMDA receptor-regulated protein 1 pfam12572 2 DUF3752 Protein of unknown function (DUF3752) pfam12576 2 DUF3754 Protein of unknown function (DUF3754) pfam12579 3 DUF3755 Protein of unknown function (DUF3755) pfam12584 1 TRAPPC10 Trafficking protein particle complex subunit 10 pfam12589 1 WBS_methylT Methyltransferase involved in pfam12609 11 DUF3774 Wound-induced protein pfam12612 1 TFCD_C Tubulin folding cofactor D C terminal pfam12617 1 LdpA_C Iron-Sulfur binding protein C terminal pfam12624 3 Chorein_N N-terminal region of Chorein or VPS13 pfam12627 1 PolyA_pol_RNAbd Probable RNA and SrmB- binding site of pfam12631 1 MnmE_helical MnmE helical domain pfam12638 3 Staygreen Staygreen protein pfam12643 2 MazG-like MazG-like family pfam12646 2 DUF3783 Domain of unknown function (DUF3783) pfam12656 1 G-patch_2 G-patch domain pfam12657 1 TFIIIC_delta Transcription factor IIIC subunit delta pfam12678 6 zf-rbx1 RING-H2 zinc finger domain pfam12680 1 SnoaL_2 SnoaL-like domain pfam12689 2 Acid_PPase Acid Phosphatase pfam12697 11 Abhydrolase_6 Alpha/beta hydrolase family pfam12698 1 ABC2_membrane_3 ABC-2 family transporter protein pfam12701 5 LSM14 Scd6-like Sm domain pfam12706 3 Lactamase_B_2 Beta-lactamase superfamily domain pfam12708 2 Pectate_lyase_3 Pectate lyase superfamily protein pfam12710 4 HAD haloacid dehalogenase-like hydrolase pfam12717 2 Cnd1 non-SMC mitotic condensation complex subunit 1 pfam12719 1 Cnd3 Nuclear condensing complex subunits pfam12738 4 PTCB-BRCT twin BRCT domain pfam12739 1 TRAPPC-Trs85 ER-Golgi trafficking TRAPP I complex 85 pfam12740 4 Chlorophyllase2 Chlorophyllase enzyme pfam12745 1 HGTP_anticodon2 Anticodon binding domain of tRNAs pfam12752 2 SUZ SUZ domain pfam12756 2 zf-C2H2_2 C2H2 type zinc-finger (2 copies) pfam12763 2 EF-hand_4 Cytoskeletal-regulatory complex EF hand pfam12766 1 Pyridox_oxase_2 Pyridoxamine 5'-phosphate oxidase pfam12767 4 SAGA-Tad1 Transcriptional regulator of RNA polII pfam12776 11 Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain pfam12790 1 T6SS-SciN Type VI secretion lipoprotein pfam12796 53 Ank_2 Ankyrin repeats (3 copies) pfam12807 4 eIF3_p135 Translation initiation factor eIF3 subunit pfam12812 2 PDZ_1 PDZ-like domain pfam12816 1 Vps8 Golgi CORVET complex core vacuolar protein 8 pfam12819 15 Malectin_like Carbohydrate-binding protein of the ER pfam12826 1 HHH_2 Helix-hairpin-helix motif pfam12830 1 Nipped-B_C Sister chromatid cohesion C-terminus pfam12831 1 FAD_oxidored FAD dependent oxidoreductase pfam12838 2 Fer4_7 4Fe-4S dicluster domain pfam12840 1 HTH_20 Helix-turn-helix domain pfam12848 2 ABC_tran_Xtn ABC transporter pfam12850 1 Metallophos_2 Calcineurin-like phosphoesterase pfam12854 1 PPR_1 PPR repeat pfam12859 1 ANAPC1 Anaphase-promoting complex subunit 1 pfam12861 1 zf-ANAPC11 Anaphase-promoting complex subunit 11 pfam12862 1 ANAPC5 Anaphase-promoting complex subunit 5 pfam12868 1 DUF3824 Domain of unknwon function (DUF3824) pfam12874 1 zf-met Zinc-finger of C2H2 type pfam12894 1 ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 pfam12895 2 ANAPC3 Anaphase-promoting complex pfam12896 1 ANAPC4 Anaphase-promoting complex pfam12899 10 Glyco_hydro_100 Alkaline and neutral invertase pfam12906 18 RINGv RING-variant domain pfam12907 3 zf-met2 Zinc-binding pfam12923 2 RRP7 Ribosomal RNA-processing protein 7 (RRP7) pfam12928 1 tRNA_int_end_N2 tRNA-splicing endonuclease subunit pfam12931 2 Sec16_C Sec23-binding domain of Sec16 pfam12936 1 Kri1_C KRI1-like family C-terminal pfam12937 15 F-box-like F-box-like pfam12968 1 DUF3856 Domain of Unknown Function (DUF3856) pfam12972 2 NAGLU_C Alpha-N-acetylglucosaminidase (NAGLU) pfam12998 2 ING Inhibitor of growth proteins N-terminal pfam12999 2 PRKCSH-like Glucosidase II beta subunit-like pfam13001 2 Ecm29 Proteasome stabilizer pfam13020 1 DUF3883 Domain of unknown function (DUF3883) pfam13023 2 HD_3 HD domain pfam13041 316 PPR_2 PPR repeat family pfam13085 4 Fer2_3 2Fe-2S iron-sulfur cluster binding domain pfam13087 14 AAA_12 AAA domain pfam13088 1 BNR_2 BNR repeat-like domain pfam13091 3 PLDc_2 PLD-like domain pfam13167 2 GTP-bdg_N GTP-binding GTPase N-terminal pfam13177 4 DNA_pol3_delta2 DNA polymerase III pfam13178 13 DUF4005 Protein of unknown function (DUF4005) pfam13225 2 DUF4033 Domain of unknown function (DUF4033) pfam13234 3 rRNA_proc-arch rRNA-processing arch domain pfam13236 1 CLU Clustered mitochondria pfam13238 2 AAA_18 AAA domain pfam13242 1 Hydrolase_like HAD-hyrolase-like pfam13243 6 SQHop_cyclase_C Squalene-hopene cyclase C-terminal pfam13246 2 Cation_ATPase Cation transport ATPase (P-type) pfam13249 2 SQHop_cyclase_N Squalene-hopene cyclase N-terminal pfam13251 1 DUF4042 Domain of unknown function (DUF4042) pfam13259 5 DUF4050 Protein of unknown function (DUF4050) pfam13266 4 DUF4057 Protein of unknown function (DUF4057) pfam13279 3 4HBT_2 Thioesterase-like superfamily pfam13292 3 DXP_synthase_N 1-deoxy-D-xylulose-5-phosphate synthase pfam13297 1 Telomere_Sde2_2 Telomere stability C-terminal pfam13301 2 DUF4079 Protein of unknown function (DUF4079) pfam13302 10 Acetyltransf_3 Acetyltransferase (GNAT) domain pfam13307 2 Helicase_C_2 Helicase C-terminal domain pfam13320 1 DUF4091 Domain of unknown function (DUF4091) pfam13324 1 GCIP Grap2 and cyclin-D-interacting pfam13325 3 MCRS_N N-terminal region of micro-spherule protein pfam13326 2 PSII_Pbs27 Photosystem II Pbs27 pfam13328 3 HD_4 HD domain pfam13334 1 DUF4094 Domain of unknown function (DUF4094) pfam13335 1 Mg_chelatase_C Magnesium chelatase pfam13339 1 AATF-Che1 Apoptosis antagonizing transcription factor pfam13343 1 SBP_bac_6 Bacterial extracellular solute-binding pfam13344 3 Hydrolase_6 Haloacid dehalogenase-like hydrolase pfam13347 4 MFS_2 MFS/sugar transport protein pfam13355 2 DUF4101 Protein of unknown function (DUF4101) pfam13359 12 DDE_Tnp_4 DDE superfamily endonuclease pfam13360 3 PQQ_2 PQQ-like domain pfam13365 10 Trypsin_2 Trypsin-like peptidase domain pfam13369 2 Transglut_core2 Transglutaminase-like superfamily pfam13378 1 MR_MLE_C Enolase C-terminal domain-like pfam13393 2 tRNA-synt_His Histidyl-tRNA synthetase pfam13398 3 Peptidase_M50B Peptidase M50B-like pfam13405 2 EF-hand_6 EF-hand domain pfam13409 2 GST_N_2 Glutathione S-transferase pfam13410 2 GST_C_2 Glutathione S-transferase pfam13414 3 TPR_11 TPR repeat pfam13415 4 Kelch_3 Galactose oxidase pfam13417 48 GST_N_3 Glutathione S-transferase pfam13418 1 Kelch_4 Galactose oxidase pfam13419 9 HAD_2 Haloacid dehalogenase-like hydrolase pfam13424 8 TPR_12 Tetratricopeptide repeat pfam13426 3 PAS_9 PAS domain pfam13439 1 Glyco_transf_4 Glycosyltransferase Family 4 pfam13442 1 Cytochrome_CBB3 Cytochrome C oxidase pfam13445 14 zf-RING_UBOX RING-type zinc-finger pfam13450 4 NAD_binding_8 NAD(P)-binding Rossmann-like domain pfam13456 34 RVT_3 Reverse transcriptase-like pfam13460 13 NAD_binding_10 NAD(P)H-binding pfam13474 2 SnoaL_3 SnoaL-like domain pfam13476 2 AAA_23 AAA domain pfam13481 1 AAA_25 AAA domain pfam13483 1 Lactamase_B_3 Beta-lactamase superfamily domain pfam13499 71 EF-hand_7 EF-hand domain pair pfam13506 1 Glyco_transf_21 Glycosyl transferase family 21 pfam13507 2 GATase_5 CobB/CobQ-like glutamine amidotransferase pfam13508 1 Acetyltransf_7 Acetyltransferase (GNAT) domain pfam13513 1 HEAT_EZ HEAT-like repeat pfam13515 3 FUSC_2 Fusaric acid resistance protein-like pfam13519 4 VWA_2 von Willebrand factor type A domain pfam13520 19 AA_permease_2 Amino acid permease pfam13532 8 2OG-FeII_Oxy_2 2OG-Fe(II) oxygenase superfamily pfam13537 2 GATase_7 Glutamine amidotransferase domain pfam13541 1 ChlI Subunit ChlI of Mg-chelatase pfam13549 1 ATP-grasp_5 ATP-grasp domain pfam13561 42 adh_short_C2 Enoyl-(Acyl carrier protein) reductase pfam13563 3 2_5_RNA_ligase2 2'-5' RNA ligase superfamily pfam13578 1 Methyltransf_24 Methyltransferase domain pfam13589 7 HATPase_c_3 Histidine kinase- pfam13593 1 SBF_like SBF-like CPA transporter family (DUF4137) pfam13599 1 Pentapeptide_4 Pentapeptide repeats (9 copies) pfam13602 6 ADH_zinc_N_2 Zinc-binding dehydrogenase pfam13603 1 tRNA-synt_1_2 Leucyl-tRNA synthetase pfam13609 1 Porin_4 Gram-negative porin pfam13620 1 CarboxypepD_reg Carboxypeptidase regulatory-like domain pfam13621 6 Cupin_8 Cupin-like domain pfam13622 2 4HBT_3 Thioesterase-like superfamily pfam13632 3 Glyco_trans_2_3 Glycosyl transferase family group 2 pfam13638 2 PIN_4 PIN domain pfam13639 223 zf-RING_2 Ring finger domain pfam13640 11 2OG-FeII_Oxy_3 2OG-Fe(II) oxygenase superfamily pfam13641 8 Glyco_tranf_2_3 Glycosyltransferase like family 2 pfam13646 4 HEAT_2 HEAT repeats pfam13649 19 Methyltransf_25 Methyltransferase domain pfam13655 1 RVT_N N-terminal domain of reverse transcriptase pfam13656 3 RNA_pol_L_2 RNA polymerase Rpb3/Rpb11 dimerisation pfam13662 2 Toprim_4 Toprim domain pfam13664 3 DUF4149 Domain of unknown function (DUF4149) pfam13668 5 Ferritin_2 Ferritin-like domain pfam13671 2 AAA_33 AAA domain pfam13672 1 PP2C_2 Protein phosphatase 2C pfam13676 1 TIR_2 TIR domain pfam13679 1 Methyltransf_32 Methyltransferase domain pfam13691 3 Lactamase_B_4 tRNase Z endonuclease pfam13692 7 Glyco_trans_1_4 Glycosyl transferases group 1 pfam13714 1 PEP_mutase Phosphoenolpyruvate phosphomutase pfam13716 4 CRAL_TRIO_2 Divergent CRAL/TRIO domain pfam13718 1 GNAT_acetyltr_2 GNAT acetyltransferase 2 pfam13720 1 Acetyltransf_11 Udp N-acetylglucosamine pfam13764 1 E3_UbLigase_R4 E3 ubiquitin-protein ligase UBR4 pfam13768 3 VWA_3 von Willebrand factor type A domain pfam13771 4 zf-HC5HC2H PHD-like zinc-binding domain pfam13774 5 Longin Regulated-SNARE-like domain pfam13779 4 DUF4175 Domain of unknown function (DUF4175) pfam13793 3 Pribosyltran_N N-terminal domain of ribose phosphate pfam13806 1 Rieske_2 Rieske-like [2Fe-2S] domain pfam13812 3 PPR_3 Pentatricopeptide repeat domain pfam13813 10 MBOAT_2 Membrane bound O-acyl transferase family pfam13821 1 DUF4187 Domain of unknown function (DUF4187) pfam13832 6 zf-HC5HC2H_2 PHD-zinc-finger like domain pfam13833 13 EF-hand_8 EF-hand domain pair pfam13837 26 Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain pfam13838 3 Clathrin_H_link Clathrin-H-link pfam13839 75 PC-Esterase GDSL/SGNH-like Acyl-Esterase family found pfam13844 3 Glyco_transf_41 Glycosyl transferase family 41 pfam13847 1 Methyltransf_31 Methyltransferase domain pfam13848 1 Thioredoxin_6 Thioredoxin-like domain pfam13850 1 ERGIC_N Endoplasmic Reticulum-Golgi Intermediate pfam13855 55 LRR_8 Leucine rich repeat pfam13862 1 BCIP p21-C-terminal region-binding protein pfam13867 2 SAP30_Sin3_bdg Sin3 binding region of histone pfam13868 6 TPH Trichohyalin-plectin-homology domain pfam13869 4 NUDIX_2 Nucleotide hydrolase pfam13872 1 AAA_34 P-loop containing NTP hydrolase pore-1 pfam13874 1 Nup54 Nucleoporin complex subunit 54 pfam13877 1 RPAP3_C Potential Monad-binding region of RPAP3 pfam13878 1 zf-C2H2_3 zinc-finger of acetyl-transferase ESCO pfam13880 1 Acetyltransf_13 ESCO1/2 acetyl-transferase pfam13881 5 Rad60-SLD_2 Ubiquitin-2 like Rad60 SUMO-like pfam13883 2 Pyrid_oxidase_2 Pyridoxamine 5'-phosphate oxidase pfam13889 1 Chromosome_seg Chromosome segregation during meiosis pfam13890 2 Rab3-GTPase_cat Rab3 GTPase-activating protein pfam13893 2 RRM_5 RNA recognition motif pfam13898 1 DUF4205 Domain of unknown function (DUF4205) pfam13899 2 Thioredoxin_7 Thioredoxin-like pfam13901 1 zf-RING_9 Putative zinc-RING and/or ribbon pfam13902 1 R3H-assoc R3H-associated N-terminal domain pfam13905 3 Thioredoxin_8 Thioredoxin-like pfam13911 4 AhpC-TSA_2 AhpC/TSA antioxidant enzyme pfam13912 19 zf-C2H2_6 C2H2-type zinc finger pfam13917 1 zf-CCHC_3 Zinc knuckle pfam13920 36 zf-C3HC4_3 Zinc finger pfam13921 14 Myb_DNA-bind_6 Myb-like DNA-binding domain pfam13923 5 zf-C3HC4_2 Zinc finger pfam13925 3 Katanin_con80 con80 domain of Katanin pfam13934 1 ELYS Nuclear pore complex assembly pfam13943 3 WPP WPP domain pfam13947 7 GUB_WAK_bind Wall-associated receptor kinase pfam13952 2 DUF4216 Domain of unknown function (DUF4216) pfam13962 31 PGG Domain of unknown function pfam13963 2 Transpos_assoc Transposase-associated domain pfam13966 16 zf-RVT zinc-binding in reverse transcriptase pfam13968 2 DUF4220 Domain of unknown function (DUF4220) pfam14008 10 Metallophos_C Iron/zinc purple acid phosphatase-like pfam14009 28 DUF4228 Domain of unknown function (DUF4228) pfam14108 3 DUF4281 Domain of unknown function (DUF4281) pfam14111 22 DUF4283 Domain of unknown function (DUF4283) pfam14138 1 COX16 Cytochrome c oxidase assembly protein COX16 pfam14144 27 DOG1 Seed dormancy control pfam14159 6 CAAD CAAD domains of cyanobacterial aminoacyl-tRNA pfam14214 15 Helitron_like_N Helitron helicase-like domain at pfam14215 21 bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors pfam14223 18 Retrotran_gag_2 gag-polypeptide of LTR copia-type pfam14226 41 DIOX_N non-haem dioxygenase in morphine synthesis pfam14228 2 MOR2-PAG1_mid Cell morphogenesis central region pfam14234 1 DUF4336 Domain of unknown function (DUF4336) pfam14237 4 DUF4339 Domain of unknown function (DUF4339) pfam14244 1 Retrotran_gag_3 gag-polypeptide of LTR copia-type pfam14249 1 Tocopherol_cycl Tocopherol cyclase pfam14288 3 FKS1_dom1 1 pfam14290 2 DUF4370 Domain of unknown function (DUF4370) pfam14291 4 DUF4371 Domain of unknown function (DUF4371) pfam14299 35 PP2 Phloem protein 2 pfam14308 3 DnaJ-X X-domain of DnaJ-containing pfam14309 15 DUF4378 Domain of unknown function (DUF4378) pfam14327 1 CSTF2_hinge Hinge domain of cleavage stimulation pfam14360 4 PAP2_C PAP2 superfamily C-terminal pfam14363 18 AAA_assoc Domain associated at C-terminal with AAA pfam14364 1 DUF4408 Domain of unknown function (DUF4408) pfam14365 1 DUF4409 Domain of unknown function (DUF4409) pfam14368 22 LTP_2 Probable lipid transfer pfam14369 2 zinc_ribbon_9 zinc-ribbon pfam14372 38 DUF4413 Domain of unknown function (DUF4413) pfam14374 1 Ribos_L4_asso_C 60S ribosomal protein L4 C-terminal pfam14378 2 PAP2_3 PAP2 superfamily pfam14379 17 Myb_CC_LHEQLE MYB-CC type transfactor pfam14380 4 WAK_assoc Wall-associated receptor kinase C-terminal pfam14381 9 EDR1 Ethylene-responsive protein kinase Le-CTR1 pfam14383 1 VARLMGL DUF761-associated sequence motif pfam14389 7 Lzipper-MIP1 Leucine-zipper of ternary complex factor pfam14416 5 PMR5N PMR5 N terminal Domain pfam14429 1 DOCK-C2 C2 domain in Dock180 and Zizimin proteins pfam14432 95 DYW_deaminase DYW family of nucleic acid deaminases pfam14437 1 MafB19-deam MafB19-like deaminase pfam14438 3 SM-ATX Ataxin 2 SM domain pfam14443 1 DBC1 DBC1 pfam14476 3 Chloroplast_duf Petal formation-expressed pfam14500 1 MMS19_N Dos2-interacting transcription regulator of pfam14523 5 Syntaxin_2 Syntaxin-like protein pfam14538 2 Raptor_N Raptor N-terminal CASPase like domain pfam14541 35 TAXi_C Xylanase inhibitor C-terminal pfam14542 1 Acetyltransf_CG GCN5-related N-acetyl-transferase pfam14543 58 TAXi_N Xylanase inhibitor N-terminal pfam14547 30 Hydrophob_seed Hydrophobic seed protein pfam14551 1 MCM_N MCM N-terminal domain pfam14559 1 TPR_19 Tetratricopeptide repeat pfam14560 1 Ubiquitin_2 Ubiquitin-like domain pfam14566 1 PTPlike_phytase Inositol hexakisphosphate pfam14570 5 zf-RING_4 RING/Ubox like zinc-binding domain pfam14571 5 Di19_C Stress-induced protein Di19 pfam14576 6 SEO_N Sieve element occlusion N-terminus pfam14580 4 LRR_9 Leucine-rich repeat pfam14599 6 zinc_ribbon_6 Zinc-ribbon pfam14604 4 SH3_9 Variant SH3 domain pfam14617 1 CMS1 U3-containing 90S pre-ribosomal complex subunit pfam14622 3 Ribonucleas_3_3 Ribonuclease-III-like pfam14624 3 Vwaint VWA / Hh protein intein-like pfam14629 1 ORC4_C Origin recognition complex (ORC) subunit 4 pfam14630 1 ORC5_C Origin recognition complex (ORC) subunit 5 pfam14631 1 FancD2 Fanconi anaemia protein FancD2 nuclease pfam14633 1 SH2_2 SH2 domain pfam14634 1 zf-RING_5 zinc-RING finger domain pfam14647 2 FAM91_N FAM91 N-terminus pfam14649 1 Spatacsin_C Spatacsin C-terminus pfam14655 1 RAB3GAP2_N Rab3 GTPase-activating protein regulatory pfam14661 2 HAUS6_N HAUS augmin-like complex subunit 6 N-terminus pfam14678 1 FANCI_S4 FANCI solenoid 4 pfam14681 6 UPRTase Uracil phosphoribosyltransferase pfam14683 3 CBM-like Polysaccharide lyase family 4 pfam14693 2 Ribosomal_TL5_C Ribosomal protein TL5 pfam14695 1 LINES_C Lines C-terminus pfam14700 2 RPOL_N DNA-directed RNA polymerase N-terminal pfam14705 1 Costars Costars pfam14712 1 Snapin_Pallidin Snapin/Pallidin pfam14714 1 KH_dom-like KH-domain-like of EngA bacterial GTPase pfam14724 1 mit_SMPDase Mitochondrial-associated sphingomyelin pfam14735 1 HAUS4 HAUS augmin-like complex subunit 4 pfam14736 1 N_Asn_amidohyd Protein N-terminal asparagine pfam14748 1 P5CR_dimer Pyrroline-5-carboxylate reductase pfam14764 1 SPG48 AP-5 complex subunit pfam14768 1 RPA_interact_C Replication protein A interacting pfam14770 1 TMEM18 Transmembrane protein 18 pfam14778 1 ODR4-like Olfactory receptor 4-like pfam14780 1 DUF4477 Domain of unknown function (DUF4477) pfam14792 1 DNA_pol_B_palm DNA polymerase beta palm pfam14802 1 TMEM192 TMEM192 family pfam14817 1 HAUS5 HAUS augmin-like complex subunit 5 pfam14826 1 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal pfam14829 1 GPAT_N Glycerol-3-phosphate acyltransferase N-terminal pfam14853 3 Fis1_TPR_C Fis1 C-terminal tetratricopeptide repeat pfam14868 1 DUF4487 Domain of unknown function (DUF4487) pfam14870 1 PSII_BNR Photosynthesis system II assembly factor pfam14901 2 Jiv90 Cleavage inducing molecular chaperone pfam14929 1 TAF1_subA TAF RNA Polymerase I subunit A pfam14932 2 HAUS-augmin3 HAUS augmin-like complex subunit 3 pfam14938 5 SNAP Soluble NSF attachment protein pfam14953 1 DUF4504 Domain of unknown function (DUF4504) pfam14966 1 DNA_repr_REX1B DNA repair REX1-B pfam14968 2 CCDC84 Coiled coil protein 84 pfam14990 1 DUF4516 Domain of unknown function (DUF4516) pfam15003 1 HAUS2 HAUS augmin-like complex subunit 2 pfam15011 2 CK2S Casein Kinase 2 substrate pfam15054 3 DUF4535 Domain of unknown function (DUF4535) pfam15071 1 TMEM220 Transmembrane family 220 pfam15072 1 DUF4539 Domain of unknown function (DUF4539) pfam15159 1 PIG-Y Phosphatidylinositol pfam15243 1 ANAPC15 Anaphase-promoting complex subunit 15 pfam15249 1 GLTSCR1 Conserved region of unknown function on GLTSCR pfam15264 1 TSSC4 tumor suppressing sub-chromosomal transferable pfam15279 1 SOBP Sine oculis-binding protein pfam15306 1 LIN37 LIN37 pfam15346 1 ARGLU Arginine and glutamate-rich 1 pfam15365 4 PNRC Proline-rich nuclear receptor coactivator pfam15370 2 DUF4598 Domain of unknown function (DUF4598) pfam15449 4 Retinal Retinal protein pfam15469 1 Sec5 Exocyst complex component Sec5 pfam15490 1 Ten1_2 Telomere-capping pfam15491 2 CTC1_2 CST pfam15613 3 WSD Williams-Beuren syndrome DDT (WSD) pfam15628 6 RRM_DME RRM in Demeter pfam15630 1 CENP-S CENP-S protein pfam15663 3 zf-CCCH_3 Zinc-finger containing family pfam15685 1 GGN Gametogenetin pfam15697 2 DUF4666 Domain of unknown function (DUF4666) pfam15699 1 NPR1_interact NPR1 interacting pfam15704 1 Mt_ATP_synt Mitochondrial ATP synthase subunit pfam15709 1 DUF4670 Domain of unknown function (DUF4670) pfam15749 1 UPF0544 Uncharacterized protein family UPF0544 pfam15787 2 DUF4704 Domain of unknown function (DUF4704) pfam15805 1 SCNM1_acidic Acidic C-terminal region of sodium channel pfam15862 2 Coilin_N Coilin N-terminus pfam15906 1 zf-NOSIP Zinc-finger of nitric oxide pfam15916 1 DUF4743 Domain of unknown function (DUF4743) pfam15921 1 CCDC158 Coiled-coil domain-containing protein 158 pfam15924 1 ALG11_N ALG11 mannosyltransferase N-terminus pfam15938 1 DUF4750 Domain of unknown function (DUF4750) pfam15963 1 Myb_DNA-bind_7 Myb DNA-binding like pfam15967 1 Nucleoporin_FG2 Nucleoporin FG repeated region pfam15982 1 TMEM135_C_rich N-terminal cysteine-rich region of pfam15985 2 KH_6 KH domain pfam16016 5 DUF4782 Domain of unknown function (DUF4782) pfam16021 1 PDCD7 Programmed cell death protein 7 pfam16029 1 DUF4787 Domain of unknown function (DUF4787) pfam16035 2 Chalcone_2 Chalcone isomerase like pfam16036 1 Chalcone_3 Chalcone isomerase-like pfam16041 1 DUF4793 Domain of unknown function (DUF4793) pfam16045 2 LisH_2 LisH pfam16053 1 MRP-S34 Mitochondrial 28S ribosomal protein S34 pfam16076 3 Acyltransf_C Acyltransferase C-terminus pfam16093 1 PAC4 Proteasome assembly chaperone 4 pfam16095 1 COR C-terminal of Roc pfam16099 2 RMI1_C Recq-mediated genome instability protein 1 pfam16100 1 RMI2 RecQ-mediated genome instability protein 2 pfam16101 1 PRIMA1 Proline-rich membrane anchor 1 pfam16113 19 ECH_2 Enoyl-CoA hydratase/isomerase pfam16114 3 Citrate_bind ATP citrate lyase citrate-binding pfam16123 2 HAGH_C Hydroxyacylglutathione hydrolase C-terminus pfam16124 1 RecQ_Zn_bind RecQ zinc-binding pfam16135 24 Jas TPL-binding domain in jasmonate signalling pfam16136 3 NINJA_B Putative nuclear localization signal pfam16158 2 N_BRCA1_IG Ig-like domain from next to BRCA1 gene pfam16166 4 TIC20 Chloroplast import apparatus Tic20-like pfam16187 4 Peptidase_M16_M Middle or third domain of pfam16188 1 Peptidase_M24_C C-terminal region of peptidase_M24 pfam16189 3 Creatinase_N_2 Creatinase/Prolidase N-terminal domain pfam16200 2 Band_7_C C-terminal region of band_7 pfam16203 1 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase pfam16205 4 Ribosomal_S17_N Ribosomal_S17 N-terminal pfam16206 1 Mon2_C C-terminal region of Mon2 protein pfam16207 1 RAWUL RAWUL domain RING finger- and WD40-associated pfam16208 2 Keratin_2_head Keratin type II head pfam16209 3 PhoLip_ATPase_N Phospholipid-translocating ATPase pfam16211 12 Histone_H2A_C C-terminus of histone H2A pfam16212 12 PhoLip_ATPase_C Phospholipid-translocating P-type ATPase pfam16213 1 DCB Dimerisation and cyclophilin-binding domain of pfam16269 2 DUF4922 Domain of unknown function (DUF4922) pfam16275 1 SF1-HH Splicing factor 1 helix-hairpin domain pfam16282 1 SANT_DAMP1_like SANT/Myb-like domain of DAMP1 pfam16294 1 RSB_motif RNSP1-SAP18 binding (RSB) motif pfam16312 3 Oberon_cc Coiled-coil region of Oberon pfam16321 1 Ribosom_S30AE_C Sigma 54 modulation/S30EA ribosomal pfam16327 1 CcmF_C Cytochrome c-type biogenesis protein CcmF pfam16360 1 GTP-bdg_M GTP-binding GTPase Middle Region pfam16363 25 GDP_Man_Dehyd GDP-mannose 4 pfam16399 1 Aquarius_N Intron-binding protein aquarius N-terminus pfam16413 1 Mlh1_C DNA mismatch repair protein Mlh1 C-terminus pfam16414 1 NPC1_N Niemann-Pick C1 N terminus pfam16420 1 ATG7_N Ubiquitin-like modifier-activating enzyme ATG7 pfam16421 4 E2F_CC-MB E2F transcription factor CC-MB domain pfam16455 3 UBD Ubiquitin-binding domain pfam16491 1 Peptidase_M48_N CAAX prenyl protease N-terminal pfam16495 1 SWIRM-assoc_1 SWIRM-associated region 1 pfam16499 4 Melibiase_2 Alpha galactosidase A pfam16501 1 SCAPER_N S phase cyclin A-associated protein in the pfam16507 1 BLM10_mid Proteasome-substrate-size regulator pfam16529 4 Ge1_WD40 WD40 region of Ge1 pfam16543 1 DFRP_C DRG Family Regulatory Proteins pfam16544 4 STAR_dimer Homodimerisation region of STAR domain pfam16546 1 SGTA_dimer Homodimerisation domain of SGTA pfam16561 17 AMPK1_CBM Glycogen recognition site of AMP-activated pfam16575 2 CLP1_P mRNA cleavage and polyadenylation factor CLP1 pfam16589 1 BRCT_2 BRCT domain pfam16594 1 ATP-synt_Z Putative AtpZ or ATP-synthase-associated pfam16596 2 MFMR_assoc Disordered region downstream of MFMR pfam16639 2 Apocytochr_F_N Apocytochrome F pfam16653 2 Sacchrp_dh_C Saccharopine dehydrogenase C-terminal pfam16656 10 Pur_ac_phosph_N Purple acid Phosphatase pfam16661 1 Lactamase_B_6 Metallo-beta-lactamase superfamily pfam16669 5 TTC5_OB Tetratricopeptide repeat protein 5 OB fold pfam16679 2 CDT1_C DNA replication factor Cdt1 C-terminal domain pfam16697 1 Yop-YscD_cpl Inner membrane component of T3SS pfam16709 2 SCAB-IgPH Fused Ig-PH domain of plant-specific pfam16712 1 SCAB_CC Coiled-coil regions of plant-specific pfam16719 6 SAWADEE SAWADEE domain pfam16740 1 SKA2 Spindle and kinetochore-associated protein 2 pfam16746 2 BAR_3 BAR domain of APPL family pfam16770 1 RTT107_BRCT_5 Regulator of Ty1 transposition protein pfam16835 1 SF3A2 Pre-mRNA-splicing factor SF3a complex subunit 2 pfam16845 10 SQAPI Aspartic acid proteinase inhibitor pfam16851 1 Stomagen Stomagen pfam16858 1 CNDH2_C Condensin II complex subunit CAP-H2 or CNDH2 pfam16860 1 CX9C CHCH-CHCH-like Cx9C pfam16870 2 OxoGdeHyase_C 2-oxoglutarate dehydrogenase C-terminal pfam16879 3 Sin3a_C C-terminal domain of Sin3a protein pfam16884 9 ADH_N_2 N-terminal domain of oxidoreductase pfam16891 7 STPPase_N Serine-threonine protein phosphatase pfam16897 3 MMR_HSR1_Xtn C-terminal region of MMR_HSR1 domain pfam16899 2 Cyclin_C_2 Cyclin C-terminal domain pfam16906 3 Ribosomal_L26 Ribosomal proteins L26 eukaryotic pfam16908 4 VPS13 Vacuolar sorting-associated protein 13 pfam16909 1 VPS13_C Vacuolar-sorting-associated 13 protein pfam16910 1 VPS13_mid_rpt Repeating coiled region of VPS13 pfam16913 29 PUNUT Purine nucleobase transmembrane transport pfam16916 1 ZT_dimer Dimerisation domain of Zinc Transporter pfam16922 1 SLD5_C DNA replication complex GINS protein SLD5 pfam16923 1 Glyco_hydro_63N Glycosyl hydrolase family 63 N-terminal pfam16940 1 Tic110 Chloroplast envelope transporter pfam16953 2 PRORP Protein-only RNase P pfam16969 4 SRP68 RNA-binding signal recognition particle 68 pfam16974 2 NAR2 High-affinity nitrate transporter accessory pfam16983 2 MFS_MOT1 Molybdate transporter of MFS superfamily pfam16987 4 KIX_2 KIX domain pfam16989 1 T6SS_VasJ Type VI secretion pfam16994 2 Glyco_trans_4_5 Glycosyl-transferase family 4 pfam17032 1 zinc_ribbon_15 zinc-ribbon family pfam17035 7 BET Bromodomain extra-terminal - transcription pfam17047 2 SMP_LBD Synaptotagmin-like mitochondrial-lipid-binding pfam17067 2 RPS31 Ribosomal protein S31e pfam17098 1 Wtap WTAP/Mum2p family pfam17135 3 Ribosomal_L18 Ribosomal protein 60S L18 and 50S L18e pfam17136 2 ribosomal_L24 Ribosomal proteins 50S L24/mitochondrial pfam17144 3 Ribosomal_L5e Ribosomal large subunit proteins 60S L5 pfam17171 1 GST_C_6 Glutathione S-transferase pfam17177 12 PPR_long Pentacotripeptide-repeat region of PROPR pfam17181 14 EPF Epidermal patterning factor proteins pfam17184 1 Rit1_C Rit1 N-terminal domain